BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= CTAGCCCGGCCAAGGAAGTGCAATTGCATACTCGAGTATGCAATTGCACTTCCTTGGTTTTTTGTTAA
T (evalue = 10)
Length=69
Score E
Sequences producing significant alignments: (Bits) Value
gi|442796430|ref|NM_014062.2| Homo sapiens NIN1/PSMD8 binding p... 44.1 0.002
gi|442796465|ref|NR_074074.1| Homo sapiens NIN1/PSMD8 binding p... 44.1 0.002
gi|1034685528|ref|XR_001733847.1| PREDICTED: Homo sapiens uncha... 32.2 6.0
gi|1034685526|ref|XR_917523.2| PREDICTED: Homo sapiens uncharac... 32.2 6.0
gi|1034685529|ref|XR_001733848.1| PREDICTED: Homo sapiens uncha... 32.2 6.0
gi|1034685525|ref|XR_001733846.1| PREDICTED: Homo sapiens uncha... 32.2 6.0
gi|1034685527|ref|XR_917522.2| PREDICTED: Homo sapiens uncharac... 32.2 6.0
gi|1034597579|ref|XR_001752383.1| PREDICTED: Homo sapiens uncha... 32.2 6.0
gi|1034597577|ref|XR_933802.2| PREDICTED: Homo sapiens uncharac... 32.2 6.0
gi|1034597580|ref|XR_001752384.1| PREDICTED: Homo sapiens uncha... 32.2 6.0
gi|1034597576|ref|XR_001752382.1| PREDICTED: Homo sapiens uncha... 32.2 6.0
gi|1034597578|ref|XR_933801.2| PREDICTED: Homo sapiens uncharac... 32.2 6.0
gi|1034615953|ref|XM_005246782.4| PREDICTED: Homo sapiens cycli... 32.2 6.0
> gi|442796430|ref|NM_014062.2| Homo sapiens NIN1/PSMD8 binding
protein 1 homolog (NOB1), transcript variant 1, mRNA
Length=1775
Score = 44.1 bits (22), Expect = 0.002
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 9 GCCAAGGAAGTGCAATTGCATA 30
||||||||||||||||||||||
Sbjct 1505 GCCAAGGAAGTGCAATTGCATA 1526
Score = 42.1 bits (21), Expect = 0.006
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 37 TATGCAATTGCACTTCCTTGG 57
|||||||||||||||||||||
Sbjct 1526 TATGCAATTGCACTTCCTTGG 1506
> gi|442796465|ref|NR_074074.1| Homo sapiens NIN1/PSMD8 binding
protein 1 homolog (NOB1), transcript variant 2, non-coding
RNA
Length=1644
Score = 44.1 bits (22), Expect = 0.002
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 9 GCCAAGGAAGTGCAATTGCATA 30
||||||||||||||||||||||
Sbjct 1374 GCCAAGGAAGTGCAATTGCATA 1395
Score = 42.1 bits (21), Expect = 0.006
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 37 TATGCAATTGCACTTCCTTGG 57
|||||||||||||||||||||
Sbjct 1395 TATGCAATTGCACTTCCTTGG 1375
> gi|1034685528|ref|XR_001733847.1| PREDICTED: Homo sapiens uncharacterized
LOC105371366 (LOC105371366), transcript variant
X4, ncRNA
Length=11506
Score = 32.2 bits (16), Expect = 6.0
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 45 TGCACTTCCTTGGTTT 60
||||||||||||||||
Sbjct 11063 TGCACTTCCTTGGTTT 11048
> gi|1034685526|ref|XR_917523.2| PREDICTED: Homo sapiens uncharacterized
LOC105371366 (LOC105371366), transcript variant X2,
ncRNA
Length=10767
Score = 32.2 bits (16), Expect = 6.0
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 45 TGCACTTCCTTGGTTT 60
||||||||||||||||
Sbjct 10324 TGCACTTCCTTGGTTT 10309
> gi|1034685529|ref|XR_001733848.1| PREDICTED: Homo sapiens uncharacterized
LOC105371366 (LOC105371366), transcript variant
X5, ncRNA
Length=9654
Score = 32.2 bits (16), Expect = 6.0
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 45 TGCACTTCCTTGGTTT 60
||||||||||||||||
Sbjct 9211 TGCACTTCCTTGGTTT 9196
> gi|1034685525|ref|XR_001733846.1| PREDICTED: Homo sapiens uncharacterized
LOC105371366 (LOC105371366), transcript variant
X1, ncRNA
Length=10767
Score = 32.2 bits (16), Expect = 6.0
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 45 TGCACTTCCTTGGTTT 60
||||||||||||||||
Sbjct 10324 TGCACTTCCTTGGTTT 10309
> gi|1034685527|ref|XR_917522.2| PREDICTED: Homo sapiens uncharacterized
LOC105371366 (LOC105371366), transcript variant X3,
ncRNA
Length=10624
Score = 32.2 bits (16), Expect = 6.0
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 45 TGCACTTCCTTGGTTT 60
||||||||||||||||
Sbjct 10181 TGCACTTCCTTGGTTT 10166
> gi|1034597579|ref|XR_001752383.1| PREDICTED: Homo sapiens uncharacterized
LOC105371366 (LOC105371366), transcript variant
X4, ncRNA
Length=11516
Score = 32.2 bits (16), Expect = 6.0
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 45 TGCACTTCCTTGGTTT 60
||||||||||||||||
Sbjct 11072 TGCACTTCCTTGGTTT 11057
> gi|1034597577|ref|XR_933802.2| PREDICTED: Homo sapiens uncharacterized
LOC105371366 (LOC105371366), transcript variant X2,
ncRNA
Length=10777
Score = 32.2 bits (16), Expect = 6.0
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 45 TGCACTTCCTTGGTTT 60
||||||||||||||||
Sbjct 10333 TGCACTTCCTTGGTTT 10318
> gi|1034597580|ref|XR_001752384.1| PREDICTED: Homo sapiens uncharacterized
LOC105371366 (LOC105371366), transcript variant
X5, ncRNA
Length=9664
Score = 32.2 bits (16), Expect = 6.0
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 45 TGCACTTCCTTGGTTT 60
||||||||||||||||
Sbjct 9220 TGCACTTCCTTGGTTT 9205
> gi|1034597576|ref|XR_001752382.1| PREDICTED: Homo sapiens uncharacterized
LOC105371366 (LOC105371366), transcript variant
X1, ncRNA
Length=10777
Score = 32.2 bits (16), Expect = 6.0
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 45 TGCACTTCCTTGGTTT 60
||||||||||||||||
Sbjct 10333 TGCACTTCCTTGGTTT 10318
> gi|1034597578|ref|XR_933801.2| PREDICTED: Homo sapiens uncharacterized
LOC105371366 (LOC105371366), transcript variant X3,
ncRNA
Length=10634
Score = 32.2 bits (16), Expect = 6.0
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 45 TGCACTTCCTTGGTTT 60
||||||||||||||||
Sbjct 10190 TGCACTTCCTTGGTTT 10175
> gi|1034615953|ref|XM_005246782.4| PREDICTED: Homo sapiens cyclin-dependent
kinase 15 (CDK15), transcript variant X3, mRNA
Length=3920
Score = 32.2 bits (16), Expect = 6.0
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 46 GCACTTCCTTGGTTTT 61
||||||||||||||||
Sbjct 259 GCACTTCCTTGGTTTT 244
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 29781053883
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2