BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= GACGCTTATGAACCTCTACTTCTCGAGAAGTAGAGGTTCATAAGCGTCTTTTTT (evalue = 10)
Length=54
Score E
Sequences producing significant alignments: (Bits) Value
gi|283135239|ref|NM_020155.3| Homo sapiens G protein-coupled re... 42.1 0.005
gi|283135241|ref|NM_001170880.1| Homo sapiens G protein-coupled... 42.1 0.005
gi|767968521|ref|XM_005274100.2| PREDICTED: Homo sapiens G prot... 42.1 0.005
gi|767968523|ref|XM_011545169.1| PREDICTED: Homo sapiens G prot... 42.1 0.005
gi|1034574555|ref|XM_017018015.1| PREDICTED: Homo sapiens G pro... 42.1 0.005
gi|767968522|ref|XM_005274104.2| PREDICTED: Homo sapiens G prot... 42.1 0.005
gi|767968520|ref|XM_005274102.2| PREDICTED: Homo sapiens G prot... 42.1 0.005
gi|283135213|ref|NM_001170881.1| Homo sapiens G protein-coupled... 42.1 0.005
gi|293629301|ref|NM_001177358.1| Homo sapiens G protein-coupled... 42.1 0.005
gi|767968519|ref|XM_005274101.2| PREDICTED: Homo sapiens G prot... 42.1 0.005
gi|1034574553|ref|XM_017018014.1| PREDICTED: Homo sapiens G pro... 42.1 0.005
gi|283135191|ref|NM_001170726.1| Homo sapiens G protein-coupled... 42.1 0.005
gi|1034574557|ref|XM_017018016.1| PREDICTED: Homo sapiens G pro... 42.1 0.005
gi|1034574559|ref|XM_011545171.2| PREDICTED: Homo sapiens G pro... 42.1 0.005
gi|1034574560|ref|XM_011545172.2| PREDICTED: Homo sapiens G pro... 42.1 0.005
gi|1034574551|ref|XM_011545168.2| PREDICTED: Homo sapiens G pro... 42.1 0.005
gi|1034574552|ref|XM_011545170.2| PREDICTED: Homo sapiens G pro... 42.1 0.005
gi|110349724|ref|NM_198207.2| Homo sapiens ceramide synthase 1 ... 32.2 4.3
gi|594140566|ref|NM_001290265.1| Homo sapiens ceramide synthase... 32.2 4.3
gi|594140568|ref|NM_001492.5| Homo sapiens growth differentiati... 32.2 4.3
gi|594140565|ref|NM_021267.4| Homo sapiens ceramide synthase 1 ... 32.2 4.3
gi|305632786|ref|NM_024895.4| Homo sapiens PDZ domain containin... 32.2 4.3
gi|1034569591|ref|XM_017016668.1| PREDICTED: Homo sapiens PDZ d... 32.2 4.3
gi|1034569589|ref|XM_011540182.2| PREDICTED: Homo sapiens PDZ d... 32.2 4.3
gi|1034569584|ref|XM_017016667.1| PREDICTED: Homo sapiens PDZ d... 32.2 4.3
gi|1034569586|ref|XR_001747203.1| PREDICTED: Homo sapiens PDZ d... 32.2 4.3
gi|1034569590|ref|XM_011540183.2| PREDICTED: Homo sapiens PDZ d... 32.2 4.3
gi|1034569588|ref|XM_011540181.2| PREDICTED: Homo sapiens PDZ d... 32.2 4.3
gi|1034569593|ref|XR_945816.2| PREDICTED: Homo sapiens PDZ doma... 32.2 4.3
gi|1034569587|ref|XM_005270165.2| PREDICTED: Homo sapiens PDZ d... 32.2 4.3
gi|1034569583|ref|XM_011540179.2| PREDICTED: Homo sapiens PDZ d... 32.2 4.3
gi|1034569582|ref|XM_011540178.2| PREDICTED: Homo sapiens PDZ d... 32.2 4.3
gi|1034569581|ref|XM_011540177.2| PREDICTED: Homo sapiens PDZ d... 32.2 4.3
gi|305632787|ref|NM_001195263.1| Homo sapiens PDZ domain contai... 32.2 4.3
> gi|283135239|ref|NM_020155.3| Homo sapiens G protein-coupled
receptor 137 (GPR137), transcript variant 3, mRNA
Length=1822
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GACGCTTATGAACCTCTACTT 21
|||||||||||||||||||||
Sbjct 745 GACGCTTATGAACCTCTACTT 765
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGTAGAGGTTCATAAGCGTC 48
|||||||||||||||||||||
