BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= GAGACAGAGAAGATTACAGTACTCGAGTACTGTAATCTTCTCTGTCTCTTTTT (evalue = 10)
Length=53
Score E
Sequences producing significant alignments: (Bits) Value
gi|1034608395|ref|XM_017026935.1| PREDICTED: Homo sapiens prote... 48.1 7e-05
gi|324021714|ref|NM_006247.3| Homo sapiens protein phosphatase ... 48.1 7e-05
gi|324021715|ref|NM_001204284.1| Homo sapiens protein phosphata... 40.1 0.017
gi|1034586045|ref|XM_011536381.2| PREDICTED: Homo sapiens SPT16... 36.2 0.27
gi|1034696136|ref|XR_001758382.1| PREDICTED: Homo sapiens uncha... 34.2 1.1
gi|1034658064|ref|XR_001745077.1| PREDICTED: Homo sapiens uncha... 34.2 1.1
gi|1034597752|ref|XM_005256424.2| PREDICTED: Homo sapiens kines... 32.2 4.2
gi|291327508|ref|NM_006612.5| Homo sapiens kinesin family membe... 32.2 4.2
gi|613410204|ref|NM_001009899.3| Homo sapiens upstream transcri... 32.2 4.2
gi|1034631755|ref|XM_005247208.4| PREDICTED: Homo sapiens upstr... 32.2 4.2
gi|1034631753|ref|XM_017005871.1| PREDICTED: Homo sapiens upstr... 32.2 4.2
gi|1034631756|ref|XM_017005872.1| PREDICTED: Homo sapiens upstr... 32.2 4.2
gi|52856423|ref|NM_001005338.1| Homo sapiens olfactory receptor... 32.2 4.2
gi|1034636333|ref|XM_017007444.1| PREDICTED: Homo sapiens BOC c... 32.2 4.2
gi|1034636343|ref|XM_017007449.1| PREDICTED: Homo sapiens BOC c... 32.2 4.2
gi|1034636355|ref|XM_017007453.1| PREDICTED: Homo sapiens BOC c... 32.2 4.2
gi|1034636353|ref|XM_017007452.1| PREDICTED: Homo sapiens BOC c... 32.2 4.2
gi|1034636339|ref|XM_017007447.1| PREDICTED: Homo sapiens BOC c... 32.2 4.2
gi|1034636335|ref|XM_017007445.1| PREDICTED: Homo sapiens BOC c... 32.2 4.2
gi|688955528|ref|NM_001301861.1| Homo sapiens BOC cell adhesion... 32.2 4.2
gi|1034636331|ref|XM_017007443.1| PREDICTED: Homo sapiens BOC c... 32.2 4.2
gi|1034636358|ref|XM_017007454.1| PREDICTED: Homo sapiens BOC c... 32.2 4.2
gi|1034636348|ref|XM_005247892.2| PREDICTED: Homo sapiens BOC c... 32.2 4.2
gi|1034636329|ref|XM_017007442.1| PREDICTED: Homo sapiens BOC c... 32.2 4.2
gi|1034636352|ref|XM_005247897.2| PREDICTED: Homo sapiens BOC c... 32.2 4.2
gi|1034636349|ref|XM_011513305.2| PREDICTED: Homo sapiens BOC c... 32.2 4.2
gi|1034636347|ref|XM_005247891.2| PREDICTED: Homo sapiens BOC c... 32.2 4.2
gi|1034636345|ref|XM_017007450.1| PREDICTED: Homo sapiens BOC c... 32.2 4.2
gi|1034636357|ref|XR_001740359.1| PREDICTED: Homo sapiens BOC c... 32.2 4.2
gi|1034636327|ref|XM_017007441.1| PREDICTED: Homo sapiens BOC c... 32.2 4.2
gi|1034636350|ref|XM_017007451.1| PREDICTED: Homo sapiens BOC c... 32.2 4.2
gi|688955549|ref|NM_033254.3| Homo sapiens BOC cell adhesion as... 32.2 4.2
gi|1034636341|ref|XM_017007448.1| PREDICTED: Homo sapiens BOC c... 32.2 4.2
gi|1034636337|ref|XM_017007446.1| PREDICTED: Homo sapiens BOC c... 32.2 4.2
> gi|1034608395|ref|XM_017026935.1| PREDICTED: Homo sapiens protein
phosphatase 5 catalytic subunit (PPP5C), transcript variant
X1, mRNA
Length=2255
Score = 48.1 bits (24), Expect = 7e-05
Identities = 24/24 (100%), Gaps = 0/24 (0%)
Strand=Plus/Minus
Query 28 TACTGTAATCTTCTCTGTCTCTTT 51
||||||||||||||||||||||||
Sbjct 815 TACTGTAATCTTCTCTGTCTCTTT 792
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GAGACAGAGAAGATTACAGTA 21
|||||||||||||||||||||
Sbjct 795 GAGACAGAGAAGATTACAGTA 815
> gi|324021714|ref|NM_006247.3| Homo sapiens protein phosphatase
5 catalytic subunit (PPP5C), transcript variant 1, mRNA
