BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= CTTCGATGAGGAGGACACAAAGGTACCTTTGTGTCCTCCTCATCGAAG (evalue = 10)
Length=48
Score E
Sequences producing significant alignments: (Bits) Value
gi|767967525|ref|XM_011544773.1| PREDICTED: Homo sapiens G prot... 42.1 0.004
gi|148539875|ref|NM_001619.3| Homo sapiens adrenergic, beta, re... 42.1 0.004
gi|1034572124|ref|XR_001747779.1| PREDICTED: Homo sapiens G pro... 42.1 0.004
gi|1034681183|ref|XR_001731684.1| PREDICTED: Homo sapiens uncha... 32.2 3.6
gi|1034675250|ref|XM_017029836.1| PREDICTED: Homo sapiens calci... 32.2 3.6
gi|531990803|ref|NM_001256790.2| Homo sapiens calcium voltage-g... 32.2 3.6
gi|531990801|ref|NM_005183.3| Homo sapiens calcium voltage-gate... 32.2 3.6
gi|531990802|ref|NM_001256789.2| Homo sapiens calcium voltage-g... 32.2 3.6
gi|1034675252|ref|XM_011543983.2| PREDICTED: Homo sapiens calci... 32.2 3.6
gi|1034576680|ref|XR_001748135.1| PREDICTED: Homo sapiens uncha... 32.2 3.6
gi|1034558716|ref|XM_006711770.2| PREDICTED: Homo sapiens 5-met... 32.2 3.6
gi|1034558713|ref|XM_005273141.4| PREDICTED: Homo sapiens 5-met... 32.2 3.6
gi|633257782|ref|NM_001291940.1| Homo sapiens 5-methyltetrahydr... 32.2 3.6
gi|633257780|ref|NM_001291939.1| Homo sapiens 5-methyltetrahydr... 32.2 3.6
gi|169790922|ref|NM_000254.2| Homo sapiens 5-methyltetrahydrofo... 32.2 3.6
gi|1034558711|ref|XM_017001329.1| PREDICTED: Homo sapiens 5-met... 32.2 3.6
gi|1034558714|ref|XM_017001330.1| PREDICTED: Homo sapiens 5-met... 32.2 3.6
gi|1034558710|ref|XM_011544194.2| PREDICTED: Homo sapiens 5-met... 32.2 3.6
gi|282395054|ref|NR_033184.1| Homo sapiens zinc finger protein ... 32.2 3.6
gi|282395052|ref|NM_178549.3| Homo sapiens zinc finger protein ... 32.2 3.6
> gi|767967525|ref|XM_011544773.1| PREDICTED: Homo sapiens G protein-coupled
receptor kinase 2 (GRK2), transcript variant X1,
mRNA
Length=3183
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CTTCGATGAGGAGGACACAAA 21
|||||||||||||||||||||
Sbjct 1468 CTTCGATGAGGAGGACACAAA 1488
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TTTGTGTCCTCCTCATCGAAG 48
|||||||||||||||||||||
Sbjct 1488 TTTGTGTCCTCCTCATCGAAG 1468
> gi|148539875|ref|NM_001619.3| Homo sapiens adrenergic, beta,
receptor kinase 1 (ADRBK1), mRNA
Length=3478
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CTTCGATGAGGAGGACACAAA 21
|||||||||||||||||||||
Sbjct 1727 CTTCGATGAGGAGGACACAAA 1747
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TTTGTGTCCTCCTCATCGAAG 48
|||||||||||||||||||||
Sbjct 1747 TTTGTGTCCTCCTCATCGAAG 1727
> gi|1034572124|ref|XR_001747779.1| PREDICTED: Homo sapiens G protein-coupled
receptor kinase 2 (GRK2), transcript variant
X2, misc_RNA
Length=3389
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CTTCGATGAGGAGGACACAAA 21
|||||||||||||||||||||
Sbjct 1674 CTTCGATGAGGAGGACACAAA 1694
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TTTGTGTCCTCCTCATCGAAG 48
|||||||||||||||||||||
Sbjct 1694 TTTGTGTCCTCCTCATCGAAG 1674
> gi|1034681183|ref|XR_001731684.1| PREDICTED: Homo sapiens uncharacterized
LOC107984312 (LOC107984312), ncRNA
Length=6174
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 26 CCTTTGTGTCCTCCTC 41
||||||||||||||||
Sbjct 2133 CCTTTGTGTCCTCCTC 2148
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 8 GAGGAGGACACAAAGG 23
||||||||||||||||
