BLASTN 2.4.0+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Database: rna.fa
           176,426 sequences; 587,117,901 total letters



Query= GAATATCTCGAGATATTCTTTCAAACCCTCCGCTTTTTT (evalue = 10)

Length=39
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  gi|345197263|ref|NM_001243892.1| Homo sapiens tumor protein D52...  42.1    0.003
  gi|345197261|ref|NM_001243891.1| Homo sapiens tumor protein D52...  42.1    0.003
  gi|345197267|ref|NM_001243894.1| Homo sapiens tumor protein D52...  42.1    0.003
  gi|345197259|ref|NM_199359.2| Homo sapiens tumor protein D52 li...  42.1    0.003
  gi|345197256|ref|NM_199363.2| Homo sapiens tumor protein D52 li...  42.1    0.003
  gi|345197254|ref|NM_199361.2| Homo sapiens tumor protein D52 li...  42.1    0.003
  gi|345199272|ref|NR_045090.1| Homo sapiens tumor protein D52 li...  42.1    0.003
  gi|345198269|ref|NM_001243895.1| Homo sapiens tumor protein D52...  42.1    0.003
  gi|345197255|ref|NM_003288.3| Homo sapiens tumor protein D52 li...  42.1    0.003
  gi|345197253|ref|NM_199362.2| Homo sapiens tumor protein D52 li...  42.1    0.003
  gi|345128623|ref|NM_199360.2| Homo sapiens tumor protein D52 li...  42.1    0.003


> gi|345197263|ref|NM_001243892.1| Homo sapiens tumor protein D52 
like 2 (TPD52L2), transcript variant 8, mRNA
Length=2230

 Score = 42.1 bits (21),  Expect = 0.003
 Identities = 21/21 (100%), Gaps = 0/21 (0%)
 Strand=Plus/Minus

Query  13   ATATTCTTTCAAACCCTCCGC  33
            |||||||||||||||||||||
Sbjct  914  ATATTCTTTCAAACCCTCCGC  894


> gi|345197261|ref|NM_001243891.1| Homo sapiens tumor protein D52 
like 2 (TPD52L2), transcript variant 7, mRNA
Length=2284

 Score = 42.1 bits (21),  Expect = 0.003
 Identities = 21/21 (100%), Gaps = 0/21 (0%)
 Strand=Plus/Minus

Query  13   ATATTCTTTCAAACCCTCCGC  33
            |||||||||||||||||||||
Sbjct  968  ATATTCTTTCAAACCCTCCGC  948


> gi|345197267|ref|NM_001243894.1| Homo sapiens tumor protein D52 
like 2 (TPD52L2), transcript variant 9, mRNA
Length=2197

 Score = 42.1 bits (21),  Expect = 0.003
 Identities = 21/21 (100%), Gaps = 0/21 (0%)
 Strand=Plus/Minus

Query  13   ATATTCTTTCAAACCCTCCGC  33
            |||||||||||||||||||||
Sbjct  881  ATATTCTTTCAAACCCTCCGC  861


> gi|345197259|ref|NM_199359.2| Homo sapiens tumor protein D52 
like 2 (TPD52L2), transcript variant 6, mRNA
Length=2299

 Score = 42.1 bits (21),  Expect = 0.003
 Identities = 21/21 (100%), Gaps = 0/21 (0%)
 Strand=Plus/Minus

Query  13   ATATTCTTTCAAACCCTCCGC  33
            |||||||||||||||||||||
Sbjct  983  ATATTCTTTCAAACCCTCCGC  963


> gi|345197256|ref|NM_199363.2| Homo sapiens tumor protein D52 
like 2 (TPD52L2), transcript variant 4, mRNA
Length=2341

 Score = 42.1 bits (21),  Expect = 0.003
 Identities = 21/21 (100%), Gaps = 0/21 (0%)
 Strand=Plus/Minus

Query  13    ATATTCTTTCAAACCCTCCGC  33
             |||||||||||||||||||||
Sbjct  1025  ATATTCTTTCAAACCCTCCGC  1005


> gi|345197254|ref|NM_199361.2| Homo sapiens tumor protein D52 
like 2 (TPD52L2), transcript variant 2, mRNA
Length=2368

 Score = 42.1 bits (21),  Expect = 0.003
 Identities = 21/21 (100%), Gaps = 0/21 (0%)
 Strand=Plus/Minus

Query  13    ATATTCTTTCAAACCCTCCGC  33
             |||||||||||||||||||||
Sbjct  1052  ATATTCTTTCAAACCCTCCGC  1032


> gi|345199272|ref|NR_045090.1| Homo sapiens tumor protein D52 
like 2 (TPD52L2), transcript variant 11, non-coding RNA
Length=2328

 Score = 42.1 bits (21),  Expect = 0.003
 Identities = 21/21 (100%), Gaps = 0/21 (0%)
 Strand=Plus/Minus

Query  13    ATATTCTTTCAAACCCTCCGC  33
             |||||||||||||||||||||
Sbjct  1012  ATATTCTTTCAAACCCTCCGC  992


> gi|345198269|ref|NM_001243895.1| Homo sapiens tumor protein D52 
like 2 (TPD52L2), transcript variant 10, mRNA
Length=2310

 Score = 42.1 bits (21),  Expect = 0.003
 Identities = 21/21 (100%), Gaps = 0/21 (0%)
 Strand=Plus/Minus

Query  13   ATATTCTTTCAAACCCTCCGC  33
            |||||||||||||||||||||
Sbjct  994  ATATTCTTTCAAACCCTCCGC  974


> gi|345197255|ref|NM_003288.3| Homo sapiens tumor protein D52 
like 2 (TPD52L2), transcript variant 5, mRNA
Length=2359

 Score = 42.1 bits (21),  Expect = 0.003
 Identities = 21/21 (100%), Gaps = 0/21 (0%)
 Strand=Plus/Minus

Query  13    ATATTCTTTCAAACCCTCCGC  33
             |||||||||||||||||||||
Sbjct  1043  ATATTCTTTCAAACCCTCCGC  1023


> gi|345197253|ref|NM_199362.2| Homo sapiens tumor protein D52 
like 2 (TPD52L2), transcript variant 3, mRNA
Length=2401

 Score = 42.1 bits (21),  Expect = 0.003
 Identities = 21/21 (100%), Gaps = 0/21 (0%)
 Strand=Plus/Minus

Query  13    ATATTCTTTCAAACCCTCCGC  33
             |||||||||||||||||||||
Sbjct  1085  ATATTCTTTCAAACCCTCCGC  1065


> gi|345128623|ref|NM_199360.2| Homo sapiens tumor protein D52 
like 2 (TPD52L2), transcript variant 1, mRNA
Length=2428

 Score = 42.1 bits (21),  Expect = 0.003
 Identities = 21/21 (100%), Gaps = 0/21 (0%)
 Strand=Plus/Minus

Query  13    ATATTCTTTCAAACCCTCCGC  33
             |||||||||||||||||||||
Sbjct  1112  ATATTCTTTCAAACCCTCCGC  1092



Lambda      K        H
    1.37    0.711     1.31 

Gapped
Lambda      K        H
    1.37    0.711     1.31 

Effective search space used: 12850610498


  Database: rna.fa
    Posted date:  Jan 6, 2017  3:58 PM
  Number of letters in database: 587,117,901
  Number of sequences in database:  176,426



Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2