BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= GAAGGCGGCTGGGACTGC (evalue = 10)
Length=18
Score E
Sequences producing significant alignments: (Bits) Value
gi|1034664461|ref|XR_929738.2| PREDICTED: Homo sapiens prostagl... 36.2 0.023
gi|1034664463|ref|XM_011518394.2| PREDICTED: Homo sapiens prost... 36.2 0.023
gi|226059158|ref|NM_001146108.1| Homo sapiens prostaglandin red... 36.2 0.023
gi|226056129|ref|NM_001146109.1| Homo sapiens prostaglandin red... 36.2 0.023
gi|1034690191|ref|XR_920295.2| PREDICTED: Homo sapiens uncharac... 32.2 0.35
gi|1034626653|ref|XR_936966.2| PREDICTED: Homo sapiens uncharac... 32.2 0.35
gi|1034607654|ref|XM_011526882.2| PREDICTED: Homo sapiens gliom... 30.2 1.4
gi|1034607655|ref|XM_011526883.2| PREDICTED: Homo sapiens gliom... 30.2 1.4
gi|1034607653|ref|XM_005258833.4| PREDICTED: Homo sapiens gliom... 30.2 1.4
gi|163914391|ref|NM_015711.3| Homo sapiens glioma tumor suppres... 30.2 1.4
gi|1034592867|ref|XR_001751616.1| PREDICTED: Homo sapiens uncha... 30.2 1.4
gi|349501105|ref|NM_021072.3| Homo sapiens hyperpolarization ac... 30.2 1.4
gi|194394138|ref|NM_178493.5| Homo sapiens NOTUM, palmitoleoyl-... 28.2 5.5
gi|395759205|ref|NM_006738.5| Homo sapiens A-kinase anchoring p... 28.2 5.5
gi|395627647|ref|NM_007200.4| Homo sapiens A-kinase anchoring p... 28.2 5.5
gi|1034648754|ref|XM_017010350.1| PREDICTED: Homo sapiens eryth... 28.2 5.5
gi|1034648770|ref|XM_017010357.1| PREDICTED: Homo sapiens eryth... 28.2 5.5
gi|1034648783|ref|XM_017010362.1| PREDICTED: Homo sapiens eryth... 28.2 5.5
gi|1034648785|ref|XM_017010363.1| PREDICTED: Homo sapiens eryth... 28.2 5.5
gi|358030306|ref|NM_001199388.2| Homo sapiens erythrocyte membr... 28.2 5.5
gi|358030305|ref|NM_001135555.3| Homo sapiens erythrocyte membr... 28.2 5.5
gi|1034648778|ref|XR_001743215.1| PREDICTED: Homo sapiens eryth... 28.2 5.5
gi|767942104|ref|XM_011535524.1| PREDICTED: Homo sapiens erythr... 28.2 5.5
gi|1034648767|ref|XM_017010356.1| PREDICTED: Homo sapiens eryth... 28.2 5.5
gi|1034648779|ref|XR_001743216.1| PREDICTED: Homo sapiens eryth... 28.2 5.5
gi|1034648780|ref|XR_001743217.1| PREDICTED: Homo sapiens eryth... 28.2 5.5
gi|767942106|ref|XM_011535525.1| PREDICTED: Homo sapiens erythr... 28.2 5.5
gi|767942110|ref|XM_011535527.1| PREDICTED: Homo sapiens erythr... 28.2 5.5
gi|207113193|ref|NM_001431.3| Homo sapiens erythrocyte membrane... 28.2 5.5
gi|1034648763|ref|XM_017010354.1| PREDICTED: Homo sapiens eryth... 28.2 5.5
gi|767942112|ref|XM_011535528.1| PREDICTED: Homo sapiens erythr... 28.2 5.5
gi|1034648772|ref|XM_017010358.1| PREDICTED: Homo sapiens eryth... 28.2 5.5
gi|767942114|ref|XM_011535529.1| PREDICTED: Homo sapiens erythr... 28.2 5.5
gi|767942116|ref|XM_011535530.1| PREDICTED: Homo sapiens erythr... 28.2 5.5
gi|767942125|ref|XM_011535534.1| PREDICTED: Homo sapiens erythr... 28.2 5.5
gi|767942129|ref|XM_011535536.1| PREDICTED: Homo sapiens erythr... 28.2 5.5
gi|207113194|ref|NM_001135554.1| Homo sapiens erythrocyte membr... 28.2 5.5
gi|1034648761|ref|XM_017010353.1| PREDICTED: Homo sapiens eryth... 28.2 5.5
