BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= GACCATTCCTGTGATCATTTCCTCGAGGAAATGATCACAGGAATGGTC (evalue = 10)
Length=48
Score E
Sequences producing significant alignments: (Bits) Value
gi|1034616490|ref|XM_011511808.2| PREDICTED: Homo sapiens inter... 44.1 0.001
gi|1034616487|ref|XR_923024.2| PREDICTED: Homo sapiens interleu... 44.1 0.001
gi|1034616481|ref|XM_011511801.2| PREDICTED: Homo sapiens inter... 44.1 0.001
gi|1034616485|ref|XM_011511804.2| PREDICTED: Homo sapiens inter... 44.1 0.001
gi|1034616486|ref|XM_011511805.2| PREDICTED: Homo sapiens inter... 44.1 0.001
gi|387527982|ref|NR_048564.1| Homo sapiens interleukin 1 recept... 44.1 0.001
gi|1034616483|ref|XM_011511803.2| PREDICTED: Homo sapiens inter... 44.1 0.001
gi|387527983|ref|NM_001261419.1| Homo sapiens interleukin 1 rec... 44.1 0.001
gi|27894332|ref|NM_004633.3| Homo sapiens interleukin 1 recepto... 44.1 0.001
gi|1034616488|ref|XM_017004889.1| PREDICTED: Homo sapiens inter... 44.1 0.001
gi|1034616484|ref|XM_006712734.3| PREDICTED: Homo sapiens inter... 44.1 0.001
gi|1034616482|ref|XM_006712736.3| PREDICTED: Homo sapiens inter... 44.1 0.001
> gi|1034616490|ref|XM_011511808.2| PREDICTED: Homo sapiens interleukin
1 receptor type 2 (IL1R2), transcript variant X10,
mRNA
Length=1115
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 1 GACCATTCCTGTGATCATTTCC 22
||||||||||||||||||||||
Sbjct 586 GACCATTCCTGTGATCATTTCC 607
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 27 GGAAATGATCACAGGAATGGTC 48
||||||||||||||||||||||
Sbjct 607 GGAAATGATCACAGGAATGGTC 586
> gi|1034616487|ref|XR_923024.2| PREDICTED: Homo sapiens interleukin
1 receptor type 2 (IL1R2), transcript variant X7, misc_RNA
Length=3583
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 1 GACCATTCCTGTGATCATTTCC 22
||||||||||||||||||||||
Sbjct 3291 GACCATTCCTGTGATCATTTCC 3312
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 27 GGAAATGATCACAGGAATGGTC 48
||||||||||||||||||||||
Sbjct 3312 GGAAATGATCACAGGAATGGTC 3291
> gi|1034616481|ref|XM_011511801.2| PREDICTED: Homo sapiens interleukin
1 receptor type 2 (IL1R2), transcript variant X1, mRNA
Length=3938
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 1 GACCATTCCTGTGATCATTTCC 22
||||||||||||||||||||||
Sbjct 3291 GACCATTCCTGTGATCATTTCC 3312
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 27 GGAAATGATCACAGGAATGGTC 48
||||||||||||||||||||||
Sbjct 3312 GGAAATGATCACAGGAATGGTC 3291
> gi|1034616485|ref|XM_011511804.2| PREDICTED: Homo sapiens interleukin
1 receptor type 2 (IL1R2), transcript variant X5, mRNA
Length=1510
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 1 GACCATTCCTGTGATCATTTCC 22
||||||||||||||||||||||
Sbjct 984 GACCATTCCTGTGATCATTTCC 1005
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 27 GGAAATGATCACAGGAATGGTC 48
||||||||||||||||||||||
Sbjct 1005 GGAAATGATCACAGGAATGGTC 984
> gi|1034616486|ref|XM_011511805.2| PREDICTED: Homo sapiens interleukin
1 receptor type 2 (IL1R2), transcript variant X6, mRNA
Length=2283
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 1 GACCATTCCTGTGATCATTTCC 22
||||||||||||||||||||||
Sbjct 1757 GACCATTCCTGTGATCATTTCC 1778