Length=2232
Score = 48.1 bits (24), Expect = 7e-05
Identities = 24/24 (100%), Gaps = 0/24 (0%)
Strand=Plus/Minus
Query 28 TACTGTAATCTTCTCTGTCTCTTT 51
||||||||||||||||||||||||
Sbjct 820 TACTGTAATCTTCTCTGTCTCTTT 797
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GAGACAGAGAAGATTACAGTA 21
|||||||||||||||||||||
Sbjct 800 GAGACAGAGAAGATTACAGTA 820
> gi|324021715|ref|NM_001204284.1| Homo sapiens protein phosphatase
5 catalytic subunit (PPP5C), transcript variant 2, mRNA
Length=2166
Score = 40.1 bits (20), Expect = 0.017
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 2 AGACAGAGAAGATTACAGTA 21
||||||||||||||||||||
Sbjct 735 AGACAGAGAAGATTACAGTA 754
Score = 40.1 bits (20), Expect = 0.017
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 28 TACTGTAATCTTCTCTGTCT 47
||||||||||||||||||||
Sbjct 754 TACTGTAATCTTCTCTGTCT 735
> gi|1034586045|ref|XM_011536381.2| PREDICTED: Homo sapiens SPT16
homolog, facilitates chromatin remodeling subunit (SUPT16H),
transcript variant X1, mRNA
Length=4686
Score = 36.2 bits (18), Expect = 0.27
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 36 TCTTCTCTGTCTCTTTTT 53
||||||||||||||||||
Sbjct 386 TCTTCTCTGTCTCTTTTT 369
> gi|1034696136|ref|XR_001758382.1| PREDICTED: Homo sapiens uncharacterized
LOC107986764 (LOC107986764), ncRNA
Length=2660
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 13 ATTACAGTACTCGAGTA 29
|||||||||||||||||
Sbjct 2408 ATTACAGTACTCGAGTA 2424
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 20 TACTCGAGTACTGTAAT 36
|||||||||||||||||
Sbjct 2424 TACTCGAGTACTGTAAT 2408
> gi|1034658064|ref|XR_001745077.1| PREDICTED: Homo sapiens uncharacterized
LOC107986764 (LOC107986764), ncRNA
Length=2660
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 13 ATTACAGTACTCGAGTA 29
|||||||||||||||||
Sbjct 2408 ATTACAGTACTCGAGTA 2424
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 20 TACTCGAGTACTGTAAT 36
|||||||||||||||||
Sbjct 2424 TACTCGAGTACTGTAAT 2408
> gi|1034597752|ref|XM_005256424.2| PREDICTED: Homo sapiens kinesin
family member 1C (KIF1C), transcript variant X1, mRNA
Length=5165
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 1 GAGACAGAGAAGATTA 16
||||||||||||||||
Sbjct 1684 GAGACAGAGAAGATTA 1699
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 33 TAATCTTCTCTGTCTC 48
||||||||||||||||
Sbjct 1699 TAATCTTCTCTGTCTC 1684
> gi|291327508|ref|NM_006612.5| Homo sapiens kinesin family member
1C (KIF1C), mRNA
Length=7935
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 1 GAGACAGAGAAGATTA 16
||||||||||||||||
Sbjct 1693 GAGACAGAGAAGATTA 1708
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 33 TAATCTTCTCTGTCTC 48
||||||||||||||||
Sbjct 1708 TAATCTTCTCTGTCTC 1693
> gi|613410204|ref|NM_001009899.3| Homo sapiens upstream transcription
factor family member 3 (USF3), transcript variant 1,
mRNA
Length=13708
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 38 TTCTCTGTCTCTTTTT 53
||||||||||||||||
Sbjct 10892 TTCTCTGTCTCTTTTT 10907
> gi|1034631755|ref|XM_005247208.4| PREDICTED: Homo sapiens upstream
transcription factor family member 3 (USF3), transcript
variant X2, mRNA
Length=13636
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 38 TTCTCTGTCTCTTTTT 53
||||||||||||||||
Sbjct 10820 TTCTCTGTCTCTTTTT 10835
> gi|1034631753|ref|XM_017005871.1| PREDICTED: Homo sapiens upstream
transcription factor family member 3 (USF3), transcript