gi|1034648760|ref|XR_001743213.1| PREDICTED: Homo sapiens eryth... 28.2 5.5
gi|1034558907|ref|XR_001737207.1| PREDICTED: Homo sapiens heter... 28.2 5.5
gi|1034558902|ref|XM_005245879.4| PREDICTED: Homo sapiens heter... 28.2 5.5
gi|1034558906|ref|XR_001737206.1| PREDICTED: Homo sapiens heter... 28.2 5.5
gi|1034558897|ref|XM_005245875.4| PREDICTED: Homo sapiens heter... 28.2 5.5
gi|1034557849|ref|XM_011541281.2| PREDICTED: Homo sapiens chrom... 28.2 5.5
gi|1034557847|ref|XM_011541280.2| PREDICTED: Homo sapiens chrom... 28.2 5.5
gi|1034557839|ref|XM_011541274.2| PREDICTED: Homo sapiens chrom... 28.2 5.5
gi|1034557832|ref|XM_011541269.2| PREDICTED: Homo sapiens chrom... 28.2 5.5
gi|1034557841|ref|XM_011541275.2| PREDICTED: Homo sapiens chrom... 28.2 5.5
gi|613410224|ref|NM_001010881.1| Homo sapiens chromosome 1 open... 28.2 5.5
gi|1034557845|ref|XM_017001064.1| PREDICTED: Homo sapiens chrom... 28.2 5.5
gi|1034557844|ref|XM_011541278.2| PREDICTED: Homo sapiens chrom... 28.2 5.5
gi|1034557834|ref|XM_017001063.1| PREDICTED: Homo sapiens chrom... 28.2 5.5
gi|1034557836|ref|XM_011541271.2| PREDICTED: Homo sapiens chrom... 28.2 5.5
gi|1034557843|ref|XM_011541277.2| PREDICTED: Homo sapiens chrom... 28.2 5.5
gi|1034557838|ref|XM_011541276.2| PREDICTED: Homo sapiens chrom... 28.2 5.5
gi|1034557829|ref|XM_011541272.2| PREDICTED: Homo sapiens chrom... 28.2 5.5
gi|1034557830|ref|XM_017001062.1| PREDICTED: Homo sapiens chrom... 28.2 5.5
gi|578833122|ref|XM_006722704.1| PREDICTED: Homo sapiens SIN3 t... 28.2 5.5
gi|662236782|ref|NM_001297597.1| Homo sapiens SIN3 transcriptio... 28.2 5.5
gi|662236752|ref|NM_001297595.1| Homo sapiens SIN3 transcriptio... 28.2 5.5
gi|662236800|ref|NM_015260.3| Homo sapiens SIN3 transcription r... 28.2 5.5
gi|162951872|ref|NM_001112704.1| Homo sapiens ventral anterior ... 28.2 5.5
gi|162951871|ref|NM_199131.2| Homo sapiens ventral anterior hom... 28.2 5.5
gi|388596695|ref|NM_001227.4| Homo sapiens caspase 7 (CASP7), t... 28.2 5.5
gi|388596699|ref|NM_001267057.1| Homo sapiens caspase 7 (CASP7)... 28.2 5.5
gi|388596694|ref|NM_033339.4| Homo sapiens caspase 7 (CASP7), t... 28.2 5.5
gi|388596693|ref|NM_033338.5| Homo sapiens caspase 7 (CASP7), t... 28.2 5.5
gi|747811813|ref|NM_015051.2| Homo sapiens endoplasmic reticulu... 28.2 5.5
gi|1034672649|ref|XR_001746700.1| PREDICTED: Homo sapiens uncha... 28.2 5.5
gi|1034660911|ref|XM_017013640.1| PREDICTED: Homo sapiens phosp... 28.2 5.5
gi|63054863|ref|NM_018440.3| Homo sapiens phosphoprotein membra... 28.2 5.5
gi|1034660919|ref|XR_928792.2| PREDICTED: Homo sapiens phosphop... 28.2 5.5
> gi|1034664461|ref|XR_929738.2| PREDICTED: Homo sapiens prostaglandin
reductase 1 (PTGR1), transcript variant X1, misc_RNA
Length=1508
Score = 36.2 bits (18), Expect = 0.023
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 GAAGGCGGCTGGGACTGC 18
||||||||||||||||||
Sbjct 226 GAAGGCGGCTGGGACTGC 209
> gi|1034664463|ref|XM_011518394.2| PREDICTED: Homo sapiens prostaglandin
reductase 1 (PTGR1), transcript variant X3, mRNA
Length=1283
Score = 36.2 bits (18), Expect = 0.023
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 GAAGGCGGCTGGGACTGC 18
