BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= GAAAGAACAACGCCCTGGAG (evalue = 10)
Length=20
Score E
Sequences producing significant alignments: (Bits) Value
gi|442796430|ref|NM_014062.2| Homo sapiens NIN1/PSMD8 binding p... 40.1 0.002
gi|442796465|ref|NR_074074.1| Homo sapiens NIN1/PSMD8 binding p... 40.1 0.002
gi|767994443|ref|XM_011524676.1| PREDICTED: Homo sapiens endonu... 28.2 7.3
gi|767994422|ref|XM_011524666.1| PREDICTED: Homo sapiens endonu... 28.2 7.3
gi|1034599336|ref|XM_017024516.1| PREDICTED: Homo sapiens endon... 28.2 7.3
gi|767994437|ref|XM_011524673.1| PREDICTED: Homo sapiens endonu... 28.2 7.3
gi|767994445|ref|XM_011524677.1| PREDICTED: Homo sapiens endonu... 28.2 7.3
gi|767994439|ref|XM_011524674.1| PREDICTED: Homo sapiens endonu... 28.2 7.3
gi|767994435|ref|XM_011524672.1| PREDICTED: Homo sapiens endonu... 28.2 7.3
gi|1034599334|ref|XM_017024515.1| PREDICTED: Homo sapiens endon... 28.2 7.3
gi|1034599342|ref|XM_017024519.1| PREDICTED: Homo sapiens endon... 28.2 7.3
gi|1034599340|ref|XM_017024518.1| PREDICTED: Homo sapiens endon... 28.2 7.3
gi|1034599332|ref|XM_017024514.1| PREDICTED: Homo sapiens endon... 28.2 7.3
gi|1034599319|ref|XM_011524667.2| PREDICTED: Homo sapiens endon... 28.2 7.3
gi|1034599330|ref|XM_017024513.1| PREDICTED: Homo sapiens endon... 28.2 7.3
gi|1034599329|ref|XM_011524678.2| PREDICTED: Homo sapiens endon... 28.2 7.3
gi|1034599316|ref|XM_017024509.1| PREDICTED: Homo sapiens endon... 28.2 7.3
gi|1034599318|ref|XM_011524664.2| PREDICTED: Homo sapiens endon... 28.2 7.3
gi|1034599314|ref|XM_017024508.1| PREDICTED: Homo sapiens endon... 28.2 7.3
gi|1034599327|ref|XM_017024512.1| PREDICTED: Homo sapiens endon... 28.2 7.3
gi|1034599344|ref|XM_017024520.1| PREDICTED: Homo sapiens endon... 28.2 7.3
gi|767994441|ref|XM_011524675.1| PREDICTED: Homo sapiens endonu... 28.2 7.3
gi|257467549|ref|NM_001164638.1| Homo sapiens endonuclease V (E... 28.2 7.3
gi|767994408|ref|XM_011524660.1| PREDICTED: Homo sapiens endonu... 28.2 7.3
gi|1034599338|ref|XM_017024517.1| PREDICTED: Homo sapiens endon... 28.2 7.3
gi|574957042|ref|NM_001164637.2| Homo sapiens endonuclease V (E... 28.2 7.3
gi|574957139|ref|NM_173627.4| Homo sapiens endonuclease V (ENDO... 28.2 7.3
gi|1034599321|ref|XM_005257246.3| PREDICTED: Homo sapiens endon... 28.2 7.3
gi|1034599311|ref|XM_011524661.2| PREDICTED: Homo sapiens endon... 28.2 7.3
gi|1034599325|ref|XM_017024511.1| PREDICTED: Homo sapiens endon... 28.2 7.3
gi|1034599323|ref|XM_017024510.1| PREDICTED: Homo sapiens endon... 28.2 7.3
gi|1034599313|ref|XM_005257244.3| PREDICTED: Homo sapiens endon... 28.2 7.3
gi|1034599312|ref|XM_006721837.3| PREDICTED: Homo sapiens endon... 28.2 7.3
gi|767994402|ref|XM_011524657.1| PREDICTED: Homo sapiens endonu... 28.2 7.3
gi|767994414|ref|XM_011524663.1| PREDICTED: Homo sapiens endonu... 28.2 7.3
gi|767994412|ref|XM_011524662.1| PREDICTED: Homo sapiens endonu... 28.2 7.3
gi|767994400|ref|XM_011524656.1| PREDICTED: Homo sapiens endonu... 28.2 7.3
gi|767994398|ref|XM_011524655.1| PREDICTED: Homo sapiens endonu... 28.2 7.3
gi|1034599322|ref|XM_011524671.2| PREDICTED: Homo sapiens endon... 28.2 7.3
gi|767994430|ref|XM_011524670.1| PREDICTED: Homo sapiens endonu... 28.2 7.3
gi|1034599320|ref|XM_011524669.2| PREDICTED: Homo sapiens endon... 28.2 7.3
gi|1034599310|ref|XM_011524658.2| PREDICTED: Homo sapiens endon... 28.2 7.3
> gi|442796430|ref|NM_014062.2| Homo sapiens NIN1/PSMD8 binding
