BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= GACTAAGGCAGAAGATGTAGAGC (evalue = 10)
Length=23
Score E
Sequences producing significant alignments: (Bits) Value
gi|334085241|ref|NM_001220778.1| Homo sapiens cyclin-dependent ... 46.1 5e-05
gi|310832422|ref|NM_000389.4| Homo sapiens cyclin-dependent kin... 46.1 5e-05
gi|614458210|ref|NM_001291549.1| Homo sapiens cyclin-dependent ... 46.1 5e-05
gi|310832423|ref|NM_078467.2| Homo sapiens cyclin-dependent kin... 46.1 5e-05
gi|334085239|ref|NM_001220777.1| Homo sapiens cyclin-dependent ... 46.1 5e-05
gi|530403466|ref|XM_005267510.1| PREDICTED: Homo sapiens LDL re... 32.2 0.82
gi|1034683431|ref|XR_915018.2| PREDICTED: Homo sapiens uncharac... 32.2 0.82
gi|1034585588|ref|XR_941992.2| PREDICTED: Homo sapiens uncharac... 32.2 0.82
gi|66346710|ref|NM_000529.2| Homo sapiens melanocortin 2 recept... 30.2 3.3
gi|632794823|ref|NM_001291911.1| Homo sapiens melanocortin 2 re... 30.2 3.3
gi|1034604095|ref|XM_017025781.1| PREDICTED: Homo sapiens melan... 30.2 3.3
gi|381342489|ref|NR_002728.3| Homo sapiens KCNQ1 opposite stran... 30.2 3.3
gi|170784816|ref|NM_024915.3| Homo sapiens grainyhead like tran... 30.2 3.3
gi|300069012|ref|NM_001190848.1| Homo sapiens CCR4-NOT transcri... 30.2 3.3
gi|300069009|ref|NM_001008225.2| Homo sapiens CCR4-NOT transcri... 30.2 3.3
gi|52486036|ref|NM_018930.3| Homo sapiens protocadherin beta 10... 30.2 3.3
gi|359338966|ref|NR_045586.1| Homo sapiens steroid receptor RNA... 30.2 3.3
gi|359298505|ref|NM_001035235.3| Homo sapiens steroid receptor ... 30.2 3.3
gi|1034690599|ref|XR_920552.2| PREDICTED: Homo sapiens uncharac... 30.2 3.3
gi|1034690598|ref|XR_001736297.1| PREDICTED: Homo sapiens uncha... 30.2 3.3
gi|1034690595|ref|XR_001736294.1| PREDICTED: Homo sapiens uncha... 30.2 3.3
gi|1034690596|ref|XR_920548.2| PREDICTED: Homo sapiens uncharac... 30.2 3.3
gi|1034690597|ref|XR_001736295.1| PREDICTED: Homo sapiens uncha... 30.2 3.3
gi|1034690594|ref|XR_001736293.1| PREDICTED: Homo sapiens uncha... 30.2 3.3
gi|1034690600|ref|XR_920553.2| PREDICTED: Homo sapiens uncharac... 30.2 3.3
gi|1034627963|ref|XR_937754.2| PREDICTED: Homo sapiens uncharac... 30.2 3.3
gi|1034627962|ref|XR_001755067.1| PREDICTED: Homo sapiens uncha... 30.2 3.3
gi|1034627959|ref|XR_001755065.1| PREDICTED: Homo sapiens uncha... 30.2 3.3
gi|1034627960|ref|XR_937750.2| PREDICTED: Homo sapiens uncharac... 30.2 3.3
gi|1034627961|ref|XR_001755066.1| PREDICTED: Homo sapiens uncha... 30.2 3.3
gi|1034627958|ref|XR_001755064.1| PREDICTED: Homo sapiens uncha... 30.2 3.3
gi|1034627964|ref|XR_937755.2| PREDICTED: Homo sapiens uncharac... 30.2 3.3
> gi|334085241|ref|NM_001220778.1| Homo sapiens cyclin-dependent
kinase inhibitor 1A (CDKN1A), transcript variant 4, mRNA
Length=2284
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 GACTAAGGCAGAAGATGTAGAGC 23
|||||||||||||||||||||||
Sbjct 804 GACTAAGGCAGAAGATGTAGAGC 782
> gi|310832422|ref|NM_000389.4| Homo sapiens cyclin-dependent kinase
inhibitor 1A (CDKN1A), transcript variant 1, mRNA
Length=2175
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 GACTAAGGCAGAAGATGTAGAGC 23
|||||||||||||||||||||||
Sbjct 694 GACTAAGGCAGAAGATGTAGAGC 672
> gi|614458210|ref|NM_001291549.1| Homo sapiens cyclin-dependent
kinase inhibitor 1A (CDKN1A), transcript variant 3, mRNA
Length=2325
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 GACTAAGGCAGAAGATGTAGAGC 23
|||||||||||||||||||||||
Sbjct 846 GACTAAGGCAGAAGATGTAGAGC 824
> gi|310832423|ref|NM_078467.2| Homo sapiens cyclin-dependent kinase
inhibitor 1A (CDKN1A), transcript variant 2, mRNA
Length=2122
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 GACTAAGGCAGAAGATGTAGAGC 23
|||||||||||||||||||||||
Sbjct 641 GACTAAGGCAGAAGATGTAGAGC 619