||||||||||||||||||
Sbjct 226 GAAGGCGGCTGGGACTGC 209
> gi|226059158|ref|NM_001146108.1| Homo sapiens prostaglandin reductase
1 (PTGR1), transcript variant 1, mRNA
Length=1409
Score = 36.2 bits (18), Expect = 0.023
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 GAAGGCGGCTGGGACTGC 18
||||||||||||||||||
Sbjct 226 GAAGGCGGCTGGGACTGC 209
> gi|226056129|ref|NM_001146109.1| Homo sapiens prostaglandin reductase
1 (PTGR1), transcript variant 3, mRNA
Length=1220
Score = 36.2 bits (18), Expect = 0.023
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 GAAGGCGGCTGGGACTGC 18
||||||||||||||||||
Sbjct 226 GAAGGCGGCTGGGACTGC 209
> gi|1034690191|ref|XR_920295.2| PREDICTED: Homo sapiens uncharacterized
LOC105372708 (LOC105372708), ncRNA
Length=4379
Score = 32.2 bits (16), Expect = 0.35
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 1 GAAGGCGGCTGGGACT 16
||||||||||||||||
Sbjct 543 GAAGGCGGCTGGGACT 558
> gi|1034626653|ref|XR_936966.2| PREDICTED: Homo sapiens uncharacterized
LOC105372708 (LOC105372708), ncRNA
Length=4375
Score = 32.2 bits (16), Expect = 0.35
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 1 GAAGGCGGCTGGGACT 16
||||||||||||||||
Sbjct 539 GAAGGCGGCTGGGACT 554
> gi|1034607654|ref|XM_011526882.2| PREDICTED: Homo sapiens glioma
tumor suppressor candidate region gene 1 (GLTSCR1), transcript
variant X2, mRNA
Length=6749
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 3 AGGCGGCTGGGACTG 17
|||||||||||||||
Sbjct 3811 AGGCGGCTGGGACTG 3797
> gi|1034607655|ref|XM_011526883.2| PREDICTED: Homo sapiens glioma
tumor suppressor candidate region gene 1 (GLTSCR1), transcript
variant X3, mRNA
Length=5605
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 3 AGGCGGCTGGGACTG 17
|||||||||||||||
Sbjct 2667 AGGCGGCTGGGACTG 2653
> gi|1034607653|ref|XM_005258833.4| PREDICTED: Homo sapiens glioma
tumor suppressor candidate region gene 1 (GLTSCR1), transcript
variant X1, mRNA
Length=5782
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 3 AGGCGGCTGGGACTG 17
|||||||||||||||
Sbjct 2844 AGGCGGCTGGGACTG 2830
> gi|163914391|ref|NM_015711.3| Homo sapiens glioma tumor suppressor
candidate region gene 1 (GLTSCR1), mRNA
Length=5741
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 3 AGGCGGCTGGGACTG 17
|||||||||||||||
Sbjct 2801 AGGCGGCTGGGACTG 2787
> gi|1034592867|ref|XR_001751616.1| PREDICTED: Homo sapiens uncharacterized
LOC107987225 (LOC107987225), ncRNA
Length=1020
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 GGCGGCTGGGACTGC 18
|||||||||||||||
Sbjct 441 GGCGGCTGGGACTGC 427
> gi|349501105|ref|NM_021072.3| Homo sapiens hyperpolarization
activated cyclic nucleotide gated potassium channel 1 (HCN1),
mRNA
Length=9685
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 GGCGGCTGGGACTGC 18
|||||||||||||||
Sbjct 2256 GGCGGCTGGGACTGC 2242
> gi|194394138|ref|NM_178493.5| Homo sapiens NOTUM, palmitoleoyl-protein
carboxylesterase (NOTUM), mRNA
Length=2281
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 1 GAAGGCGGCTGGGACTGC 18
|||||||||||| |||||
Sbjct 645 GAAGGCGGCTGGTACTGC 662
> gi|395759205|ref|NM_006738.5| Homo sapiens A-kinase anchoring
