BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= CTTGGATTTGATGTCGTCTTTCTCGAGAAAGACGACATCAAATCCAAGTTTTT (evalue = 10)
Length=53
Score E
Sequences producing significant alignments: (Bits) Value
gi|1034664466|ref|XM_011518395.2| PREDICTED: Homo sapiens prost... 44.1 0.001
gi|1034664462|ref|XR_001746250.1| PREDICTED: Homo sapiens prost... 44.1 0.001
gi|1034664464|ref|XM_017014485.1| PREDICTED: Homo sapiens prost... 44.1 0.001
gi|1034664461|ref|XR_929738.2| PREDICTED: Homo sapiens prostagl... 44.1 0.001
gi|1034664463|ref|XM_011518394.2| PREDICTED: Homo sapiens prost... 44.1 0.001
gi|226059132|ref|NM_012212.3| Homo sapiens prostaglandin reduct... 44.1 0.001
gi|226059158|ref|NM_001146108.1| Homo sapiens prostaglandin red... 44.1 0.001
gi|226056129|ref|NM_001146109.1| Homo sapiens prostaglandin red... 44.1 0.001
gi|1034590723|ref|XM_011521608.2| PREDICTED: Homo sapiens myosi... 34.2 1.1
gi|1034590731|ref|XM_011521611.2| PREDICTED: Homo sapiens myosi... 34.2 1.1
gi|1034590733|ref|XM_011521612.2| PREDICTED: Homo sapiens myosi... 34.2 1.1
gi|1034590727|ref|XM_011521610.2| PREDICTED: Homo sapiens myosi... 34.2 1.1
gi|215982790|ref|NM_000259.3| Homo sapiens myosin VA (MYO5A), t... 34.2 1.1
gi|215982793|ref|NM_001142495.1| Homo sapiens myosin VA (MYO5A)... 34.2 1.1
> gi|1034664466|ref|XM_011518395.2| PREDICTED: Homo sapiens prostaglandin
reductase 1 (PTGR1), transcript variant X5, mRNA
Length=1078
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%), Gaps = 0/26 (0%)
Strand=Plus/Minus
Query 28 AAAGACGACATCAAATCCAAGTTTTT 53
||||||||||||||||||||| ||||
Sbjct 512 AAAGACGACATCAAATCCAAGCTTTT 487
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CTTGGATTTGATGTCGTCTTT 21
|||||||||||||||||||||
Sbjct 492 CTTGGATTTGATGTCGTCTTT 512
> gi|1034664462|ref|XR_001746250.1| PREDICTED: Homo sapiens prostaglandin
reductase 1 (PTGR1), transcript variant X2, misc_RNA
Length=1333
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%), Gaps = 0/26 (0%)
Strand=Plus/Minus
Query 28 AAAGACGACATCAAATCCAAGTTTTT 53
||||||||||||||||||||| ||||
Sbjct 661 AAAGACGACATCAAATCCAAGCTTTT 636
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CTTGGATTTGATGTCGTCTTT 21
|||||||||||||||||||||
Sbjct 641 CTTGGATTTGATGTCGTCTTT 661
> gi|1034664464|ref|XM_017014485.1| PREDICTED: Homo sapiens prostaglandin
reductase 1 (PTGR1), transcript variant X4, mRNA
Length=1108
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%), Gaps = 0/26 (0%)
Strand=Plus/Minus
Query 28 AAAGACGACATCAAATCCAAGTTTTT 53
||||||||||||||||||||| ||||
Sbjct 661 AAAGACGACATCAAATCCAAGCTTTT 636
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CTTGGATTTGATGTCGTCTTT 21
|||||||||||||||||||||
Sbjct 641 CTTGGATTTGATGTCGTCTTT 661
> gi|1034664461|ref|XR_929738.2| PREDICTED: Homo sapiens prostaglandin
reductase 1 (PTGR1), transcript variant X1, misc_RNA
Length=1508
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%), Gaps = 0/26 (0%)
Strand=Plus/Minus
Query 28 AAAGACGACATCAAATCCAAGTTTTT 53
||||||||||||||||||||| ||||
Sbjct 836 AAAGACGACATCAAATCCAAGCTTTT 811
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CTTGGATTTGATGTCGTCTTT 21
|||||||||||||||||||||
Sbjct 816 CTTGGATTTGATGTCGTCTTT 836
> gi|1034664463|ref|XM_011518394.2| PREDICTED: Homo sapiens prostaglandin
reductase 1 (PTGR1), transcript variant X3, mRNA
Length=1283