Sbjct 765 AAGTAGAGGTTCATAAGCGTC 745
> gi|283135241|ref|NM_001170880.1| Homo sapiens G protein-coupled
receptor 137 (GPR137), transcript variant 2, mRNA
Length=1928
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GACGCTTATGAACCTCTACTT 21
|||||||||||||||||||||
Sbjct 745 GACGCTTATGAACCTCTACTT 765
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGTAGAGGTTCATAAGCGTC 48
|||||||||||||||||||||
Sbjct 765 AAGTAGAGGTTCATAAGCGTC 745
> gi|767968521|ref|XM_005274100.2| PREDICTED: Homo sapiens G protein-coupled
receptor 137 (GPR137), transcript variant X4,
mRNA
Length=1813
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GACGCTTATGAACCTCTACTT 21
|||||||||||||||||||||
Sbjct 760 GACGCTTATGAACCTCTACTT 780
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGTAGAGGTTCATAAGCGTC 48
|||||||||||||||||||||
Sbjct 780 AAGTAGAGGTTCATAAGCGTC 760
> gi|767968523|ref|XM_011545169.1| PREDICTED: Homo sapiens G protein-coupled
receptor 137 (GPR137), transcript variant X6,
mRNA
Length=1442
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GACGCTTATGAACCTCTACTT 21
|||||||||||||||||||||
Sbjct 389 GACGCTTATGAACCTCTACTT 409
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGTAGAGGTTCATAAGCGTC 48
|||||||||||||||||||||
Sbjct 409 AAGTAGAGGTTCATAAGCGTC 389
> gi|1034574555|ref|XM_017018015.1| PREDICTED: Homo sapiens G protein-coupled
receptor 137 (GPR137), transcript variant X9,
mRNA
Length=1548
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GACGCTTATGAACCTCTACTT 21
|||||||||||||||||||||
Sbjct 389 GACGCTTATGAACCTCTACTT 409
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGTAGAGGTTCATAAGCGTC 48
|||||||||||||||||||||
Sbjct 409 AAGTAGAGGTTCATAAGCGTC 389
> gi|767968522|ref|XM_005274104.2| PREDICTED: Homo sapiens G protein-coupled
receptor 137 (GPR137), transcript variant X5,
mRNA
Length=1477
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GACGCTTATGAACCTCTACTT 21
|||||||||||||||||||||
Sbjct 424 GACGCTTATGAACCTCTACTT 444
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGTAGAGGTTCATAAGCGTC 48
|||||||||||||||||||||
Sbjct 444 AAGTAGAGGTTCATAAGCGTC 424
> gi|767968520|ref|XM_005274102.2| PREDICTED: Homo sapiens G protein-coupled
receptor 137 (GPR137), transcript variant X3,
mRNA
Length=1529
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GACGCTTATGAACCTCTACTT 21
|||||||||||||||||||||
Sbjct 476 GACGCTTATGAACCTCTACTT 496
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGTAGAGGTTCATAAGCGTC 48
|||||||||||||||||||||
Sbjct 496 AAGTAGAGGTTCATAAGCGTC 476
> gi|283135213|ref|NM_001170881.1| Homo sapiens G protein-coupled
receptor 137 (GPR137), transcript variant 1, mRNA
Length=1946
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GACGCTTATGAACCTCTACTT 21
|||||||||||||||||||||
Sbjct 913 GACGCTTATGAACCTCTACTT 933
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGTAGAGGTTCATAAGCGTC 48
|||||||||||||||||||||
Sbjct 933 AAGTAGAGGTTCATAAGCGTC 913
> gi|293629301|ref|NM_001177358.1| Homo sapiens G protein-coupled
receptor 137 (GPR137), transcript variant 5, mRNA
Length=1861
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GACGCTTATGAACCTCTACTT 21
|||||||||||||||||||||
Sbjct 797 GACGCTTATGAACCTCTACTT 817
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGTAGAGGTTCATAAGCGTC 48
|||||||||||||||||||||
Sbjct 817 AAGTAGAGGTTCATAAGCGTC 797
> gi|767968519|ref|XM_005274101.2| PREDICTED: Homo sapiens G protein-coupled
receptor 137 (GPR137), transcript variant X2,
mRNA
Length=2013
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GACGCTTATGAACCTCTACTT 21
|||||||||||||||||||||
Sbjct 960 GACGCTTATGAACCTCTACTT 980
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGTAGAGGTTCATAAGCGTC 48
|||||||||||||||||||||
Sbjct 980 AAGTAGAGGTTCATAAGCGTC 960
> gi|1034574553|ref|XM_017018014.1| PREDICTED: Homo sapiens G protein-coupled
receptor 137 (GPR137), transcript variant X8,
mRNA
Length=2119
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GACGCTTATGAACCTCTACTT 21
|||||||||||||||||||||
Sbjct 960 GACGCTTATGAACCTCTACTT 980
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGTAGAGGTTCATAAGCGTC 48
|||||||||||||||||||||
Sbjct 980 AAGTAGAGGTTCATAAGCGTC 960
> gi|283135191|ref|NM_001170726.1| Homo sapiens G protein-coupled
receptor 137 (GPR137), transcript variant 4, mRNA
Length=1609
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GACGCTTATGAACCTCTACTT 21
|||||||||||||||||||||
Sbjct 532 GACGCTTATGAACCTCTACTT 552
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGTAGAGGTTCATAAGCGTC 48
|||||||||||||||||||||
Sbjct 552 AAGTAGAGGTTCATAAGCGTC 532
> gi|1034574557|ref|XM_017018016.1| PREDICTED: Homo sapiens G protein-coupled
receptor 137 (GPR137), transcript variant X10,
mRNA
Length=1573
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GACGCTTATGAACCTCTACTT 21
|||||||||||||||||||||
Sbjct 670 GACGCTTATGAACCTCTACTT 690
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGTAGAGGTTCATAAGCGTC 48
|||||||||||||||||||||
Sbjct 690 AAGTAGAGGTTCATAAGCGTC 670
> gi|1034574559|ref|XM_011545171.2| PREDICTED: Homo sapiens G protein-coupled
receptor 137 (GPR137), transcript variant X11,
mRNA
Length=1679
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GACGCTTATGAACCTCTACTT 21
|||||||||||||||||||||
Sbjct 670 GACGCTTATGAACCTCTACTT 690
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGTAGAGGTTCATAAGCGTC 48
|||||||||||||||||||||
Sbjct 690 AAGTAGAGGTTCATAAGCGTC 670
> gi|1034574560|ref|XM_011545172.2| PREDICTED: Homo sapiens G protein-coupled
receptor 137 (GPR137), transcript variant X12,
mRNA
Length=1710
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GACGCTTATGAACCTCTACTT 21
|||||||||||||||||||||
Sbjct 670 GACGCTTATGAACCTCTACTT 690
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGTAGAGGTTCATAAGCGTC 48
|||||||||||||||||||||
Sbjct 690 AAGTAGAGGTTCATAAGCGTC 670
> gi|1034574551|ref|XM_011545168.2| PREDICTED: Homo sapiens G protein-coupled
receptor 137 (GPR137), transcript variant X1,
mRNA
Length=1723
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GACGCTTATGAACCTCTACTT 21
|||||||||||||||||||||
Sbjct 670 GACGCTTATGAACCTCTACTT 690
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGTAGAGGTTCATAAGCGTC 48
|||||||||||||||||||||
Sbjct 690 AAGTAGAGGTTCATAAGCGTC 670
> gi|1034574552|ref|XM_011545170.2| PREDICTED: Homo sapiens G protein-coupled
receptor 137 (GPR137), transcript variant X7,
mRNA
Length=1829
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 GACGCTTATGAACCTCTACTT 21