protein 13 (AKAP13), transcript variant 1, mRNA
Length=13347
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 GCGGCTGGGACTGC 18
||||||||||||||
Sbjct 710 GCGGCTGGGACTGC 723
> gi|395627647|ref|NM_007200.4| Homo sapiens A-kinase anchoring
protein 13 (AKAP13), transcript variant 2, mRNA
Length=13335
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 GCGGCTGGGACTGC 18
||||||||||||||
Sbjct 710 GCGGCTGGGACTGC 723
> gi|1034648754|ref|XM_017010350.1| PREDICTED: Homo sapiens erythrocyte
membrane protein band 4.1 like 2 (EPB41L2), transcript
variant X3, mRNA
Length=4575
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GGCGGCTGGGACTG 17
||||||||||||||
Sbjct 68 GGCGGCTGGGACTG 81
> gi|1034648770|ref|XM_017010357.1| PREDICTED: Homo sapiens erythrocyte
membrane protein band 4.1 like 2 (EPB41L2), transcript
variant X16, mRNA
Length=4209
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GGCGGCTGGGACTG 17
||||||||||||||
Sbjct 68 GGCGGCTGGGACTG 81
> gi|1034648783|ref|XM_017010362.1| PREDICTED: Homo sapiens erythrocyte
membrane protein band 4.1 like 2 (EPB41L2), transcript
variant X26, mRNA
Length=3645
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GGCGGCTGGGACTG 17
||||||||||||||
Sbjct 68 GGCGGCTGGGACTG 81
> gi|1034648785|ref|XM_017010363.1| PREDICTED: Homo sapiens erythrocyte
membrane protein band 4.1 like 2 (EPB41L2), transcript
variant X28, mRNA
Length=3550
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GGCGGCTGGGACTG 17
||||||||||||||
Sbjct 96 GGCGGCTGGGACTG 109
> gi|358030306|ref|NM_001199388.2| Homo sapiens erythrocyte membrane
protein band 4.1 like 2 (EPB41L2), transcript variant
4, mRNA
Length=4023
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GGCGGCTGGGACTG 17
||||||||||||||
Sbjct 119 GGCGGCTGGGACTG 132
> gi|358030305|ref|NM_001135555.3| Homo sapiens erythrocyte membrane
protein band 4.1 like 2 (EPB41L2), transcript variant
2, mRNA
Length=3486
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GGCGGCTGGGACTG 17
||||||||||||||
Sbjct 119 GGCGGCTGGGACTG 132
> gi|1034648778|ref|XR_001743215.1| PREDICTED: Homo sapiens erythrocyte
membrane protein band 4.1 like 2 (EPB41L2), transcript
variant X21, misc_RNA
Length=6748
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GGCGGCTGGGACTG 17
||||||||||||||
Sbjct 119 GGCGGCTGGGACTG 132
> gi|767942104|ref|XM_011535524.1| PREDICTED: Homo sapiens erythrocyte
membrane protein band 4.1 like 2 (EPB41L2), transcript
variant X1, mRNA
Length=4613
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GGCGGCTGGGACTG 17
||||||||||||||
Sbjct 119 GGCGGCTGGGACTG 132
> gi|1034648767|ref|XM_017010356.1| PREDICTED: Homo sapiens erythrocyte
membrane protein band 4.1 like 2 (EPB41L2), transcript
variant X12, mRNA
Length=4364
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GGCGGCTGGGACTG 17
||||||||||||||
Sbjct 119 GGCGGCTGGGACTG 132
> gi|1034648779|ref|XR_001743216.1| PREDICTED: Homo sapiens erythrocyte
membrane protein band 4.1 like 2 (EPB41L2), transcript
variant X22, misc_RNA
Length=4519
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GGCGGCTGGGACTG 17
||||||||||||||