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%), Gaps = 0/26 (0%)
Strand=Plus/Minus
Query 28 AAAGACGACATCAAATCCAAGTTTTT 53
||||||||||||||||||||| ||||
Sbjct 836 AAAGACGACATCAAATCCAAGCTTTT 811
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CTTGGATTTGATGTCGTCTTT 21
|||||||||||||||||||||
Sbjct 816 CTTGGATTTGATGTCGTCTTT 836
> gi|226059132|ref|NM_012212.3| Homo sapiens prostaglandin reductase
1 (PTGR1), transcript variant 2, mRNA
Length=1249
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%), Gaps = 0/26 (0%)
Strand=Plus/Minus
Query 28 AAAGACGACATCAAATCCAAGTTTTT 53
||||||||||||||||||||| ||||
Sbjct 676 AAAGACGACATCAAATCCAAGCTTTT 651
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CTTGGATTTGATGTCGTCTTT 21
|||||||||||||||||||||
Sbjct 656 CTTGGATTTGATGTCGTCTTT 676
> gi|226059158|ref|NM_001146108.1| Homo sapiens prostaglandin reductase
1 (PTGR1), transcript variant 1, mRNA
Length=1409
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%), Gaps = 0/26 (0%)
Strand=Plus/Minus
Query 28 AAAGACGACATCAAATCCAAGTTTTT 53
||||||||||||||||||||| ||||
Sbjct 836 AAAGACGACATCAAATCCAAGCTTTT 811
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CTTGGATTTGATGTCGTCTTT 21
|||||||||||||||||||||
Sbjct 816 CTTGGATTTGATGTCGTCTTT 836
> gi|226056129|ref|NM_001146109.1| Homo sapiens prostaglandin reductase
1 (PTGR1), transcript variant 3, mRNA
Length=1220
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%), Gaps = 0/26 (0%)
Strand=Plus/Minus
Query 28 AAAGACGACATCAAATCCAAGTTTTT 53
||||||||||||||||||||| ||||
Sbjct 836 AAAGACGACATCAAATCCAAGCTTTT 811
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CTTGGATTTGATGTCGTCTTT 21
|||||||||||||||||||||
Sbjct 816 CTTGGATTTGATGTCGTCTTT 836
> gi|1034590723|ref|XM_011521608.2| PREDICTED: Homo sapiens myosin
VA (MYO5A), transcript variant X4, mRNA
Length=9607
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 36 CATCAAATCCAAGTTTT 52
|||||||||||||||||
Sbjct 4326 CATCAAATCCAAGTTTT 4310
> gi|1034590731|ref|XM_011521611.2| PREDICTED: Homo sapiens myosin
VA (MYO5A), transcript variant X8, mRNA
Length=9526
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 36 CATCAAATCCAAGTTTT 52
|||||||||||||||||
Sbjct 4245 CATCAAATCCAAGTTTT 4229
> gi|1034590733|ref|XM_011521612.2| PREDICTED: Homo sapiens myosin
VA (MYO5A), transcript variant X9, mRNA
Length=9517
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 36 CATCAAATCCAAGTTTT 52
|||||||||||||||||
Sbjct 4236 CATCAAATCCAAGTTTT 4220
> gi|1034590727|ref|XM_011521610.2| PREDICTED: Homo sapiens myosin
VA (MYO5A), transcript variant X6, mRNA
Length=9599
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 36 CATCAAATCCAAGTTTT 52
|||||||||||||||||
Sbjct 4318 CATCAAATCCAAGTTTT 4302
> gi|215982790|ref|NM_000259.3| Homo sapiens myosin VA (MYO5A),
transcript variant 1, mRNA
Length=12238
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 36 CATCAAATCCAAGTTTT 52
|||||||||||||||||
Sbjct 4492 CATCAAATCCAAGTTTT 4476
> gi|215982793|ref|NM_001142495.1| Homo sapiens myosin VA (MYO5A),
transcript variant 2, mRNA
Length=12157
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 36 CATCAAATCCAAGTTTT 52
|||||||||||||||||
Sbjct 4411 CATCAAATCCAAGTTTT 4395
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 21028271724
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2