variant X1, mRNA
Length=13603
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 38 TTCTCTGTCTCTTTTT 53
||||||||||||||||
Sbjct 10787 TTCTCTGTCTCTTTTT 10802
> gi|1034631756|ref|XM_017005872.1| PREDICTED: Homo sapiens upstream
transcription factor family member 3 (USF3), transcript
variant X3, mRNA
Length=13520
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 38 TTCTCTGTCTCTTTTT 53
||||||||||||||||
Sbjct 10704 TTCTCTGTCTCTTTTT 10719
> gi|52856423|ref|NM_001005338.1| Homo sapiens olfactory receptor
family 5 subfamily H member 1 (OR5H1), mRNA
Length=942
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 36 TCTTCTCTGTCTCTTT 51
||||||||||||||||
Sbjct 734 TCTTCTCTGTCTCTTT 749
> gi|1034636333|ref|XM_017007444.1| PREDICTED: Homo sapiens BOC
cell adhesion associated, oncogene regulated (BOC), transcript
variant X4, mRNA
Length=4246
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 38 TTCTCTGTCTCTTTTT 53
||||||||||||||||
Sbjct 3721 TTCTCTGTCTCTTTTT 3706
> gi|1034636343|ref|XM_017007449.1| PREDICTED: Homo sapiens BOC
cell adhesion associated, oncogene regulated (BOC), transcript
variant X9, mRNA
Length=4405
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 38 TTCTCTGTCTCTTTTT 53
||||||||||||||||
Sbjct 3880 TTCTCTGTCTCTTTTT 3865
> gi|1034636355|ref|XM_017007453.1| PREDICTED: Homo sapiens BOC
cell adhesion associated, oncogene regulated (BOC), transcript
variant X17, mRNA
Length=3820
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 38 TTCTCTGTCTCTTTTT 53
||||||||||||||||
Sbjct 3295 TTCTCTGTCTCTTTTT 3280
> gi|1034636353|ref|XM_017007452.1| PREDICTED: Homo sapiens BOC
cell adhesion associated, oncogene regulated (BOC), transcript
variant X16, mRNA
Length=3829
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 38 TTCTCTGTCTCTTTTT 53
||||||||||||||||
Sbjct 3304 TTCTCTGTCTCTTTTT 3289
> gi|1034636339|ref|XM_017007447.1| PREDICTED: Homo sapiens BOC
cell adhesion associated, oncogene regulated (BOC), transcript
variant X7, mRNA
Length=4277
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 38 TTCTCTGTCTCTTTTT 53
||||||||||||||||
Sbjct 3752 TTCTCTGTCTCTTTTT 3737
> gi|1034636335|ref|XM_017007445.1| PREDICTED: Homo sapiens BOC
cell adhesion associated, oncogene regulated (BOC), transcript
variant X5, mRNA
Length=4319
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 38 TTCTCTGTCTCTTTTT 53
||||||||||||||||
Sbjct 3794 TTCTCTGTCTCTTTTT 3779
> gi|688955528|ref|NM_001301861.1| Homo sapiens BOC cell adhesion
associated, oncogene regulated (BOC), transcript variant
1, mRNA
Length=4339
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 38 TTCTCTGTCTCTTTTT 53
||||||||||||||||
Sbjct 3794 TTCTCTGTCTCTTTTT 3779
> gi|1034636331|ref|XM_017007443.1| PREDICTED: Homo sapiens BOC
cell adhesion associated, oncogene regulated (BOC), transcript
variant X3, mRNA
Length=4454
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 38 TTCTCTGTCTCTTTTT 53
||||||||||||||||
Sbjct 3929 TTCTCTGTCTCTTTTT 3914
> gi|1034636358|ref|XM_017007454.1| PREDICTED: Homo sapiens BOC
cell adhesion associated, oncogene regulated (BOC), transcript
variant X19, mRNA
Length=4205
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 38 TTCTCTGTCTCTTTTT 53
||||||||||||||||
Sbjct 3680 TTCTCTGTCTCTTTTT 3665
> gi|1034636348|ref|XM_005247892.2| PREDICTED: Homo sapiens BOC
cell adhesion associated, oncogene regulated (BOC), transcript
variant X12, mRNA