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 27 GGAAATGATCACAGGAATGGTC 48
||||||||||||||||||||||
Sbjct 1778 GGAAATGATCACAGGAATGGTC 1757
> gi|387527982|ref|NR_048564.1| Homo sapiens interleukin 1 receptor
type 2 (IL1R2), transcript variant 2, non-coding RNA
Length=1463
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 1 GACCATTCCTGTGATCATTTCC 22
||||||||||||||||||||||
Sbjct 918 GACCATTCCTGTGATCATTTCC 939
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 27 GGAAATGATCACAGGAATGGTC 48
||||||||||||||||||||||
Sbjct 939 GGAAATGATCACAGGAATGGTC 918
> gi|1034616483|ref|XM_011511803.2| PREDICTED: Homo sapiens interleukin
1 receptor type 2 (IL1R2), transcript variant X3, mRNA
Length=3396
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 1 GACCATTCCTGTGATCATTTCC 22
||||||||||||||||||||||
Sbjct 2870 GACCATTCCTGTGATCATTTCC 2891
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 27 GGAAATGATCACAGGAATGGTC 48
||||||||||||||||||||||
Sbjct 2891 GGAAATGATCACAGGAATGGTC 2870
> gi|387527983|ref|NM_001261419.1| Homo sapiens interleukin 1 receptor
type 2 (IL1R2), transcript variant 3, mRNA
Length=1204
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 1 GACCATTCCTGTGATCATTTCC 22
||||||||||||||||||||||
Sbjct 931 GACCATTCCTGTGATCATTTCC 952
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 27 GGAAATGATCACAGGAATGGTC 48
||||||||||||||||||||||
Sbjct 952 GGAAATGATCACAGGAATGGTC 931
> gi|27894332|ref|NM_004633.3| Homo sapiens interleukin 1 receptor
type 2 (IL1R2), transcript variant 1, mRNA
Length=1484
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 1 GACCATTCCTGTGATCATTTCC 22
||||||||||||||||||||||
Sbjct 931 GACCATTCCTGTGATCATTTCC 952
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 27 GGAAATGATCACAGGAATGGTC 48
||||||||||||||||||||||
Sbjct 952 GGAAATGATCACAGGAATGGTC 931
> gi|1034616488|ref|XM_017004889.1| PREDICTED: Homo sapiens interleukin
1 receptor type 2 (IL1R2), transcript variant X8, mRNA
Length=1367
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 1 GACCATTCCTGTGATCATTTCC 22
||||||||||||||||||||||
Sbjct 841 GACCATTCCTGTGATCATTTCC 862
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 27 GGAAATGATCACAGGAATGGTC 48
||||||||||||||||||||||
Sbjct 862 GGAAATGATCACAGGAATGGTC 841
> gi|1034616484|ref|XM_006712734.3| PREDICTED: Homo sapiens interleukin
1 receptor type 2 (IL1R2), transcript variant X4, mRNA
Length=1481
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 1 GACCATTCCTGTGATCATTTCC 22
||||||||||||||||||||||
Sbjct 955 GACCATTCCTGTGATCATTTCC 976
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 27 GGAAATGATCACAGGAATGGTC 48
||||||||||||||||||||||
Sbjct 976 GGAAATGATCACAGGAATGGTC 955
> gi|1034616482|ref|XM_006712736.3| PREDICTED: Homo sapiens interleukin
1 receptor type 2 (IL1R2), transcript variant X2, mRNA
Length=1518
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 1 GACCATTCCTGTGATCATTTCC 22
||||||||||||||||||||||
Sbjct 992 GACCATTCCTGTGATCATTTCC 1013
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 27 GGAAATGATCACAGGAATGGTC 48
||||||||||||||||||||||
Sbjct 1013 GGAAATGATCACAGGAATGGTC 992
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 18107678429
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2