BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= CTCTACAAGAAGACTCAGGAACTCGAGTTCCTGAGTCTTCTTGTAGAGTTTTTT (evalue = 10)
Length=54
Score E
Sequences producing significant alignments: (Bits) Value
gi|1034625754|ref|XM_011529035.2| PREDICTED: Homo sapiens tumor... 42.1 0.005
gi|1034625751|ref|XM_011529034.2| PREDICTED: Homo sapiens tumor... 42.1 0.005
gi|345197261|ref|NM_001243891.1| Homo sapiens tumor protein D52... 42.1 0.005
gi|345198269|ref|NM_001243895.1| Homo sapiens tumor protein D52... 42.1 0.005
gi|345197255|ref|NM_003288.3| Homo sapiens tumor protein D52 li... 42.1 0.005
gi|345197253|ref|NM_199362.2| Homo sapiens tumor protein D52 li... 42.1 0.005
gi|345128623|ref|NM_199360.2| Homo sapiens tumor protein D52 li... 42.1 0.005
gi|1034625752|ref|XM_017028038.1| PREDICTED: Homo sapiens tumor... 38.2 0.070
gi|345197263|ref|NM_001243892.1| Homo sapiens tumor protein D52... 38.2 0.070
gi|345197259|ref|NM_199359.2| Homo sapiens tumor protein D52 li... 38.2 0.070
gi|345197256|ref|NM_199363.2| Homo sapiens tumor protein D52 li... 38.2 0.070
gi|345197254|ref|NM_199361.2| Homo sapiens tumor protein D52 li... 38.2 0.070
> gi|1034625754|ref|XM_011529035.2| PREDICTED: Homo sapiens tumor
protein D52 like 2 (TPD52L2), transcript variant X3, mRNA
Length=1108
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CTCTACAAGAAGACTCAGGAA 21
|||||||||||||||||||||
Sbjct 511 CTCTACAAGAAGACTCAGGAA 531
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TTCCTGAGTCTTCTTGTAGAG 48
|||||||||||||||||||||
Sbjct 531 TTCCTGAGTCTTCTTGTAGAG 511
> gi|1034625751|ref|XM_011529034.2| PREDICTED: Homo sapiens tumor
protein D52 like 2 (TPD52L2), transcript variant X1, mRNA
Length=1181
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CTCTACAAGAAGACTCAGGAA 21
|||||||||||||||||||||
Sbjct 511 CTCTACAAGAAGACTCAGGAA 531
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TTCCTGAGTCTTCTTGTAGAG 48
|||||||||||||||||||||
Sbjct 531 TTCCTGAGTCTTCTTGTAGAG 511
> gi|345197261|ref|NM_001243891.1| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 7, mRNA
Length=2284
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CTCTACAAGAAGACTCAGGAA 21
|||||||||||||||||||||
Sbjct 436 CTCTACAAGAAGACTCAGGAA 456
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TTCCTGAGTCTTCTTGTAGAG 48
|||||||||||||||||||||
Sbjct 456 TTCCTGAGTCTTCTTGTAGAG 436
> gi|345198269|ref|NM_001243895.1| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 10, mRNA
Length=2310
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CTCTACAAGAAGACTCAGGAA 21
|||||||||||||||||||||
Sbjct 511 CTCTACAAGAAGACTCAGGAA 531
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TTCCTGAGTCTTCTTGTAGAG 48
|||||||||||||||||||||
Sbjct 531 TTCCTGAGTCTTCTTGTAGAG 511
> gi|345197255|ref|NM_003288.3| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 5, mRNA
Length=2359
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CTCTACAAGAAGACTCAGGAA 21
|||||||||||||||||||||
Sbjct 511 CTCTACAAGAAGACTCAGGAA 531
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TTCCTGAGTCTTCTTGTAGAG 48
|||||||||||||||||||||
Sbjct 531 TTCCTGAGTCTTCTTGTAGAG 511
> gi|345197253|ref|NM_199362.2| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 3, mRNA
Length=2401
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CTCTACAAGAAGACTCAGGAA 21
|||||||||||||||||||||
Sbjct 511 CTCTACAAGAAGACTCAGGAA 531
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TTCCTGAGTCTTCTTGTAGAG 48
|||||||||||||||||||||
Sbjct 531 TTCCTGAGTCTTCTTGTAGAG 511
> gi|345128623|ref|NM_199360.2| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 1, mRNA
Length=2428
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CTCTACAAGAAGACTCAGGAA 21
|||||||||||||||||||||
Sbjct 511 CTCTACAAGAAGACTCAGGAA 531
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TTCCTGAGTCTTCTTGTAGAG 48
|||||||||||||||||||||
Sbjct 531 TTCCTGAGTCTTCTTGTAGAG 511
> gi|1034625752|ref|XM_017028038.1| PREDICTED: Homo sapiens tumor
protein D52 like 2 (TPD52L2), transcript variant X2, mRNA
Length=1110
Score = 38.2 bits (19), Expect = 0.070
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 3 CTACAAGAAGACTCAGGAA 21
|||||||||||||||||||
Sbjct 438 CTACAAGAAGACTCAGGAA 456
Score = 38.2 bits (19), Expect = 0.070
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 28 TTCCTGAGTCTTCTTGTAG 46
|||||||||||||||||||
Sbjct 456 TTCCTGAGTCTTCTTGTAG 438
> gi|345197263|ref|NM_001243892.1| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 8, mRNA
Length=2230
Score = 38.2 bits (19), Expect = 0.070
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 3 CTACAAGAAGACTCAGGAA 21
|||||||||||||||||||
Sbjct 384 CTACAAGAAGACTCAGGAA 402
Score = 38.2 bits (19), Expect = 0.070
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 28 TTCCTGAGTCTTCTTGTAG 46
|||||||||||||||||||
Sbjct 402 TTCCTGAGTCTTCTTGTAG 384
> gi|345197259|ref|NM_199359.2| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 6, mRNA
Length=2299
Score = 38.2 bits (19), Expect = 0.070
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 3 CTACAAGAAGACTCAGGAA 21
|||||||||||||||||||
Sbjct 453 CTACAAGAAGACTCAGGAA 471
Score = 38.2 bits (19), Expect = 0.070
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 28 TTCCTGAGTCTTCTTGTAG 46
|||||||||||||||||||
Sbjct 471 TTCCTGAGTCTTCTTGTAG 453
> gi|345197256|ref|NM_199363.2| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 4, mRNA
Length=2341
Score = 38.2 bits (19), Expect = 0.070
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 3 CTACAAGAAGACTCAGGAA 21
|||||||||||||||||||
Sbjct 453 CTACAAGAAGACTCAGGAA 471
Score = 38.2 bits (19), Expect = 0.070
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 28 TTCCTGAGTCTTCTTGTAG 46
|||||||||||||||||||
Sbjct 471 TTCCTGAGTCTTCTTGTAG 453
> gi|345197254|ref|NM_199361.2| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 2, mRNA
Length=2368
Score = 38.2 bits (19), Expect = 0.070
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 3 CTACAAGAAGACTCAGGAA 21
|||||||||||||||||||
Sbjct 453 CTACAAGAAGACTCAGGAA 471
Score = 38.2 bits (19), Expect = 0.070
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 28 TTCCTGAGTCTTCTTGTAG 46
|||||||||||||||||||
Sbjct 471 TTCCTGAGTCTTCTTGTAG 453
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 21612390383
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2