BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= CTCGGTGGAAGGACAAACTC (evalue = 10)
Length=20
Score E
Sequences producing significant alignments: (Bits) Value
gi|83367070|ref|NM_003753.3| Homo sapiens eukaryotic translatio... 40.1 0.002
gi|1034692267|ref|XR_001751259.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|1034676669|ref|XR_001756252.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|1034676670|ref|XR_951657.2| PREDICTED: Homo sapiens uncharac... 28.2 7.3
gi|1034568168|ref|XM_017016220.1| PREDICTED: Homo sapiens potas... 28.2 7.3
gi|208879409|ref|NM_004096.4| Homo sapiens eukaryotic translati... 28.2 7.3
gi|1034656162|ref|XM_017012388.1| PREDICTED: Homo sapiens WD re... 28.2 7.3
gi|1034656149|ref|XM_017012384.1| PREDICTED: Homo sapiens WD re... 28.2 7.3
gi|530387275|ref|XM_005249549.1| PREDICTED: Homo sapiens WD rep... 28.2 7.3
gi|1034656158|ref|XM_017012386.1| PREDICTED: Homo sapiens WD re... 28.2 7.3
gi|1034656156|ref|XM_017012385.1| PREDICTED: Homo sapiens WD re... 28.2 7.3
gi|1034656160|ref|XM_017012387.1| PREDICTED: Homo sapiens WD re... 28.2 7.3
gi|1034656142|ref|XM_017012381.1| PREDICTED: Homo sapiens WD re... 28.2 7.3
gi|1034656144|ref|XM_011516369.2| PREDICTED: Homo sapiens WD re... 28.2 7.3
gi|767948185|ref|XM_011516367.1| PREDICTED: Homo sapiens WD rep... 28.2 7.3
gi|155030241|ref|NM_018051.4| Homo sapiens WD repeat domain 60 ... 28.2 7.3
gi|1034656155|ref|XR_927486.2| PREDICTED: Homo sapiens WD repea... 28.2 7.3
gi|1034656145|ref|XM_017012382.1| PREDICTED: Homo sapiens WD re... 28.2 7.3
gi|1034656154|ref|XR_001744828.1| PREDICTED: Homo sapiens WD re... 28.2 7.3
gi|1034656153|ref|XR_001744827.1| PREDICTED: Homo sapiens WD re... 28.2 7.3
gi|1034656152|ref|XR_242045.2| PREDICTED: Homo sapiens WD repea... 28.2 7.3
gi|1034656151|ref|XR_428179.2| PREDICTED: Homo sapiens WD repea... 28.2 7.3
gi|1034656141|ref|XM_011516368.2| PREDICTED: Homo sapiens WD re... 28.2 7.3
gi|1034656136|ref|XM_006716041.2| PREDICTED: Homo sapiens WD re... 28.2 7.3
gi|1034656140|ref|XR_001744826.1| PREDICTED: Homo sapiens WD re... 28.2 7.3
gi|1034656139|ref|XR_001744825.1| PREDICTED: Homo sapiens WD re... 28.2 7.3
gi|1034656138|ref|XR_001744824.1| PREDICTED: Homo sapiens WD re... 28.2 7.3
gi|1034656137|ref|XR_001744823.1| PREDICTED: Homo sapiens WD re... 28.2 7.3
gi|1034656147|ref|XM_017012383.1| PREDICTED: Homo sapiens WD re... 28.2 7.3
> gi|83367070|ref|NM_003753.3| Homo sapiens eukaryotic translation
initiation factor 3 subunit D (EIF3D), mRNA
Length=1949
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 CTCGGTGGAAGGACAAACTC 20
||||||||||||||||||||
Sbjct 1850 CTCGGTGGAAGGACAAACTC 1831
> gi|1034692267|ref|XR_001751259.1| PREDICTED: Homo sapiens uncharacterized
LOC105374251 (LOC105374251), transcript variant
X3, ncRNA
Length=937
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GGTGGAAGGACAAA 17
||||||||||||||
Sbjct 380 GGTGGAAGGACAAA 393
> gi|1034676669|ref|XR_001756252.1| PREDICTED: Homo sapiens uncharacterized
LOC105374252 (LOC105374252), transcript variant
X1, ncRNA
Length=937
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GGTGGAAGGACAAA 17
||||||||||||||
Sbjct 380 GGTGGAAGGACAAA 393
> gi|1034676670|ref|XR_951657.2| PREDICTED: Homo sapiens uncharacterized
