BLASTN 2.4.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: rna.fa 176,426 sequences; 587,117,901 total letters Query= CTAGCCCGGCCAAGGAAGTGCAATTGCATACTCGAGTATGCAATTGCACTTCCTTGGTTTTTGTTAAT (evalue = 10) Length=68 Score E Sequences producing significant alignments: (Bits) Value gi|442796430|ref|NM_014062.2| Homo sapiens NIN1/PSMD8 binding p... 44.1 0.002 gi|442796465|ref|NR_074074.1| Homo sapiens NIN1/PSMD8 binding p... 44.1 0.002 gi|1034600303|ref|XR_001752549.1| PREDICTED: Homo sapiens tetra... 36.2 0.38 gi|342672025|ref|NM_006599.3| Homo sapiens nuclear factor of ac... 34.2 1.5 gi|342672015|ref|NM_173214.2| Homo sapiens nuclear factor of ac... 34.2 1.5 gi|342672023|ref|NM_001113178.2| Homo sapiens nuclear factor of... 34.2 1.5 gi|342672024|ref|NM_138713.3| Homo sapiens nuclear factor of ac... 34.2 1.5 gi|342672020|ref|NM_138714.3| Homo sapiens nuclear factor of ac... 34.2 1.5 gi|1034687368|ref|XR_918828.2| PREDICTED: Homo sapiens uncharac... 32.2 5.9 gi|1034685528|ref|XR_001733847.1| PREDICTED: Homo sapiens uncha... 32.2 5.9 gi|1034685526|ref|XR_917523.2| PREDICTED: Homo sapiens uncharac... 32.2 5.9 gi|1034685529|ref|XR_001733848.1| PREDICTED: Homo sapiens uncha... 32.2 5.9 gi|1034685525|ref|XR_001733846.1| PREDICTED: Homo sapiens uncha... 32.2 5.9 gi|1034685527|ref|XR_917522.2| PREDICTED: Homo sapiens uncharac... 32.2 5.9 gi|1034679374|ref|XR_001735391.1| PREDICTED: Homo sapiens uncha... 32.2 5.9 gi|1034678717|ref|XR_001734640.1| PREDICTED: Homo sapiens uncha... 32.2 5.9 gi|1034605226|ref|XR_935279.2| PREDICTED: Homo sapiens uncharac... 32.2 5.9 gi|1034597579|ref|XR_001752383.1| PREDICTED: Homo sapiens uncha... 32.2 5.9 gi|1034597577|ref|XR_933802.2| PREDICTED: Homo sapiens uncharac... 32.2 5.9 gi|1034597580|ref|XR_001752384.1| PREDICTED: Homo sapiens uncha... 32.2 5.9 gi|1034597576|ref|XR_001752382.1| PREDICTED: Homo sapiens uncha... 32.2 5.9 gi|1034597578|ref|XR_933801.2| PREDICTED: Homo sapiens uncharac... 32.2 5.9 gi|574957172|ref|NM_001257191.2| Homo sapiens DEAD-box helicase... 32.2 5.9 gi|1034572175|ref|XM_017017251.1| PREDICTED: Homo sapiens DEAD-... 32.2 5.9 gi|574957069|ref|NM_004397.5| Homo sapiens DEAD-box helicase 6 ... 32.2 5.9 gi|767969696|ref|XM_011542644.1| PREDICTED: Homo sapiens DEAD-b... 32.2 5.9 gi|767969698|ref|XM_011542645.1| PREDICTED: Homo sapiens DEAD-b... 32.2 5.9 gi|1034615953|ref|XM_005246782.4| PREDICTED: Homo sapiens cycli... 32.2 5.9 gi|1034565652|ref|XR_001738465.1| PREDICTED: Homo sapiens uncha... 32.2 5.9 gi|1034565051|ref|XR_001738126.1| PREDICTED: Homo sapiens uncha... 