Sbjct 119 GGCGGCTGGGACTG 132
> gi|1034648780|ref|XR_001743217.1| PREDICTED: Homo sapiens erythrocyte
membrane protein band 4.1 like 2 (EPB41L2), transcript
variant X23, misc_RNA
Length=4270
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GGCGGCTGGGACTG 17
||||||||||||||
Sbjct 119 GGCGGCTGGGACTG 132
> gi|767942106|ref|XM_011535525.1| PREDICTED: Homo sapiens erythrocyte
membrane protein band 4.1 like 2 (EPB41L2), transcript
variant X8, mRNA
Length=4559
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GGCGGCTGGGACTG 17
||||||||||||||
Sbjct 119 GGCGGCTGGGACTG 132
> gi|767942110|ref|XM_011535527.1| PREDICTED: Homo sapiens erythrocyte
membrane protein band 4.1 like 2 (EPB41L2), transcript
variant X10, mRNA
Length=4511
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GGCGGCTGGGACTG 17
||||||||||||||
Sbjct 119 GGCGGCTGGGACTG 132
> gi|207113193|ref|NM_001431.3| Homo sapiens erythrocyte membrane
protein band 4.1 like 2 (EPB41L2), transcript variant 1,
mRNA
Length=4457
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GGCGGCTGGGACTG 17
||||||||||||||
Sbjct 119 GGCGGCTGGGACTG 132
> gi|1034648763|ref|XM_017010354.1| PREDICTED: Homo sapiens erythrocyte
membrane protein band 4.1 like 2 (EPB41L2), transcript
variant X9, mRNA
Length=4550
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GGCGGCTGGGACTG 17
||||||||||||||
Sbjct 119 GGCGGCTGGGACTG 132
> gi|767942112|ref|XM_011535528.1| PREDICTED: Homo sapiens erythrocyte
membrane protein band 4.1 like 2 (EPB41L2), transcript
variant X13, mRNA
Length=4301
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GGCGGCTGGGACTG 17
||||||||||||||
Sbjct 119 GGCGGCTGGGACTG 132
> gi|1034648772|ref|XM_017010358.1| PREDICTED: Homo sapiens erythrocyte
membrane protein band 4.1 like 2 (EPB41L2), transcript
variant X17, mRNA
Length=4052
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GGCGGCTGGGACTG 17
||||||||||||||
Sbjct 119 GGCGGCTGGGACTG 132
> gi|767942114|ref|XM_011535529.1| PREDICTED: Homo sapiens erythrocyte
membrane protein band 4.1 like 2 (EPB41L2), transcript
variant X14, mRNA
Length=4247
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GGCGGCTGGGACTG 17
||||||||||||||
Sbjct 119 GGCGGCTGGGACTG 132
> gi|767942116|ref|XM_011535530.1| PREDICTED: Homo sapiens erythrocyte
membrane protein band 4.1 like 2 (EPB41L2), transcript
variant X18, mRNA
Length=3998
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GGCGGCTGGGACTG 17
||||||||||||||
Sbjct 119 GGCGGCTGGGACTG 132
> gi|767942125|ref|XM_011535534.1| PREDICTED: Homo sapiens erythrocyte
membrane protein band 4.1 like 2 (EPB41L2), transcript
variant X24, mRNA
Length=3683
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GGCGGCTGGGACTG 17
||||||||||||||
Sbjct 119 GGCGGCTGGGACTG 132
> gi|767942129|ref|XM_011535536.1| PREDICTED: Homo sapiens erythrocyte
membrane protein band 4.1 like 2 (EPB41L2), transcript
variant X27, mRNA
Length=3560
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GGCGGCTGGGACTG 17
||||||||||||||
Sbjct 119 GGCGGCTGGGACTG 132
> gi|207113194|ref|NM_001135554.1| Homo sapiens erythrocyte membrane
protein band 4.1 like 2 (EPB41L2), transcript variant