protein 1 homolog (NOB1), transcript variant 1, mRNA
Length=1775
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 GAAAGAACAACGCCCTGGAG 20
||||||||||||||||||||
Sbjct 1533 GAAAGAACAACGCCCTGGAG 1552
> gi|442796465|ref|NR_074074.1| Homo sapiens NIN1/PSMD8 binding
protein 1 homolog (NOB1), transcript variant 2, non-coding
RNA
Length=1644
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 GAAAGAACAACGCCCTGGAG 20
||||||||||||||||||||
Sbjct 1402 GAAAGAACAACGCCCTGGAG 1421
> gi|767994443|ref|XM_011524676.1| PREDICTED: Homo sapiens endonuclease
V (ENDOV), transcript variant X27, mRNA
Length=1483
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 AGAACAACGCCCTG 17
||||||||||||||
Sbjct 616 AGAACAACGCCCTG 629
> gi|767994422|ref|XM_011524666.1| PREDICTED: Homo sapiens endonuclease
V (ENDOV), transcript variant X14, mRNA
Length=1651
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 AGAACAACGCCCTG 17
||||||||||||||
Sbjct 751 AGAACAACGCCCTG 764
> gi|1034599336|ref|XM_017024516.1| PREDICTED: Homo sapiens endonuclease
V (ENDOV), transcript variant X33, mRNA
Length=2531
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 AGAACAACGCCCTG 17
||||||||||||||
Sbjct 230 AGAACAACGCCCTG 243
> gi|767994437|ref|XM_011524673.1| PREDICTED: Homo sapiens endonuclease
V (ENDOV), transcript variant X24, mRNA
Length=1224
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 AGAACAACGCCCTG 17
||||||||||||||
Sbjct 324 AGAACAACGCCCTG 337
> gi|767994445|ref|XM_011524677.1| PREDICTED: Homo sapiens endonuclease
V (ENDOV), transcript variant X28, mRNA
Length=1194
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 AGAACAACGCCCTG 17
||||||||||||||
Sbjct 327 AGAACAACGCCCTG 340
> gi|767994439|ref|XM_011524674.1| PREDICTED: Homo sapiens endonuclease
V (ENDOV), transcript variant X25, mRNA
Length=1234
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 AGAACAACGCCCTG 17
||||||||||||||
Sbjct 367 AGAACAACGCCCTG 380
> gi|767994435|ref|XM_011524672.1| PREDICTED: Homo sapiens endonuclease
V (ENDOV), transcript variant X23, mRNA
Length=1267
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 AGAACAACGCCCTG 17
||||||||||||||
Sbjct 367 AGAACAACGCCCTG 380
> gi|1034599334|ref|XM_017024515.1| PREDICTED: Homo sapiens endonuclease
V (ENDOV), transcript variant X32, mRNA
Length=2628
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 AGAACAACGCCCTG 17
||||||||||||||
Sbjct 327 AGAACAACGCCCTG 340
> gi|1034599342|ref|XM_017024519.1| PREDICTED: Homo sapiens endonuclease
V (ENDOV), transcript variant X36, mRNA
Length=2779
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 AGAACAACGCCCTG 17
||||||||||||||
Sbjct 327 AGAACAACGCCCTG 340
> gi|1034599340|ref|XM_017024518.1| PREDICTED: Homo sapiens endonuclease
V (ENDOV), transcript variant X35, mRNA
Length=2544
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 AGAACAACGCCCTG 17
||||||||||||||
Sbjct 367 AGAACAACGCCCTG 380
> gi|1034599332|ref|XM_017024514.1| PREDICTED: Homo sapiens endonuclease
V (ENDOV), transcript variant X31, mRNA
Length=2668
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 AGAACAACGCCCTG 17
||||||||||||||
Sbjct 367 AGAACAACGCCCTG 380
> gi|1034599319|ref|XM_011524667.2| PREDICTED: Homo sapiens endonuclease
V (ENDOV), transcript variant X15, mRNA
Length=1597
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 AGAACAACGCCCTG 17
||||||||||||||
Sbjct 697 AGAACAACGCCCTG 710