LOC105374252 (LOC105374252), transcript variant X2,
ncRNA
Length=492
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GGTGGAAGGACAAA 17
||||||||||||||
Sbjct 380 GGTGGAAGGACAAA 393
> gi|1034568168|ref|XM_017016220.1| PREDICTED: Homo sapiens potassium
calcium-activated channel subfamily M alpha 1 (KCNMA1),
transcript variant X32, mRNA
Length=10509
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 GTGGAAGGACAAAC 18
||||||||||||||
Sbjct 3331 GTGGAAGGACAAAC 3344
> gi|208879409|ref|NM_004096.4| Homo sapiens eukaryotic translation
initiation factor 4E binding protein 2 (EIF4EBP2), mRNA
Length=7531
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 GGTGGAAGGACAAA 17
||||||||||||||
Sbjct 3824 GGTGGAAGGACAAA 3811
> gi|1034656162|ref|XM_017012388.1| PREDICTED: Homo sapiens WD
repeat domain 60 (WDR60), transcript variant X22, mRNA
Length=2532
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 GTGGAAGGACAAAC 18
||||||||||||||
Sbjct 1312 GTGGAAGGACAAAC 1299
> gi|1034656149|ref|XM_017012384.1| PREDICTED: Homo sapiens WD
repeat domain 60 (WDR60), transcript variant X13, mRNA
Length=3355
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 GTGGAAGGACAAAC 18
||||||||||||||
Sbjct 2135 GTGGAAGGACAAAC 2122
> gi|530387275|ref|XM_005249549.1| PREDICTED: Homo sapiens WD repeat
domain 60 (WDR60), transcript variant X12, mRNA
Length=3364
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 GTGGAAGGACAAAC 18
||||||||||||||
Sbjct 2144 GTGGAAGGACAAAC 2131
> gi|1034656158|ref|XM_017012386.1| PREDICTED: Homo sapiens WD
repeat domain 60 (WDR60), transcript variant X20, mRNA
Length=3308
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 GTGGAAGGACAAAC 18
||||||||||||||
Sbjct 2088 GTGGAAGGACAAAC 2075
> gi|1034656156|ref|XM_017012385.1| PREDICTED: Homo sapiens WD
repeat domain 60 (WDR60), transcript variant X19, mRNA
Length=3529
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 GTGGAAGGACAAAC 18
||||||||||||||
Sbjct 2309 GTGGAAGGACAAAC 2296
> gi|1034656160|ref|XM_017012387.1| PREDICTED: Homo sapiens WD
repeat domain 60 (WDR60), transcript variant X21, mRNA
Length=3648
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 GTGGAAGGACAAAC 18
||||||||||||||
Sbjct 2428 GTGGAAGGACAAAC 2415
> gi|1034656142|ref|XM_017012381.1| PREDICTED: Homo sapiens WD
repeat domain 60 (WDR60), transcript variant X8, mRNA
Length=3818
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 GTGGAAGGACAAAC 18
||||||||||||||
Sbjct 2598 GTGGAAGGACAAAC 2585
> gi|1034656144|ref|XM_011516369.2| PREDICTED: Homo sapiens WD
repeat domain 60 (WDR60), transcript variant X9, mRNA
Length=3627
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 GTGGAAGGACAAAC 18
||||||||||||||
Sbjct 2407 GTGGAAGGACAAAC 2394
> gi|767948185|ref|XM_011516367.1| PREDICTED: Homo sapiens WD repeat
domain 60 (WDR60), transcript variant X3, mRNA
Length=3638
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 GTGGAAGGACAAAC 18
||||||||||||||
Sbjct 2418 GTGGAAGGACAAAC 2405
> gi|155030241|ref|NM_018051.4| Homo sapiens WD repeat domain 60
(WDR60), mRNA
Length=3789
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 GTGGAAGGACAAAC 18
||||||||||||||
Sbjct 2552 GTGGAAGGACAAAC 2539
> gi|1034656155|ref|XR_927486.2| PREDICTED: Homo sapiens WD repeat
domain 60 (WDR60), transcript variant X18, misc_RNA
