BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= CTGTGTAAGAAACATGCTCATCTCGAGATGAGCATGTTTCTTACACAGTTTTT (evalue = 10)
Length=53
Score E
Sequences producing significant alignments: (Bits) Value
gi|1034638142|ref|XM_005262696.4| PREDICTED: Homo sapiens PDZ a... 42.1 0.004
gi|1034638148|ref|XM_017007658.1| PREDICTED: Homo sapiens PDZ a... 42.1 0.004
gi|1034638141|ref|XM_006714068.3| PREDICTED: Homo sapiens PDZ a... 42.1 0.004
gi|1034638150|ref|XM_005262698.4| PREDICTED: Homo sapiens PDZ a... 42.1 0.004
gi|1034638147|ref|XM_011531543.2| PREDICTED: Homo sapiens PDZ a... 42.1 0.004
gi|1034638140|ref|XM_005262695.4| PREDICTED: Homo sapiens PDZ a... 42.1 0.004
gi|1034638145|ref|XM_017007657.1| PREDICTED: Homo sapiens PDZ a... 42.1 0.004
gi|1034638139|ref|XM_005262693.4| PREDICTED: Homo sapiens PDZ a... 42.1 0.004
gi|1034638143|ref|XM_006714069.3| PREDICTED: Homo sapiens PDZ a... 42.1 0.004
gi|1034638138|ref|XM_006714066.3| PREDICTED: Homo sapiens PDZ a... 42.1 0.004
gi|1034638144|ref|XM_006714070.3| PREDICTED: Homo sapiens PDZ a... 42.1 0.004
gi|374093211|ref|NM_001256428.1| Homo sapiens PDZ and LIM domai... 42.1 0.004
gi|374093202|ref|NM_001256425.1| Homo sapiens PDZ and LIM domai... 42.1 0.004
gi|374093200|ref|NM_001011513.3| Homo sapiens PDZ and LIM domai... 42.1 0.004
gi|374093207|ref|NM_001256426.1| Homo sapiens PDZ and LIM domai... 42.1 0.004
gi|374092019|ref|NM_006457.4| Homo sapiens PDZ and LIM domain 5... 42.1 0.004
gi|327365347|ref|NM_004863.3| Homo sapiens serine palmitoyltran... 32.2 4.2
gi|156546887|ref|NM_016298.3| Homo sapiens F-box protein 40 (FB... 32.2 4.2
> gi|1034638142|ref|XM_005262696.4| PREDICTED: Homo sapiens PDZ
and LIM domain 5 (PDLIM5), transcript variant X5, mRNA
Length=6112
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CTGTGTAAGAAACATGCTCAT 21
|||||||||||||||||||||
Sbjct 1921 CTGTGTAAGAAACATGCTCAT 1941
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 ATGAGCATGTTTCTTACACAG 48
|||||||||||||||||||||
Sbjct 1941 ATGAGCATGTTTCTTACACAG 1921
> gi|1034638148|ref|XM_017007658.1| PREDICTED: Homo sapiens PDZ
and LIM domain 5 (PDLIM5), transcript variant X10, mRNA
Length=5749
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CTGTGTAAGAAACATGCTCAT 21
|||||||||||||||||||||
Sbjct 1558 CTGTGTAAGAAACATGCTCAT 1578
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 ATGAGCATGTTTCTTACACAG 48
|||||||||||||||||||||
Sbjct 1578 ATGAGCATGTTTCTTACACAG 1558
> gi|1034638141|ref|XM_006714068.3| PREDICTED: Homo sapiens PDZ
and LIM domain 5 (PDLIM5), transcript variant X4, mRNA
Length=6145
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CTGTGTAAGAAACATGCTCAT 21
|||||||||||||||||||||
Sbjct 1954 CTGTGTAAGAAACATGCTCAT 1974
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 ATGAGCATGTTTCTTACACAG 48
|||||||||||||||||||||
Sbjct 1974 ATGAGCATGTTTCTTACACAG 1954
> gi|1034638150|ref|XM_005262698.4| PREDICTED: Homo sapiens PDZ
and LIM domain 5 (PDLIM5), transcript variant X11, mRNA
Length=5741
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CTGTGTAAGAAACATGCTCAT 21
|||||||||||||||||||||
Sbjct 1550 CTGTGTAAGAAACATGCTCAT 1570
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 ATGAGCATGTTTCTTACACAG 48
|||||||||||||||||||||
Sbjct 1570 ATGAGCATGTTTCTTACACAG 1550
> gi|1034638147|ref|XM_011531543.2| PREDICTED: Homo sapiens PDZ
and LIM domain 5 (PDLIM5), transcript variant X9, mRNA
Length=6110
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CTGTGTAAGAAACATGCTCAT 21
|||||||||||||||||||||
Sbjct 1919 CTGTGTAAGAAACATGCTCAT 1939
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 ATGAGCATGTTTCTTACACAG 48
|||||||||||||||||||||
Sbjct 1939 ATGAGCATGTTTCTTACACAG 1919
> gi|1034638140|ref|XM_005262695.4| PREDICTED: Homo sapiens PDZ
and LIM domain 5 (PDLIM5), transcript variant X3, mRNA
Length=6494
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CTGTGTAAGAAACATGCTCAT 21
|||||||||||||||||||||
Sbjct 2303 CTGTGTAAGAAACATGCTCAT 2323
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 ATGAGCATGTTTCTTACACAG 48
|||||||||||||||||||||
Sbjct 2323 ATGAGCATGTTTCTTACACAG 2303
> gi|1034638145|ref|XM_017007657.1| PREDICTED: Homo sapiens PDZ
and LIM domain 5 (PDLIM5), transcript variant X8, mRNA
Length=6116
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CTGTGTAAGAAACATGCTCAT 21
|||||||||||||||||||||
Sbjct 1925 CTGTGTAAGAAACATGCTCAT 1945
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 ATGAGCATGTTTCTTACACAG 48