> gi|1034599330|ref|XM_017024513.1| PREDICTED: Homo sapiens endonuclease
V (ENDOV), transcript variant X30, mRNA
Length=1309
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 AGAACAACGCCCTG 17
||||||||||||||
Sbjct 442 AGAACAACGCCCTG 455
> gi|1034599329|ref|XM_011524678.2| PREDICTED: Homo sapiens endonuclease
V (ENDOV), transcript variant X29, mRNA
Length=1349
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 AGAACAACGCCCTG 17
||||||||||||||
Sbjct 482 AGAACAACGCCCTG 495
> gi|1034599316|ref|XM_017024509.1| PREDICTED: Homo sapiens endonuclease
V (ENDOV), transcript variant X12, mRNA
Length=2362
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 AGAACAACGCCCTG 17
||||||||||||||
Sbjct 1462 AGAACAACGCCCTG 1475
> gi|1034599318|ref|XM_011524664.2| PREDICTED: Homo sapiens endonuclease
V (ENDOV), transcript variant X13, mRNA
Length=2087
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 AGAACAACGCCCTG 17
||||||||||||||
Sbjct 1187 AGAACAACGCCCTG 1200
> gi|1034599314|ref|XM_017024508.1| PREDICTED: Homo sapiens endonuclease
V (ENDOV), transcript variant X11, mRNA
Length=2416
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 AGAACAACGCCCTG 17
||||||||||||||
Sbjct 1516 AGAACAACGCCCTG 1529
> gi|1034599327|ref|XM_017024512.1| PREDICTED: Homo sapiens endonuclease
V (ENDOV), transcript variant X22, mRNA
Length=2998
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 AGAACAACGCCCTG 17
||||||||||||||
Sbjct 697 AGAACAACGCCCTG 710
> gi|1034599344|ref|XM_017024520.1| PREDICTED: Homo sapiens endonuclease
V (ENDOV), transcript variant X37, mRNA
Length=2830
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 AGAACAACGCCCTG 17
||||||||||||||
Sbjct 653 AGAACAACGCCCTG 666
> gi|767994441|ref|XM_011524675.1| PREDICTED: Homo sapiens endonuclease
V (ENDOV), transcript variant X26, mRNA
Length=1211
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 AGAACAACGCCCTG 17
||||||||||||||
Sbjct 344 AGAACAACGCCCTG 357
> gi|257467549|ref|NM_001164638.1| Homo sapiens endonuclease V
(ENDOV), transcript variant 3, mRNA
Length=1288
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 AGAACAACGCCCTG 17
||||||||||||||
Sbjct 384 AGAACAACGCCCTG 397
> gi|767994408|ref|XM_011524660.1| PREDICTED: Homo sapiens endonuclease
V (ENDOV), transcript variant X5, mRNA
Length=1284
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 AGAACAACGCCCTG 17
||||||||||||||
Sbjct 384 AGAACAACGCCCTG 397
> gi|1034599338|ref|XM_017024517.1| PREDICTED: Homo sapiens endonuclease
V (ENDOV), transcript variant X34, mRNA
Length=2796
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 AGAACAACGCCCTG 17
||||||||||||||
Sbjct 344 AGAACAACGCCCTG 357
> gi|574957042|ref|NM_001164637.2| Homo sapiens endonuclease V
(ENDOV), transcript variant 2, mRNA
Length=2705
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 AGAACAACGCCCTG 17
||||||||||||||
Sbjct 384 AGAACAACGCCCTG 397
> gi|574957139|ref|NM_173627.4| Homo sapiens endonuclease V (ENDOV),
transcript variant 1, mRNA
Length=2840
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 AGAACAACGCCCTG 17
||||||||||||||
Sbjct 519 AGAACAACGCCCTG 532
> gi|1034599321|ref|XM_005257246.3| PREDICTED: Homo sapiens endonuclease
V (ENDOV), transcript variant X18, mRNA
Length=1070
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 AGAACAACGCCCTG 17
||||||||||||||
Sbjct 386 AGAACAACGCCCTG 399
> gi|1034599311|ref|XM_011524661.2| PREDICTED: Homo sapiens endonuclease