|||||||||||||||||||||
Sbjct 670 GACGCTTATGAACCTCTACTT 690
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGTAGAGGTTCATAAGCGTC 48
|||||||||||||||||||||
Sbjct 690 AAGTAGAGGTTCATAAGCGTC 670
> gi|110349724|ref|NM_198207.2| Homo sapiens ceramide synthase
1 (CERS1), transcript variant 2, mRNA
Length=2137
Score = 32.2 bits (16), Expect = 4.3
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 5 CTTATGAACCTCTACT 20
||||||||||||||||
Sbjct 949 CTTATGAACCTCTACT 964
Score = 32.2 bits (16), Expect = 4.3
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 29 AGTAGAGGTTCATAAG 44
||||||||||||||||
Sbjct 964 AGTAGAGGTTCATAAG 949
> gi|594140566|ref|NM_001290265.1| Homo sapiens ceramide synthase
1 (CERS1), transcript variant 3, mRNA
Length=1983
Score = 32.2 bits (16), Expect = 4.3
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 5 CTTATGAACCTCTACT 20
||||||||||||||||
Sbjct 795 CTTATGAACCTCTACT 810
Score = 32.2 bits (16), Expect = 4.3
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 29 AGTAGAGGTTCATAAG 44
||||||||||||||||
Sbjct 810 AGTAGAGGTTCATAAG 795
> gi|594140568|ref|NM_001492.5| Homo sapiens growth differentiation
factor 1 (GDF1), mRNA
Length=2564
Score = 32.2 bits (16), Expect = 4.3
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 5 CTTATGAACCTCTACT 20
||||||||||||||||
Sbjct 949 CTTATGAACCTCTACT 964
Score = 32.2 bits (16), Expect = 4.3
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 29 AGTAGAGGTTCATAAG 44
||||||||||||||||
Sbjct 964 AGTAGAGGTTCATAAG 949
> gi|594140565|ref|NM_021267.4| Homo sapiens ceramide synthase
1 (CERS1), transcript variant 1, mRNA
Length=2564
Score = 32.2 bits (16), Expect = 4.3
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 5 CTTATGAACCTCTACT 20
||||||||||||||||
Sbjct 949 CTTATGAACCTCTACT 964
Score = 32.2 bits (16), Expect = 4.3
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 29 AGTAGAGGTTCATAAG 44
||||||||||||||||
Sbjct 964 AGTAGAGGTTCATAAG 949
> gi|305632786|ref|NM_024895.4| Homo sapiens PDZ domain containing
7 (PDZD7), transcript variant 2, mRNA
Length=2072
Score = 32.2 bits (16), Expect = 4.3
Identities = 22/24 (92%), Gaps = 0/24 (0%)
Strand=Plus/Minus
Query 27 GAAGTAGAGGTTCATAAGCGTCTT 50
|||| |||||||||| ||||||||
Sbjct 1666 GAAGAAGAGGTTCATCAGCGTCTT 1643
> gi|1034569591|ref|XM_017016668.1| PREDICTED: Homo sapiens PDZ
domain containing 7 (PDZD7), transcript variant X10, mRNA
Length=3217
Score = 32.2 bits (16), Expect = 4.3
Identities = 22/24 (92%), Gaps = 0/24 (0%)
Strand=Plus/Minus
Query 27 GAAGTAGAGGTTCATAAGCGTCTT 50
|||| |||||||||| ||||||||
Sbjct 1669 GAAGAAGAGGTTCATCAGCGTCTT 1646
> gi|1034569589|ref|XM_011540182.2| PREDICTED: Homo sapiens PDZ
domain containing 7 (PDZD7), transcript variant X8, mRNA
Length=3049
Score = 32.2 bits (16), Expect = 4.3
Identities = 22/24 (92%), Gaps = 0/24 (0%)
Strand=Plus/Minus
Query 27 GAAGTAGAGGTTCATAAGCGTCTT 50
|||| |||||||||| ||||||||
Sbjct 1669 GAAGAAGAGGTTCATCAGCGTCTT 1646
> gi|1034569584|ref|XM_017016667.1| PREDICTED: Homo sapiens PDZ
domain containing 7 (PDZD7), transcript variant X4, mRNA
Length=3189
Score = 32.2 bits (16), Expect = 4.3
Identities = 22/24 (92%), Gaps = 0/24 (0%)
Strand=Plus/Minus
Query 27 GAAGTAGAGGTTCATAAGCGTCTT 50