3, mRNA
Length=3473
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GGCGGCTGGGACTG 17
||||||||||||||
Sbjct 119 GGCGGCTGGGACTG 132
> gi|1034648761|ref|XM_017010353.1| PREDICTED: Homo sapiens erythrocyte
membrane protein band 4.1 like 2 (EPB41L2), transcript
variant X7, mRNA
Length=3625
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GGCGGCTGGGACTG 17
||||||||||||||
Sbjct 119 GGCGGCTGGGACTG 132
> gi|1034648760|ref|XR_001743213.1| PREDICTED: Homo sapiens erythrocyte
membrane protein band 4.1 like 2 (EPB41L2), transcript
variant X6, misc_RNA
Length=3759
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GGCGGCTGGGACTG 17
||||||||||||||
Sbjct 119 GGCGGCTGGGACTG 132
> gi|1034558907|ref|XR_001737207.1| PREDICTED: Homo sapiens heterochromatin
protein 1 binding protein 3 (HP1BP3), transcript
variant X12, misc_RNA
Length=3907
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GGCGGCTGGGACTG 17
||||||||||||||
Sbjct 23 GGCGGCTGGGACTG 36
> gi|1034558902|ref|XM_005245879.4| PREDICTED: Homo sapiens heterochromatin
protein 1 binding protein 3 (HP1BP3), transcript
variant X6, mRNA
Length=3821
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GGCGGCTGGGACTG 17
||||||||||||||
Sbjct 30 GGCGGCTGGGACTG 43
> gi|1034558906|ref|XR_001737206.1| PREDICTED: Homo sapiens heterochromatin
protein 1 binding protein 3 (HP1BP3), transcript
variant X11, misc_RNA
Length=4590
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GGCGGCTGGGACTG 17
||||||||||||||
Sbjct 510 GGCGGCTGGGACTG 523
> gi|1034558897|ref|XM_005245875.4| PREDICTED: Homo sapiens heterochromatin
protein 1 binding protein 3 (HP1BP3), transcript
variant X1, mRNA
Length=4497
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GGCGGCTGGGACTG 17
||||||||||||||
Sbjct 510 GGCGGCTGGGACTG 523
> gi|1034557849|ref|XM_011541281.2| PREDICTED: Homo sapiens chromosome
1 open reading frame 167 (C1orf167), transcript variant
X13, mRNA
Length=3000
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 GCGGCTGGGACTGC 18
||||||||||||||
Sbjct 2051 GCGGCTGGGACTGC 2064
> gi|1034557847|ref|XM_011541280.2| PREDICTED: Homo sapiens chromosome
1 open reading frame 167 (C1orf167), transcript variant
X12, mRNA
Length=3019
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 GCGGCTGGGACTGC 18
||||||||||||||
Sbjct 2070 GCGGCTGGGACTGC 2083
> gi|1034557839|ref|XM_011541274.2| PREDICTED: Homo sapiens chromosome
1 open reading frame 167 (C1orf167), transcript variant
X7, mRNA
Length=4786
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 GCGGCTGGGACTGC 18
||||||||||||||
Sbjct 3837 GCGGCTGGGACTGC 3850
> gi|1034557832|ref|XM_011541269.2| PREDICTED: Homo sapiens chromosome
1 open reading frame 167 (C1orf167), transcript variant
X3, mRNA
Length=4919
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 GCGGCTGGGACTGC 18
||||||||||||||
Sbjct 3970 GCGGCTGGGACTGC 3983
> gi|1034557841|ref|XM_011541275.2| PREDICTED: Homo sapiens chromosome
1 open reading frame 167 (C1orf167), transcript variant
X8, mRNA
Length=4583
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 GCGGCTGGGACTGC 18
||||||||||||||
Sbjct 3634 GCGGCTGGGACTGC 3647