V (ENDOV), transcript variant X6, mRNA
Length=1253
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 AGAACAACGCCCTG 17
||||||||||||||
Sbjct 386 AGAACAACGCCCTG 399
> gi|1034599325|ref|XM_017024511.1| PREDICTED: Homo sapiens endonuclease
V (ENDOV), transcript variant X21, mRNA
Length=2563
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 AGAACAACGCCCTG 17
||||||||||||||
Sbjct 386 AGAACAACGCCCTG 399
> gi|1034599323|ref|XM_017024510.1| PREDICTED: Homo sapiens endonuclease
V (ENDOV), transcript variant X20, mRNA
Length=970
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 AGAACAACGCCCTG 17
||||||||||||||
Sbjct 569 AGAACAACGCCCTG 582
> gi|1034599313|ref|XM_005257244.3| PREDICTED: Homo sapiens endonuclease
V (ENDOV), transcript variant X10, mRNA
Length=1247
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 AGAACAACGCCCTG 17
||||||||||||||
Sbjct 569 AGAACAACGCCCTG 582
> gi|1034599312|ref|XM_006721837.3| PREDICTED: Homo sapiens endonuclease
V (ENDOV), transcript variant X9, mRNA
Length=1253
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 AGAACAACGCCCTG 17
||||||||||||||
Sbjct 569 AGAACAACGCCCTG 582
> gi|767994402|ref|XM_011524657.1| PREDICTED: Homo sapiens endonuclease
V (ENDOV), transcript variant X3, mRNA
Length=1436
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 AGAACAACGCCCTG 17
||||||||||||||
Sbjct 569 AGAACAACGCCCTG 582
> gi|767994414|ref|XM_011524663.1| PREDICTED: Homo sapiens endonuclease
V (ENDOV), transcript variant X8, mRNA
Length=1280
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 AGAACAACGCCCTG 17
||||||||||||||
Sbjct 569 AGAACAACGCCCTG 582
> gi|767994412|ref|XM_011524662.1| PREDICTED: Homo sapiens endonuclease
V (ENDOV), transcript variant X7, mRNA
Length=1286
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 AGAACAACGCCCTG 17
||||||||||||||
Sbjct 569 AGAACAACGCCCTG 582
> gi|767994400|ref|XM_011524656.1| PREDICTED: Homo sapiens endonuclease
V (ENDOV), transcript variant X2, mRNA
Length=1463
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 AGAACAACGCCCTG 17
||||||||||||||
Sbjct 569 AGAACAACGCCCTG 582
> gi|767994398|ref|XM_011524655.1| PREDICTED: Homo sapiens endonuclease
V (ENDOV), transcript variant X1, mRNA
Length=1469
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 AGAACAACGCCCTG 17
||||||||||||||
Sbjct 569 AGAACAACGCCCTG 582
> gi|1034599322|ref|XM_011524671.2| PREDICTED: Homo sapiens endonuclease
V (ENDOV), transcript variant X19, mRNA
Length=2746
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 AGAACAACGCCCTG 17
||||||||||||||
Sbjct 569 AGAACAACGCCCTG 582
> gi|767994430|ref|XM_011524670.1| PREDICTED: Homo sapiens endonuclease
V (ENDOV), transcript variant X17, mRNA
Length=2779
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 AGAACAACGCCCTG 17
||||||||||||||
Sbjct 569 AGAACAACGCCCTG 582
> gi|1034599320|ref|XM_011524669.2| PREDICTED: Homo sapiens endonuclease
V (ENDOV), transcript variant X16, mRNA
Length=2903
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 AGAACAACGCCCTG 17
||||||||||||||
Sbjct 569 AGAACAACGCCCTG 582
> gi|1034599310|ref|XM_011524658.2| PREDICTED: Homo sapiens endonuclease
V (ENDOV), transcript variant X4, mRNA
Length=3086
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 AGAACAACGCCCTG 17
||||||||||||||
Sbjct 569 AGAACAACGCCCTG 582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 2337180340
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2