Length=4653
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 38 TTCTCTGTCTCTTTTT 53
||||||||||||||||
Sbjct 4128 TTCTCTGTCTCTTTTT 4113
> gi|1034636329|ref|XM_017007442.1| PREDICTED: Homo sapiens BOC
cell adhesion associated, oncogene regulated (BOC), transcript
variant X2, mRNA
Length=4662
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 38 TTCTCTGTCTCTTTTT 53
||||||||||||||||
Sbjct 4137 TTCTCTGTCTCTTTTT 4122
> gi|1034636352|ref|XM_005247897.2| PREDICTED: Homo sapiens BOC
cell adhesion associated, oncogene regulated (BOC), transcript
variant X15, mRNA
Length=4384
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 38 TTCTCTGTCTCTTTTT 53
||||||||||||||||
Sbjct 3859 TTCTCTGTCTCTTTTT 3844
> gi|1034636349|ref|XM_011513305.2| PREDICTED: Homo sapiens BOC
cell adhesion associated, oncogene regulated (BOC), transcript
variant X13, mRNA
Length=4654
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 38 TTCTCTGTCTCTTTTT 53
||||||||||||||||
Sbjct 4129 TTCTCTGTCTCTTTTT 4114
> gi|1034636347|ref|XM_005247891.2| PREDICTED: Homo sapiens BOC
cell adhesion associated, oncogene regulated (BOC), transcript
variant X11, mRNA
Length=4657
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 38 TTCTCTGTCTCTTTTT 53
||||||||||||||||
Sbjct 4132 TTCTCTGTCTCTTTTT 4117
> gi|1034636345|ref|XM_017007450.1| PREDICTED: Homo sapiens BOC
cell adhesion associated, oncogene regulated (BOC), transcript
variant X10, mRNA
Length=4663
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 38 TTCTCTGTCTCTTTTT 53
||||||||||||||||
Sbjct 4138 TTCTCTGTCTCTTTTT 4123
> gi|1034636357|ref|XR_001740359.1| PREDICTED: Homo sapiens BOC
cell adhesion associated, oncogene regulated (BOC), transcript
variant X18, misc_RNA
Length=4599
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 38 TTCTCTGTCTCTTTTT 53
||||||||||||||||
Sbjct 4074 TTCTCTGTCTCTTTTT 4059
> gi|1034636327|ref|XM_017007441.1| PREDICTED: Homo sapiens BOC
cell adhesion associated, oncogene regulated (BOC), transcript
variant X1, mRNA
Length=4666
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 38 TTCTCTGTCTCTTTTT 53
||||||||||||||||
Sbjct 4141 TTCTCTGTCTCTTTTT 4126
> gi|1034636350|ref|XM_017007451.1| PREDICTED: Homo sapiens BOC
cell adhesion associated, oncogene regulated (BOC), transcript
variant X14, mRNA
Length=4796
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 38 TTCTCTGTCTCTTTTT 53
||||||||||||||||
Sbjct 4271 TTCTCTGTCTCTTTTT 4256
> gi|688955549|ref|NM_033254.3| Homo sapiens BOC cell adhesion
associated, oncogene regulated (BOC), transcript variant 2,
mRNA
Length=4687
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 38 TTCTCTGTCTCTTTTT 53
||||||||||||||||
Sbjct 4142 TTCTCTGTCTCTTTTT 4127
> gi|1034636341|ref|XM_017007448.1| PREDICTED: Homo sapiens BOC
cell adhesion associated, oncogene regulated (BOC), transcript
variant X8, mRNA
Length=4198
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 38 TTCTCTGTCTCTTTTT 53
||||||||||||||||
Sbjct 3673 TTCTCTGTCTCTTTTT 3658
> gi|1034636337|ref|XM_017007446.1| PREDICTED: Homo sapiens BOC
cell adhesion associated, oncogene regulated (BOC), transcript
variant X6, mRNA
Length=4286
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 38 TTCTCTGTCTCTTTTT 53
||||||||||||||||
Sbjct 3761 TTCTCTGTCTCTTTTT 3746
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 21028271724
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2