BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= CTTGAAGCATCGTATCACAGCAG (evalue = 10)
Length=23
Score E
Sequences producing significant alignments: (Bits) Value
gi|578805675|ref|XM_006712984.1| PREDICTED: Homo sapiens cateni... 46.1 5e-05
gi|578805673|ref|XM_006712983.1| PREDICTED: Homo sapiens cateni... 46.1 5e-05
gi|1034631301|ref|XM_017005738.1| PREDICTED: Homo sapiens caten... 46.1 5e-05
gi|578805672|ref|XM_005264886.2| PREDICTED: Homo sapiens cateni... 46.1 5e-05
gi|578805677|ref|XM_006712985.1| PREDICTED: Homo sapiens cateni... 46.1 5e-05
gi|148227671|ref|NM_001098210.1| Homo sapiens catenin beta 1 (C... 46.1 5e-05
gi|148233337|ref|NM_001098209.1| Homo sapiens catenin beta 1 (C... 46.1 5e-05
gi|148228165|ref|NM_001904.3| Homo sapiens catenin beta 1 (CTNN... 46.1 5e-05
> gi|578805675|ref|XM_006712984.1| PREDICTED: Homo sapiens catenin
beta 1 (CTNNB1), transcript variant X4, mRNA
Length=3324
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 CTTGAAGCATCGTATCACAGCAG 23
|||||||||||||||||||||||
Sbjct 3272 CTTGAAGCATCGTATCACAGCAG 3250
> gi|578805673|ref|XM_006712983.1| PREDICTED: Homo sapiens catenin
beta 1 (CTNNB1), transcript variant X3, mRNA
Length=3629
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 CTTGAAGCATCGTATCACAGCAG 23
|||||||||||||||||||||||
Sbjct 3577 CTTGAAGCATCGTATCACAGCAG 3555
> gi|1034631301|ref|XM_017005738.1| PREDICTED: Homo sapiens catenin
beta 1 (CTNNB1), transcript variant X2, mRNA
Length=3267
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 CTTGAAGCATCGTATCACAGCAG 23
|||||||||||||||||||||||
Sbjct 3215 CTTGAAGCATCGTATCACAGCAG 3193
> gi|578805672|ref|XM_005264886.2| PREDICTED: Homo sapiens catenin
beta 1 (CTNNB1), transcript variant X1, mRNA
Length=3731
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 CTTGAAGCATCGTATCACAGCAG 23
|||||||||||||||||||||||
Sbjct 3679 CTTGAAGCATCGTATCACAGCAG 3657
> gi|578805677|ref|XM_006712985.1| PREDICTED: Homo sapiens catenin
beta 1 (CTNNB1), transcript variant X5, mRNA
Length=3104
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 CTTGAAGCATCGTATCACAGCAG 23
|||||||||||||||||||||||
Sbjct 3052 CTTGAAGCATCGTATCACAGCAG 3030
> gi|148227671|ref|NM_001098210.1| Homo sapiens catenin beta 1
(CTNNB1), transcript variant 3, mRNA
Length=3256
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 CTTGAAGCATCGTATCACAGCAG 23
|||||||||||||||||||||||
Sbjct 3201 CTTGAAGCATCGTATCACAGCAG 3179
> gi|148233337|ref|NM_001098209.1| Homo sapiens catenin beta 1
(CTNNB1), transcript variant 2, mRNA
Length=3415
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 CTTGAAGCATCGTATCACAGCAG 23
|||||||||||||||||||||||
Sbjct 3360 CTTGAAGCATCGTATCACAGCAG 3338
> gi|148228165|ref|NM_001904.3| Homo sapiens catenin beta 1 (CTNNB1),
transcript variant 1, mRNA
Length=3720
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 1 CTTGAAGCATCGTATCACAGCAG 23
|||||||||||||||||||||||
Sbjct 3665 CTTGAAGCATCGTATCACAGCAG 3643
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 4090065595
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2