BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= CTAGCCCGGCCAAGGAAGTGCAATTGGTTTTTTGTTAAT (evalue = 10)
Length=39
Score E
Sequences producing significant alignments: (Bits) Value
gi|442796430|ref|NM_014062.2| Homo sapiens NIN1/PSMD8 binding p... 36.2 0.17
gi|442796465|ref|NR_074074.1| Homo sapiens NIN1/PSMD8 binding p... 36.2 0.17
gi|1034689748|ref|XR_001735809.1| PREDICTED: Homo sapiens uncha... 32.2 2.6
gi|1034648168|ref|XM_017010176.1| PREDICTED: Homo sapiens synap... 32.2 2.6
gi|1034648170|ref|XM_017010177.1| PREDICTED: Homo sapiens synap... 32.2 2.6
gi|1034648175|ref|XM_005248635.4| PREDICTED: Homo sapiens synap... 32.2 2.6
gi|1034648176|ref|XM_017010179.1| PREDICTED: Homo sapiens synap... 32.2 2.6
gi|1034648173|ref|XM_017010178.1| PREDICTED: Homo sapiens synap... 32.2 2.6
gi|228008292|ref|NM_001159676.1| Homo sapiens synaptotagmin bin... 32.2 2.6
gi|228008397|ref|NM_001159674.1| Homo sapiens synaptotagmin bin... 32.2 2.6
gi|359338990|ref|NM_001253771.1| Homo sapiens synaptotagmin bin... 32.2 2.6
gi|228008395|ref|NM_001159673.1| Homo sapiens synaptotagmin bin... 32.2 2.6
gi|228008399|ref|NM_001159677.1| Homo sapiens synaptotagmin bin... 32.2 2.6
> gi|442796430|ref|NM_014062.2| Homo sapiens NIN1/PSMD8 binding
protein 1 homolog (NOB1), transcript variant 1, mRNA
Length=1775
Score = 36.2 bits (18), Expect = 0.17
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 9 GCCAAGGAAGTGCAATTG 26
||||||||||||||||||
Sbjct 1505 GCCAAGGAAGTGCAATTG 1522
> gi|442796465|ref|NR_074074.1| Homo sapiens NIN1/PSMD8 binding
protein 1 homolog (NOB1), transcript variant 2, non-coding
RNA
Length=1644
Score = 36.2 bits (18), Expect = 0.17
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 9 GCCAAGGAAGTGCAATTG 26
||||||||||||||||||
Sbjct 1374 GCCAAGGAAGTGCAATTG 1391
> gi|1034689748|ref|XR_001735809.1| PREDICTED: Homo sapiens uncharacterized
LOC107985390 (LOC107985390), ncRNA
Length=1154
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 23 ATTGGTTTTTTGTTAA 38
||||||||||||||||
Sbjct 322 ATTGGTTTTTTGTTAA 307
> gi|1034648168|ref|XM_017010176.1| PREDICTED: Homo sapiens synaptotagmin
binding cytoplasmic RNA interacting protein (SYNCRIP),
transcript variant X1, mRNA
Length=6543
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 22 AATTGGTTTTTTGTTA 37
||||||||||||||||
Sbjct 3743 AATTGGTTTTTTGTTA 3758
> gi|1034648170|ref|XM_017010177.1| PREDICTED: Homo sapiens synaptotagmin
binding cytoplasmic RNA interacting protein (SYNCRIP),
transcript variant X2, mRNA
Length=6540
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 22 AATTGGTTTTTTGTTA 37
||||||||||||||||
Sbjct 3740 AATTGGTTTTTTGTTA 3755
> gi|1034648175|ref|XM_005248635.4| PREDICTED: Homo sapiens synaptotagmin
binding cytoplasmic RNA interacting protein (SYNCRIP),
transcript variant X5, mRNA
Length=6398
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 22 AATTGGTTTTTTGTTA 37
||||||||||||||||
Sbjct 3598 AATTGGTTTTTTGTTA 3613
> gi|1034648176|ref|XM_017010179.1| PREDICTED: Homo sapiens synaptotagmin
binding cytoplasmic RNA interacting protein (SYNCRIP),
transcript variant X6, mRNA
Length=6333
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 22 AATTGGTTTTTTGTTA 37
||||||||||||||||
Sbjct 3533 AATTGGTTTTTTGTTA 3548
> gi|1034648173|ref|XM_017010178.1| PREDICTED: Homo sapiens synaptotagmin
binding cytoplasmic RNA interacting protein (SYNCRIP),
transcript variant X4, mRNA
Length=6361
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 22 AATTGGTTTTTTGTTA 37
||||||||||||||||
Sbjct 3561 AATTGGTTTTTTGTTA 3576
> gi|228008292|ref|NM_001159676.1| Homo sapiens synaptotagmin binding
cytoplasmic RNA interacting protein (SYNCRIP), transcript
variant 5, mRNA
Length=6805
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 22 AATTGGTTTTTTGTTA 37
||||||||||||||||
Sbjct 3448 AATTGGTTTTTTGTTA 3463
> gi|228008397|ref|NM_001159674.1| Homo sapiens synaptotagmin binding
cytoplasmic RNA interacting protein (SYNCRIP), transcript
variant 3, mRNA
Length=6797
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 22 AATTGGTTTTTTGTTA 37
||||||||||||||||
Sbjct 3440 AATTGGTTTTTTGTTA 3455
> gi|359338990|ref|NM_001253771.1| Homo sapiens synaptotagmin binding
cytoplasmic RNA interacting protein (SYNCRIP), transcript
variant 7, mRNA
Length=6716
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 22 AATTGGTTTTTTGTTA 37
||||||||||||||||
Sbjct 3359 AATTGGTTTTTTGTTA 3374
> gi|228008395|ref|NM_001159673.1| Homo sapiens synaptotagmin binding
cytoplasmic RNA interacting protein (SYNCRIP), transcript
variant 2, mRNA
Length=6774
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 22 AATTGGTTTTTTGTTA 37
||||||||||||||||
Sbjct 3417 AATTGGTTTTTTGTTA 3432
> gi|228008399|ref|NM_001159677.1| Homo sapiens synaptotagmin binding
cytoplasmic RNA interacting protein (SYNCRIP), transcript
variant 6, mRNA
Length=7337
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 22 AATTGGTTTTTTGTTA 37
||||||||||||||||
Sbjct 3980 AATTGGTTTTTTGTTA 3995
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 12850610498
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2