Sbjct 2148 GAGGAGGACACAAAGG 2133
> gi|1034675250|ref|XM_017029836.1| PREDICTED: Homo sapiens calcium
voltage-gated channel subunit alpha1 F (CACNA1F), transcript
variant X1, mRNA
Length=3243
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 1 CTTCGATGAGGAGGAC 16
||||||||||||||||
Sbjct 3118 CTTCGATGAGGAGGAC 3133
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 33 GTCCTCCTCATCGAAG 48
||||||||||||||||
Sbjct 3133 GTCCTCCTCATCGAAG 3118
> gi|531990803|ref|NM_001256790.2| Homo sapiens calcium voltage-gated
channel subunit alpha1 F (CACNA1F), transcript variant
3, mRNA
Length=5875
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 1 CTTCGATGAGGAGGAC 16
||||||||||||||||
Sbjct 5750 CTTCGATGAGGAGGAC 5765
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 33 GTCCTCCTCATCGAAG 48
||||||||||||||||
Sbjct 5765 GTCCTCCTCATCGAAG 5750
> gi|531990801|ref|NM_005183.3| Homo sapiens calcium voltage-gated
channel subunit alpha1 F (CACNA1F), transcript variant 1,
mRNA
Length=6070
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 1 CTTCGATGAGGAGGAC 16
||||||||||||||||
Sbjct 5945 CTTCGATGAGGAGGAC 5960
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 33 GTCCTCCTCATCGAAG 48
||||||||||||||||
Sbjct 5960 GTCCTCCTCATCGAAG 5945
> gi|531990802|ref|NM_001256789.2| Homo sapiens calcium voltage-gated
channel subunit alpha1 F (CACNA1F), transcript variant
2, mRNA
Length=6037
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 1 CTTCGATGAGGAGGAC 16
||||||||||||||||
Sbjct 5912 CTTCGATGAGGAGGAC 5927
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 33 GTCCTCCTCATCGAAG 48
||||||||||||||||
Sbjct 5927 GTCCTCCTCATCGAAG 5912
> gi|1034675252|ref|XM_011543983.2| PREDICTED: Homo sapiens calcium
voltage-gated channel subunit alpha1 F (CACNA1F), transcript
variant X2, mRNA
Length=5887
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 1 CTTCGATGAGGAGGAC 16
||||||||||||||||
Sbjct 5762 CTTCGATGAGGAGGAC 5777
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 33 GTCCTCCTCATCGAAG 48
||||||||||||||||
Sbjct 5777 GTCCTCCTCATCGAAG 5762
> gi|1034576680|ref|XR_001748135.1| PREDICTED: Homo sapiens uncharacterized
LOC107984312 (LOC107984312), ncRNA
Length=6174
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 26 CCTTTGTGTCCTCCTC 41
||||||||||||||||
Sbjct 2133 CCTTTGTGTCCTCCTC 2148
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 8 GAGGAGGACACAAAGG 23
||||||||||||||||
Sbjct 2148 GAGGAGGACACAAAGG 2133
> gi|1034558716|ref|XM_006711770.2| PREDICTED: Homo sapiens 5-methyltetrahydrofolate-homocysteine
methyltransferase (MTR),
transcript variant X5, mRNA
Length=9465
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 18 CAAAGGTACCTTTGTG 33
||||||||||||||||
Sbjct 696 CAAAGGTACCTTTGTG 711
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 16 CACAAAGGTACCTTTG 31
||||||||||||||||
Sbjct 711 CACAAAGGTACCTTTG 696
> gi|1034558713|ref|XM_005273141.4| PREDICTED: Homo sapiens 5-methyltetrahydrofolate-homocysteine
methyltransferase (MTR),
transcript variant X3, mRNA
Length=10486
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 18 CAAAGGTACCTTTGTG 33
||||||||||||||||
Sbjct 1717 CAAAGGTACCTTTGTG 1732
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 16 CACAAAGGTACCTTTG 31
||||||||||||||||
Sbjct 1732 CACAAAGGTACCTTTG 1717
> gi|633257782|ref|NM_001291940.1| Homo sapiens 5-methyltetrahydrofolate-homocysteine