|||| |||||||||| ||||||||
Sbjct 1641 GAAGAAGAGGTTCATCAGCGTCTT 1618
> gi|1034569586|ref|XR_001747203.1| PREDICTED: Homo sapiens PDZ
domain containing 7 (PDZD7), transcript variant X5, misc_RNA
Length=3203
Score = 32.2 bits (16), Expect = 4.3
Identities = 22/24 (92%), Gaps = 0/24 (0%)
Strand=Plus/Minus
Query 27 GAAGTAGAGGTTCATAAGCGTCTT 50
|||| |||||||||| ||||||||
Sbjct 1641 GAAGAAGAGGTTCATCAGCGTCTT 1618
> gi|1034569590|ref|XM_011540183.2| PREDICTED: Homo sapiens PDZ
domain containing 7 (PDZD7), transcript variant X9, mRNA
Length=1914
Score = 32.2 bits (16), Expect = 4.3
Identities = 22/24 (92%), Gaps = 0/24 (0%)
Strand=Plus/Minus
Query 27 GAAGTAGAGGTTCATAAGCGTCTT 50
|||| |||||||||| ||||||||
Sbjct 1669 GAAGAAGAGGTTCATCAGCGTCTT 1646
> gi|1034569588|ref|XM_011540181.2| PREDICTED: Homo sapiens PDZ
domain containing 7 (PDZD7), transcript variant X7, mRNA
Length=1985
Score = 32.2 bits (16), Expect = 4.3
Identities = 22/24 (92%), Gaps = 0/24 (0%)
Strand=Plus/Minus
Query 27 GAAGTAGAGGTTCATAAGCGTCTT 50
|||| |||||||||| ||||||||
Sbjct 1641 GAAGAAGAGGTTCATCAGCGTCTT 1618
> gi|1034569593|ref|XR_945816.2| PREDICTED: Homo sapiens PDZ domain
containing 7 (PDZD7), transcript variant X11, misc_RNA
Length=1959
Score = 32.2 bits (16), Expect = 4.3
Identities = 22/24 (92%), Gaps = 0/24 (0%)
Strand=Plus/Minus
Query 27 GAAGTAGAGGTTCATAAGCGTCTT 50
|||| |||||||||| ||||||||
Sbjct 1669 GAAGAAGAGGTTCATCAGCGTCTT 1646
> gi|1034569587|ref|XM_005270165.2| PREDICTED: Homo sapiens PDZ
domain containing 7 (PDZD7), transcript variant X6, mRNA
Length=2654
Score = 32.2 bits (16), Expect = 4.3
Identities = 22/24 (92%), Gaps = 0/24 (0%)
Strand=Plus/Minus
Query 27 GAAGTAGAGGTTCATAAGCGTCTT 50
|||| |||||||||| ||||||||
Sbjct 1641 GAAGAAGAGGTTCATCAGCGTCTT 1618
> gi|1034569583|ref|XM_011540179.2| PREDICTED: Homo sapiens PDZ
domain containing 7 (PDZD7), transcript variant X3, mRNA
Length=2352
Score = 32.2 bits (16), Expect = 4.3
Identities = 22/24 (92%), Gaps = 0/24 (0%)
Strand=Plus/Minus
Query 27 GAAGTAGAGGTTCATAAGCGTCTT 50
|||| |||||||||| ||||||||
Sbjct 1641 GAAGAAGAGGTTCATCAGCGTCTT 1618
> gi|1034569582|ref|XM_011540178.2| PREDICTED: Homo sapiens PDZ
domain containing 7 (PDZD7), transcript variant X2, mRNA
Length=4102
Score = 32.2 bits (16), Expect = 4.3
Identities = 22/24 (92%), Gaps = 0/24 (0%)
Strand=Plus/Minus
Query 27 GAAGTAGAGGTTCATAAGCGTCTT 50
|||| |||||||||| ||||||||
Sbjct 1641 GAAGAAGAGGTTCATCAGCGTCTT 1618
> gi|1034569581|ref|XM_011540177.2| PREDICTED: Homo sapiens PDZ
domain containing 7 (PDZD7), transcript variant X1, mRNA
Length=4290
Score = 32.2 bits (16), Expect = 4.3
Identities = 22/24 (92%), Gaps = 0/24 (0%)
Strand=Plus/Minus
Query 27 GAAGTAGAGGTTCATAAGCGTCTT 50
|||| |||||||||| ||||||||
Sbjct 1826 GAAGAAGAGGTTCATCAGCGTCTT 1803
> gi|305632787|ref|NM_001195263.1| Homo sapiens PDZ domain containing
7 (PDZD7), transcript variant 1, mRNA
Length=4164
Score = 32.2 bits (16), Expect = 4.3
Identities = 22/24 (92%), Gaps = 0/24 (0%)
Strand=Plus/Minus
Query 27 GAAGTAGAGGTTCATAAGCGTCTT 50
|||| |||||||||| ||||||||
Sbjct 1666 GAAGAAGAGGTTCATCAGCGTCTT 1643
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 21612390383
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2