Length=3611
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 GTGGAAGGACAAAC 18
||||||||||||||
Sbjct 2394 GTGGAAGGACAAAC 2381
> gi|1034656145|ref|XM_017012382.1| PREDICTED: Homo sapiens WD
repeat domain 60 (WDR60), transcript variant X10, mRNA
Length=3655
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 GTGGAAGGACAAAC 18
||||||||||||||
Sbjct 2567 GTGGAAGGACAAAC 2554
> gi|1034656154|ref|XR_001744828.1| PREDICTED: Homo sapiens WD
repeat domain 60 (WDR60), transcript variant X17, misc_RNA
Length=3623
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 GTGGAAGGACAAAC 18
||||||||||||||
Sbjct 2403 GTGGAAGGACAAAC 2390
> gi|1034656153|ref|XR_001744827.1| PREDICTED: Homo sapiens WD
repeat domain 60 (WDR60), transcript variant X16, misc_RNA
Length=3553
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 GTGGAAGGACAAAC 18
||||||||||||||
Sbjct 2565 GTGGAAGGACAAAC 2552
> gi|1034656152|ref|XR_242045.2| PREDICTED: Homo sapiens WD repeat
domain 60 (WDR60), transcript variant X15, misc_RNA
Length=3785
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 GTGGAAGGACAAAC 18
||||||||||||||
Sbjct 2565 GTGGAAGGACAAAC 2552
> gi|1034656151|ref|XR_428179.2| PREDICTED: Homo sapiens WD repeat
domain 60 (WDR60), transcript variant X14, misc_RNA
Length=3564
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 GTGGAAGGACAAAC 18
||||||||||||||
Sbjct 2576 GTGGAAGGACAAAC 2563
> gi|1034656141|ref|XM_011516368.2| PREDICTED: Homo sapiens WD
repeat domain 60 (WDR60), transcript variant X7, mRNA
Length=3664
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 GTGGAAGGACAAAC 18
||||||||||||||
Sbjct 2576 GTGGAAGGACAAAC 2563
> gi|1034656136|ref|XM_006716041.2| PREDICTED: Homo sapiens WD
repeat domain 60 (WDR60), transcript variant X1, mRNA
Length=3796
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 GTGGAAGGACAAAC 18
||||||||||||||
Sbjct 2576 GTGGAAGGACAAAC 2563
> gi|1034656140|ref|XR_001744826.1| PREDICTED: Homo sapiens WD
repeat domain 60 (WDR60), transcript variant X6, misc_RNA
Length=3995
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 GTGGAAGGACAAAC 18
||||||||||||||
Sbjct 2576 GTGGAAGGACAAAC 2563
> gi|1034656139|ref|XR_001744825.1| PREDICTED: Homo sapiens WD
repeat domain 60 (WDR60), transcript variant X5, misc_RNA
Length=5743
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 GTGGAAGGACAAAC 18
||||||||||||||
Sbjct 2576 GTGGAAGGACAAAC 2563
> gi|1034656138|ref|XR_001744824.1| PREDICTED: Homo sapiens WD
repeat domain 60 (WDR60), transcript variant X4, misc_RNA
Length=5389
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 GTGGAAGGACAAAC 18
||||||||||||||
Sbjct 2576 GTGGAAGGACAAAC 2563
> gi|1034656137|ref|XR_001744823.1| PREDICTED: Homo sapiens WD
repeat domain 60 (WDR60), transcript variant X2, misc_RNA
Length=5847
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 GTGGAAGGACAAAC 18
||||||||||||||
Sbjct 2576 GTGGAAGGACAAAC 2563
> gi|1034656147|ref|XM_017012383.1| PREDICTED: Homo sapiens WD
repeat domain 60 (WDR60), transcript variant X11, mRNA
Length=3848
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 GTGGAAGGACAAAC 18
||||||||||||||
Sbjct 2628 GTGGAAGGACAAAC 2615
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 2337180340
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2