> gi|613410224|ref|NM_001010881.1| Homo sapiens chromosome 1 open
reading frame 167 (C1orf167), mRNA
Length=4689
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 GCGGCTGGGACTGC 18
||||||||||||||
Sbjct 3723 GCGGCTGGGACTGC 3736
> gi|1034557845|ref|XM_017001064.1| PREDICTED: Homo sapiens chromosome
1 open reading frame 167 (C1orf167), transcript variant
X11, mRNA
Length=4141
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 GCGGCTGGGACTGC 18
||||||||||||||
Sbjct 3819 GCGGCTGGGACTGC 3832
> gi|1034557844|ref|XM_011541278.2| PREDICTED: Homo sapiens chromosome
1 open reading frame 167 (C1orf167), transcript variant
X10, mRNA
Length=4440
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 GCGGCTGGGACTGC 18
||||||||||||||
Sbjct 3819 GCGGCTGGGACTGC 3832
> gi|1034557834|ref|XM_017001063.1| PREDICTED: Homo sapiens chromosome
1 open reading frame 167 (C1orf167), transcript variant
X4, mRNA
Length=4759
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 GCGGCTGGGACTGC 18
||||||||||||||
Sbjct 3810 GCGGCTGGGACTGC 3823
> gi|1034557836|ref|XM_011541271.2| PREDICTED: Homo sapiens chromosome
1 open reading frame 167 (C1orf167), transcript variant
X5, mRNA
Length=4714
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 GCGGCTGGGACTGC 18
||||||||||||||
Sbjct 3765 GCGGCTGGGACTGC 3778
> gi|1034557843|ref|XM_011541277.2| PREDICTED: Homo sapiens chromosome
1 open reading frame 167 (C1orf167), transcript variant
X9, mRNA
Length=4579
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 GCGGCTGGGACTGC 18
||||||||||||||
Sbjct 3819 GCGGCTGGGACTGC 3832
> gi|1034557838|ref|XM_011541276.2| PREDICTED: Homo sapiens chromosome
1 open reading frame 167 (C1orf167), transcript variant
X6, mRNA
Length=4674
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 GCGGCTGGGACTGC 18
||||||||||||||
Sbjct 3819 GCGGCTGGGACTGC 3832
> gi|1034557829|ref|XM_011541272.2| PREDICTED: Homo sapiens chromosome
1 open reading frame 167 (C1orf167), transcript variant
X1, mRNA
Length=4768
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 GCGGCTGGGACTGC 18
||||||||||||||
Sbjct 3819 GCGGCTGGGACTGC 3832
> gi|1034557830|ref|XM_017001062.1| PREDICTED: Homo sapiens chromosome
1 open reading frame 167 (C1orf167), transcript variant
X2, mRNA
Length=4906
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 GCGGCTGGGACTGC 18
||||||||||||||
Sbjct 3957 GCGGCTGGGACTGC 3970
> gi|578833122|ref|XM_006722704.1| PREDICTED: Homo sapiens SIN3
transcription regulator family member B (SIN3B), transcript
variant X1, mRNA
Length=3766
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 GGCGGCTGGGACTG 17
||||||||||||||
Sbjct 3072 GGCGGCTGGGACTG 3059
> gi|662236782|ref|NM_001297597.1| Homo sapiens SIN3 transcription
regulator family member B (SIN3B), transcript variant 3,
mRNA
Length=4159
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 GGCGGCTGGGACTG 17
||||||||||||||
Sbjct 3467 GGCGGCTGGGACTG 3454
> gi|662236752|ref|NM_001297595.1| Homo sapiens SIN3 transcription
regulator family member B (SIN3B), transcript variant 2,
mRNA
Length=5053
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 GGCGGCTGGGACTG 17