|||||||||||||||||||||
Sbjct 1945 ATGAGCATGTTTCTTACACAG 1925
> gi|1034638139|ref|XM_005262693.4| PREDICTED: Homo sapiens PDZ
and LIM domain 5 (PDLIM5), transcript variant X2, mRNA
Length=6512
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CTGTGTAAGAAACATGCTCAT 21
|||||||||||||||||||||
Sbjct 2321 CTGTGTAAGAAACATGCTCAT 2341
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 ATGAGCATGTTTCTTACACAG 48
|||||||||||||||||||||
Sbjct 2341 ATGAGCATGTTTCTTACACAG 2321
> gi|1034638143|ref|XM_006714069.3| PREDICTED: Homo sapiens PDZ
and LIM domain 5 (PDLIM5), transcript variant X6, mRNA
Length=6131
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CTGTGTAAGAAACATGCTCAT 21
|||||||||||||||||||||
Sbjct 1940 CTGTGTAAGAAACATGCTCAT 1960
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 ATGAGCATGTTTCTTACACAG 48
|||||||||||||||||||||
Sbjct 1960 ATGAGCATGTTTCTTACACAG 1940
> gi|1034638138|ref|XM_006714066.3| PREDICTED: Homo sapiens PDZ
and LIM domain 5 (PDLIM5), transcript variant X1, mRNA
Length=6527
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CTGTGTAAGAAACATGCTCAT 21
|||||||||||||||||||||
Sbjct 2336 CTGTGTAAGAAACATGCTCAT 2356
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 ATGAGCATGTTTCTTACACAG 48
|||||||||||||||||||||
Sbjct 2356 ATGAGCATGTTTCTTACACAG 2336
> gi|1034638144|ref|XM_006714070.3| PREDICTED: Homo sapiens PDZ
and LIM domain 5 (PDLIM5), transcript variant X7, mRNA
Length=6128
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CTGTGTAAGAAACATGCTCAT 21
|||||||||||||||||||||
Sbjct 1937 CTGTGTAAGAAACATGCTCAT 1957
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 ATGAGCATGTTTCTTACACAG 48
|||||||||||||||||||||
Sbjct 1957 ATGAGCATGTTTCTTACACAG 1937
> gi|374093211|ref|NM_001256428.1| Homo sapiens PDZ and LIM domain
5 (PDLIM5), transcript variant 8, mRNA
Length=5980
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CTGTGTAAGAAACATGCTCAT 21
|||||||||||||||||||||
Sbjct 1785 CTGTGTAAGAAACATGCTCAT 1805
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 ATGAGCATGTTTCTTACACAG 48
|||||||||||||||||||||
Sbjct 1805 ATGAGCATGTTTCTTACACAG 1785
> gi|374093202|ref|NM_001256425.1| Homo sapiens PDZ and LIM domain
5 (PDLIM5), transcript variant 3, mRNA
Length=5713
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CTGTGTAAGAAACATGCTCAT 21
|||||||||||||||||||||
Sbjct 1518 CTGTGTAAGAAACATGCTCAT 1538
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 ATGAGCATGTTTCTTACACAG 48
|||||||||||||||||||||
Sbjct 1538 ATGAGCATGTTTCTTACACAG 1518
> gi|374093200|ref|NM_001011513.3| Homo sapiens PDZ and LIM domain
5 (PDLIM5), transcript variant 2, mRNA
Length=5805
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CTGTGTAAGAAACATGCTCAT 21
|||||||||||||||||||||
Sbjct 1610 CTGTGTAAGAAACATGCTCAT 1630
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 ATGAGCATGTTTCTTACACAG 48
|||||||||||||||||||||
Sbjct 1630 ATGAGCATGTTTCTTACACAG 1610
> gi|374093207|ref|NM_001256426.1| Homo sapiens PDZ and LIM domain
5 (PDLIM5), transcript variant 6, mRNA
Length=6219
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CTGTGTAAGAAACATGCTCAT 21
|||||||||||||||||||||
Sbjct 2024 CTGTGTAAGAAACATGCTCAT 2044
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 ATGAGCATGTTTCTTACACAG 48
|||||||||||||||||||||
Sbjct 2044 ATGAGCATGTTTCTTACACAG 2024
> gi|374092019|ref|NM_006457.4| Homo sapiens PDZ and LIM domain
5 (PDLIM5), transcript variant 1, mRNA
Length=6132
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CTGTGTAAGAAACATGCTCAT 21
|||||||||||||||||||||
Sbjct 1937 CTGTGTAAGAAACATGCTCAT 1957
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 ATGAGCATGTTTCTTACACAG 48
|||||||||||||||||||||
Sbjct 1957 ATGAGCATGTTTCTTACACAG 1937
> gi|327365347|ref|NM_004863.3| Homo sapiens serine palmitoyltransferase
long chain base subunit 2 (SPTLC2), mRNA
Length=8164
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 36 GTTTCTTACACAGTTT 51
||||||||||||||||
Sbjct 4558 GTTTCTTACACAGTTT 4573
> gi|156546887|ref|NM_016298.3| Homo sapiens F-box protein 40 (FBXO40),
mRNA
Length=5722
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 8 AGAAACATGCTCATCT 23
||||||||||||||||
Sbjct 4599 AGAAACATGCTCATCT 4614
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 26 AGATGAGCATGTTTCT 41
||||||||||||||||
Sbjct 4614 AGATGAGCATGTTTCT 4599
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 21028271724
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2