> gi|334085239|ref|NM_001220777.1| Homo sapiens cyclin-dependent
kinase inhibitor 1A (CDKN1A), transcript variant 5, mRNA
Length=2119
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 GACTAAGGCAGAAGATGTAGAGC 23
|||||||||||||||||||||||
Sbjct 639 GACTAAGGCAGAAGATGTAGAGC 617
> gi|530403466|ref|XM_005267510.1| PREDICTED: Homo sapiens LDL
receptor related protein 10 (LRP10), transcript variant X1,
mRNA
Length=6910
Score = 32.2 bits (16), Expect = 0.82
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 6 AGGCAGAAGATGTAGA 21
||||||||||||||||
Sbjct 4251 AGGCAGAAGATGTAGA 4266
> gi|1034683431|ref|XR_915018.2| PREDICTED: Homo sapiens uncharacterized
LOC105370222 (LOC105370222), ncRNA
Length=897
Score = 32.2 bits (16), Expect = 0.82
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 2 ACTAAGGCAGAAGATG 17
||||||||||||||||
Sbjct 703 ACTAAGGCAGAAGATG 688
> gi|1034585588|ref|XR_941992.2| PREDICTED: Homo sapiens uncharacterized
LOC105370222 (LOC105370222), ncRNA
Length=897
Score = 32.2 bits (16), Expect = 0.82
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 2 ACTAAGGCAGAAGATG 17
||||||||||||||||
Sbjct 703 ACTAAGGCAGAAGATG 688
> gi|66346710|ref|NM_000529.2| Homo sapiens melanocortin 2 receptor
(MC2R), mRNA
Length=3652
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 6 AGGCAGAAGATGTAG 20
|||||||||||||||
Sbjct 1549 AGGCAGAAGATGTAG 1563
> gi|632794823|ref|NM_001291911.1| Homo sapiens melanocortin 2
receptor (MC2R), transcript variant 2, mRNA
Length=3681
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 6 AGGCAGAAGATGTAG 20
|||||||||||||||
Sbjct 1578 AGGCAGAAGATGTAG 1592
> gi|1034604095|ref|XM_017025781.1| PREDICTED: Homo sapiens melanocortin
2 receptor (MC2R), transcript variant X1, mRNA
Length=4276
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 6 AGGCAGAAGATGTAG 20
|||||||||||||||
Sbjct 2171 AGGCAGAAGATGTAG 2185
> gi|381342489|ref|NR_002728.3| Homo sapiens KCNQ1 opposite strand/antisense
transcript 1 (non-protein coding) (KCNQ1OT1),
long non-coding RNA
Length=91671
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 6 AGGCAGAAGATGTAG 20
|||||||||||||||
Sbjct 31379 AGGCAGAAGATGTAG 31393
> gi|170784816|ref|NM_024915.3| Homo sapiens grainyhead like transcription
factor 2 (GRHL2), mRNA
Length=5231
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 3 CTAAGGCAGAAGATG 17
|||||||||||||||
Sbjct 4410 CTAAGGCAGAAGATG 4424
> gi|300069012|ref|NM_001190848.1| Homo sapiens CCR4-NOT transcription
complex subunit 4 (CNOT4), transcript variant 4, mRNA
Length=3783
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 1 GACTAAGGCAGAAGA 15
|||||||||||||||
Sbjct 2968 GACTAAGGCAGAAGA 2982
> gi|300069009|ref|NM_001008225.2| Homo sapiens CCR4-NOT transcription
complex subunit 4 (CNOT4), transcript variant 2, mRNA
Length=3774
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 1 GACTAAGGCAGAAGA 15
|||||||||||||||
Sbjct 2959 GACTAAGGCAGAAGA 2973
> gi|52486036|ref|NM_018930.3| Homo sapiens protocadherin beta
10 (PCDHB10), mRNA
Length=3284
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 7 GGCAGAAGATGTAGA 21
|||||||||||||||
Sbjct 969 GGCAGAAGATGTAGA 983
> gi|359338966|ref|NR_045586.1| Homo sapiens steroid receptor RNA
activator 1 (SRA1), transcript variant 3, non-coding RNA
Length=2015
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 4 TAAGGCAGAAGATGT 18
|||||||||||||||
Sbjct 91 TAAGGCAGAAGATGT 105
> gi|359298505|ref|NM_001035235.3| Homo sapiens steroid receptor
RNA activator 1 (SRA1), transcript variant 1, mRNA
Length=1955
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 4 TAAGGCAGAAGATGT 18
|||||||||||||||
Sbjct 91 TAAGGCAGAAGATGT 105
> gi|1034690599|ref|XR_920552.2| PREDICTED: Homo sapiens uncharacterized
LOC105372815 (LOC105372815), transcript variant X6,