||||||||||||||
Sbjct 4361 GGCGGCTGGGACTG 4348
> gi|662236800|ref|NM_015260.3| Homo sapiens SIN3 transcription
regulator family member B (SIN3B), transcript variant 1, mRNA
Length=5149
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 GGCGGCTGGGACTG 17
||||||||||||||
Sbjct 4457 GGCGGCTGGGACTG 4444
> gi|162951872|ref|NM_001112704.1| Homo sapiens ventral anterior
homeobox 1 (VAX1), transcript variant 1, mRNA
Length=1968
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 GAAGGCGGCTGGGA 14
||||||||||||||
Sbjct 374 GAAGGCGGCTGGGA 361
> gi|162951871|ref|NM_199131.2| Homo sapiens ventral anterior homeobox
1 (VAX1), transcript variant 2, mRNA
Length=4494
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 GAAGGCGGCTGGGA 14
||||||||||||||
Sbjct 374 GAAGGCGGCTGGGA 361
> gi|388596695|ref|NM_001227.4| Homo sapiens caspase 7 (CASP7),
transcript variant a, mRNA
Length=2607
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 GGCGGCTGGGACTG 17
||||||||||||||
Sbjct 293 GGCGGCTGGGACTG 280
> gi|388596699|ref|NM_001267057.1| Homo sapiens caspase 7 (CASP7),
transcript variant f, mRNA
Length=2638
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 GGCGGCTGGGACTG 17
||||||||||||||
Sbjct 293 GGCGGCTGGGACTG 280
> gi|388596694|ref|NM_033339.4| Homo sapiens caspase 7 (CASP7),
transcript variant c, mRNA
Length=2681
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 GGCGGCTGGGACTG 17
||||||||||||||
Sbjct 293 GGCGGCTGGGACTG 280
> gi|388596693|ref|NM_033338.5| Homo sapiens caspase 7 (CASP7),
transcript variant d, mRNA
Length=2714
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 GGCGGCTGGGACTG 17
||||||||||||||
Sbjct 293 GGCGGCTGGGACTG 280
> gi|747811813|ref|NM_015051.2| Homo sapiens endoplasmic reticulum
protein 44 (ERP44), mRNA
Length=4866
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 GGCGGCTGGGACTG 17
||||||||||||||
Sbjct 178 GGCGGCTGGGACTG 165
> gi|1034672649|ref|XR_001746700.1| PREDICTED: Homo sapiens uncharacterized
LOC107987077 (LOC107987077), ncRNA
Length=1432
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 GAAGGCGGCTGGGA 14
||||||||||||||
Sbjct 1059 GAAGGCGGCTGGGA 1046
> gi|1034660911|ref|XM_017013640.1| PREDICTED: Homo sapiens phosphoprotein
membrane anchor with glycosphingolipid microdomains
1 (PAG1), transcript variant X1, mRNA
Length=10694
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 GGCGGCTGGGACTG 17
||||||||||||||
Sbjct 288 GGCGGCTGGGACTG 275
> gi|63054863|ref|NM_018440.3| Homo sapiens phosphoprotein membrane
anchor with glycosphingolipid microdomains 1 (PAG1), mRNA
Length=10759
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 GGCGGCTGGGACTG 17
||||||||||||||
Sbjct 276 GGCGGCTGGGACTG 263
> gi|1034660919|ref|XR_928792.2| PREDICTED: Homo sapiens phosphoprotein
membrane anchor with glycosphingolipid microdomains
1 (PAG1), transcript variant X5, misc_RNA
Length=6142
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 GGCGGCTGGGACTG 17
||||||||||||||
Sbjct 288 GGCGGCTGGGACTG 275
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 1753414533
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2