BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= CTATCCTACTAATAGTGACTTCTCGAGAAGTCACTATTAGTAGGATAGTTTTT (evalue = 10)
Length=53
Score E
Sequences producing significant alignments: (Bits) Value
gi|1034664462|ref|XR_001746250.1| PREDICTED: Homo sapiens prost... 42.1 0.004
gi|1034664464|ref|XM_017014485.1| PREDICTED: Homo sapiens prost... 42.1 0.004
gi|1034664461|ref|XR_929738.2| PREDICTED: Homo sapiens prostagl... 42.1 0.004
gi|1034664463|ref|XM_011518394.2| PREDICTED: Homo sapiens prost... 42.1 0.004
gi|226059132|ref|NM_012212.3| Homo sapiens prostaglandin reduct... 42.1 0.004
gi|226059158|ref|NM_001146108.1| Homo sapiens prostaglandin red... 42.1 0.004
gi|226056129|ref|NM_001146109.1| Homo sapiens prostaglandin red... 42.1 0.004
> gi|1034664462|ref|XR_001746250.1| PREDICTED: Homo sapiens prostaglandin
reductase 1 (PTGR1), transcript variant X2, misc_RNA
Length=1333
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGTCACTATTAGTAGGATAG 48
|||||||||||||||||||||
Sbjct 153 AAGTCACTATTAGTAGGATAG 133
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CTATCCTACTAATAGTGACTT 21
|||||||||||||||||||||
Sbjct 133 CTATCCTACTAATAGTGACTT 153
> gi|1034664464|ref|XM_017014485.1| PREDICTED: Homo sapiens prostaglandin
reductase 1 (PTGR1), transcript variant X4, mRNA
Length=1108
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGTCACTATTAGTAGGATAG 48
|||||||||||||||||||||
Sbjct 153 AAGTCACTATTAGTAGGATAG 133
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CTATCCTACTAATAGTGACTT 21
|||||||||||||||||||||
Sbjct 133 CTATCCTACTAATAGTGACTT 153
> gi|1034664461|ref|XR_929738.2| PREDICTED: Homo sapiens prostaglandin
reductase 1 (PTGR1), transcript variant X1, misc_RNA
Length=1508
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGTCACTATTAGTAGGATAG 48
|||||||||||||||||||||
Sbjct 328 AAGTCACTATTAGTAGGATAG 308
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CTATCCTACTAATAGTGACTT 21
|||||||||||||||||||||
Sbjct 308 CTATCCTACTAATAGTGACTT 328
> gi|1034664463|ref|XM_011518394.2| PREDICTED: Homo sapiens prostaglandin
reductase 1 (PTGR1), transcript variant X3, mRNA
Length=1283
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGTCACTATTAGTAGGATAG 48
|||||||||||||||||||||
Sbjct 328 AAGTCACTATTAGTAGGATAG 308
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CTATCCTACTAATAGTGACTT 21
|||||||||||||||||||||
Sbjct 308 CTATCCTACTAATAGTGACTT 328
> gi|226059132|ref|NM_012212.3| Homo sapiens prostaglandin reductase
1 (PTGR1), transcript variant 2, mRNA
Length=1249
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGTCACTATTAGTAGGATAG 48
|||||||||||||||||||||
Sbjct 168 AAGTCACTATTAGTAGGATAG 148
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CTATCCTACTAATAGTGACTT 21
|||||||||||||||||||||
Sbjct 148 CTATCCTACTAATAGTGACTT 168
> gi|226059158|ref|NM_001146108.1| Homo sapiens prostaglandin reductase
1 (PTGR1), transcript variant 1, mRNA
Length=1409
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGTCACTATTAGTAGGATAG 48
|||||||||||||||||||||
Sbjct 328 AAGTCACTATTAGTAGGATAG 308
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CTATCCTACTAATAGTGACTT 21
|||||||||||||||||||||
Sbjct 308 CTATCCTACTAATAGTGACTT 328
> gi|226056129|ref|NM_001146109.1| Homo sapiens prostaglandin reductase
1 (PTGR1), transcript variant 3, mRNA
Length=1220
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAGTCACTATTAGTAGGATAG 48
|||||||||||||||||||||
Sbjct 328 AAGTCACTATTAGTAGGATAG 308
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CTATCCTACTAATAGTGACTT 21
|||||||||||||||||||||
Sbjct 308 CTATCCTACTAATAGTGACTT 328
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 21028271724
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2