ncRNA
Length=2595
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 9 CAGAAGATGTAGAGC 23
|||||||||||||||
Sbjct 437 CAGAAGATGTAGAGC 423
> gi|1034690598|ref|XR_001736297.1| PREDICTED: Homo sapiens uncharacterized
LOC105372815 (LOC105372815), transcript variant
X5, ncRNA
Length=3012
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 9 CAGAAGATGTAGAGC 23
|||||||||||||||
Sbjct 437 CAGAAGATGTAGAGC 423
> gi|1034690595|ref|XR_001736294.1| PREDICTED: Homo sapiens uncharacterized
LOC105372815 (LOC105372815), transcript variant
X2, ncRNA
Length=3578
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 9 CAGAAGATGTAGAGC 23
|||||||||||||||
Sbjct 437 CAGAAGATGTAGAGC 423
> gi|1034690596|ref|XR_920548.2| PREDICTED: Homo sapiens uncharacterized
LOC105372815 (LOC105372815), transcript variant X3,
ncRNA
Length=3595
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 9 CAGAAGATGTAGAGC 23
|||||||||||||||
Sbjct 437 CAGAAGATGTAGAGC 423
> gi|1034690597|ref|XR_001736295.1| PREDICTED: Homo sapiens uncharacterized
LOC105372815 (LOC105372815), transcript variant
X4, ncRNA
Length=3088
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 9 CAGAAGATGTAGAGC 23
|||||||||||||||
Sbjct 437 CAGAAGATGTAGAGC 423
> gi|1034690594|ref|XR_001736293.1| PREDICTED: Homo sapiens uncharacterized
LOC105372815 (LOC105372815), transcript variant
X1, ncRNA
Length=3720
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 9 CAGAAGATGTAGAGC 23
|||||||||||||||
Sbjct 437 CAGAAGATGTAGAGC 423
> gi|1034690600|ref|XR_920553.2| PREDICTED: Homo sapiens uncharacterized
LOC105372815 (LOC105372815), transcript variant X7,
ncRNA
Length=2397
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 9 CAGAAGATGTAGAGC 23
|||||||||||||||
Sbjct 437 CAGAAGATGTAGAGC 423
> gi|1034627963|ref|XR_937754.2| PREDICTED: Homo sapiens uncharacterized
LOC105372815 (LOC105372815), transcript variant X6,
ncRNA
Length=2591
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 9 CAGAAGATGTAGAGC 23
|||||||||||||||
Sbjct 433 CAGAAGATGTAGAGC 419
> gi|1034627962|ref|XR_001755067.1| PREDICTED: Homo sapiens uncharacterized
LOC105372815 (LOC105372815), transcript variant
X5, ncRNA
Length=3008
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 9 CAGAAGATGTAGAGC 23
|||||||||||||||
Sbjct 433 CAGAAGATGTAGAGC 419
> gi|1034627959|ref|XR_001755065.1| PREDICTED: Homo sapiens uncharacterized
LOC105372815 (LOC105372815), transcript variant
X2, ncRNA
Length=3574
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 9 CAGAAGATGTAGAGC 23
|||||||||||||||
Sbjct 433 CAGAAGATGTAGAGC 419
> gi|1034627960|ref|XR_937750.2| PREDICTED: Homo sapiens uncharacterized
LOC105372815 (LOC105372815), transcript variant X3,
ncRNA
Length=3591
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 9 CAGAAGATGTAGAGC 23
|||||||||||||||
Sbjct 433 CAGAAGATGTAGAGC 419
> gi|1034627961|ref|XR_001755066.1| PREDICTED: Homo sapiens uncharacterized
LOC105372815 (LOC105372815), transcript variant
X4, ncRNA
Length=3084
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 9 CAGAAGATGTAGAGC 23
|||||||||||||||
Sbjct 433 CAGAAGATGTAGAGC 419
> gi|1034627958|ref|XR_001755064.1| PREDICTED: Homo sapiens uncharacterized
LOC105372815 (LOC105372815), transcript variant
X1, ncRNA
Length=3716
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 9 CAGAAGATGTAGAGC 23
|||||||||||||||
Sbjct 433 CAGAAGATGTAGAGC 419
> gi|1034627964|ref|XR_937755.2| PREDICTED: Homo sapiens uncharacterized
LOC105372815 (LOC105372815), transcript variant X7,
ncRNA
Length=2393
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 9 CAGAAGATGTAGAGC 23
|||||||||||||||
Sbjct 433 CAGAAGATGTAGAGC 419
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 4090065595
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2