methyltransferase (MTR), transcript variant
3, mRNA
Length=10462
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 18 CAAAGGTACCTTTGTG 33
||||||||||||||||
Sbjct 1635 CAAAGGTACCTTTGTG 1650
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 16 CACAAAGGTACCTTTG 31
||||||||||||||||
Sbjct 1650 CACAAAGGTACCTTTG 1635
> gi|633257780|ref|NM_001291939.1| Homo sapiens 5-methyltetrahydrofolate-homocysteine
methyltransferase (MTR), transcript variant
2, mRNA
Length=10422
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 18 CAAAGGTACCTTTGTG 33
||||||||||||||||
Sbjct 1748 CAAAGGTACCTTTGTG 1763
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 16 CACAAAGGTACCTTTG 31
||||||||||||||||
Sbjct 1763 CACAAAGGTACCTTTG 1748
> gi|169790922|ref|NM_000254.2| Homo sapiens 5-methyltetrahydrofolate-homocysteine
methyltransferase (MTR), transcript variant
1, mRNA
Length=10558
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 18 CAAAGGTACCTTTGTG 33
||||||||||||||||
Sbjct 1748 CAAAGGTACCTTTGTG 1763
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 16 CACAAAGGTACCTTTG 31
||||||||||||||||
Sbjct 1763 CACAAAGGTACCTTTG 1748
> gi|1034558711|ref|XM_017001329.1| PREDICTED: Homo sapiens 5-methyltetrahydrofolate-homocysteine
methyltransferase (MTR),
transcript variant X2, mRNA
Length=11126
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 18 CAAAGGTACCTTTGTG 33
||||||||||||||||
Sbjct 2510 CAAAGGTACCTTTGTG 2525
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 16 CACAAAGGTACCTTTG 31
||||||||||||||||
Sbjct 2525 CACAAAGGTACCTTTG 2510
> gi|1034558714|ref|XM_017001330.1| PREDICTED: Homo sapiens 5-methyltetrahydrofolate-homocysteine
methyltransferase (MTR),
transcript variant X4, mRNA
Length=11090
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 18 CAAAGGTACCTTTGTG 33
||||||||||||||||
Sbjct 2510 CAAAGGTACCTTTGTG 2525
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 16 CACAAAGGTACCTTTG 31
||||||||||||||||
Sbjct 2525 CACAAAGGTACCTTTG 2510
> gi|1034558710|ref|XM_011544194.2| PREDICTED: Homo sapiens 5-methyltetrahydrofolate-homocysteine
methyltransferase (MTR),
transcript variant X1, mRNA
Length=11279
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 18 CAAAGGTACCTTTGTG 33
||||||||||||||||
Sbjct 2510 CAAAGGTACCTTTGTG 2525
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 16 CACAAAGGTACCTTTG 31
||||||||||||||||
Sbjct 2525 CACAAAGGTACCTTTG 2510
> gi|282395054|ref|NR_033184.1| Homo sapiens zinc finger protein
678 (ZNF678), transcript variant 2, non-coding RNA
Length=8593
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 8 GAGGAGGACACAAAGG 23
||||||||||||||||
Sbjct 7138 GAGGAGGACACAAAGG 7153
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 26 CCTTTGTGTCCTCCTC 41
||||||||||||||||
Sbjct 7153 CCTTTGTGTCCTCCTC 7138
> gi|282395052|ref|NM_178549.3| Homo sapiens zinc finger protein
678 (ZNF678), transcript variant 1, mRNA
Length=8565
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 8 GAGGAGGACACAAAGG 23
||||||||||||||||
Sbjct 7110 GAGGAGGACACAAAGG 7125
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 26 CCTTTGTGTCCTCCTC 41
||||||||||||||||
Sbjct 7125 CCTTTGTGTCCTCCTC 7110
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 18107678429
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2