32.2 5.9 > gi|442796430|ref|NM_014062.2| Homo sapiens NIN1/PSMD8 binding protein 1 homolog (NOB1), transcript variant 1, mRNA Length=1775 Score = 44.1 bits (22), Expect = 0.002 Identities = 22/22 (100%), Gaps = 0/22 (0%) Strand=Plus/Plus Query 9 GCCAAGGAAGTGCAATTGCATA 30 |||||||||||||||||||||| Sbjct 1505 GCCAAGGAAGTGCAATTGCATA 1526 Score = 42.1 bits (21), Expect = 0.006 Identities = 21/21 (100%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 37 TATGCAATTGCACTTCCTTGG 57 ||||||||||||||||||||| Sbjct 1526 TATGCAATTGCACTTCCTTGG 1506 > gi|442796465|ref|NR_074074.1| Homo sapiens NIN1/PSMD8 binding protein 1 homolog (NOB1), transcript variant 2, non-coding RNA Length=1644 Score = 44.1 bits (22), Expect = 0.002 Identities = 22/22 (100%), Gaps = 0/22 (0%) Strand=Plus/Plus Query 9 GCCAAGGAAGTGCAATTGCATA 30 |||||||||||||||||||||| Sbjct 1374 GCCAAGGAAGTGCAATTGCATA 1395 Score = 42.1 bits (21), Expect = 0.006 Identities = 21/21 (100%), Gaps = 0/21 (0%) Strand=Plus/Minus Query 37 TATGCAATTGCACTTCCTTGG 57 ||||||||||||||||||||| Sbjct 1395 TATGCAATTGCACTTCCTTGG 1375 > gi|1034600303|ref|XR_001752549.1| PREDICTED: Homo sapiens tetratricopeptide repeat domain 19 (TTC19), transcript variant X3, misc_RNA Length=4621 Score = 36.2 bits (18), Expect = 0.38 Identities = 18/18 (100%), Gaps = 0/18 (0%) Strand=Plus/Plus Query 51 TCCTTGGTTTTTGTTAAT 68 |||||||||||||||||| Sbjct 3108 TCCTTGGTTTTTGTTAAT 3125 > gi|342672025|ref|NM_006599.3| Homo sapiens nuclear factor of activated T-cells 5, tonicity-responsive (NFAT5), transcript variant 3, mRNA Length=13253 Score = 34.2 bits (17), Expect = 1.5 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Plus Query 52 CCTTGGTTTTTGTTAAT 68 ||||||||||||||||| Sbjct 10544 CCTTGGTTTTTGTTAAT 10560 > gi|342672015|ref|NM_173214.2| Homo sapiens nuclear factor of activated T-cells 5, tonicity-responsive (NFAT5), transcript variant 4, mRNA Length=13315 Score = 34.2 bits (17), Expect = 1.5 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Plus Query 52 CCTTGGTTTTTGTTAAT 68 ||||||||||||||||| Sbjct 10606 CCTTGGTTTTTGTTAAT 10622 > gi|342672023|ref|NM_001113178.2| Homo sapiens nuclear factor of activated T-cells 5, tonicity-responsive (NFAT5), transcript variant 6, mRNA Length=13304 Score = 34.2 bits (17), Expect = 1.5 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Plus Query 52 CCTTGGTTTTTGTTAAT 68 ||||||||||||||||| Sbjct 10595 CCTTGGTTTTTGTTAAT 10611 > gi|342672024|ref|NM_138713.3| Homo sapiens nuclear factor of activated T-cells 5, tonicity-responsive (NFAT5), transcript variant 2, mRNA Length=13307 Score = 34.2 bits (17), Expect = 1.5 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Plus Query 52 CCTTGGTTTTTGTTAAT 68 ||||||||||||||||| Sbjct 10598 CCTTGGTTTTTGTTAAT 10614 > gi|342672020|ref|NM_138714.3| Homo sapiens nuclear factor of activated T-cells 5, tonicity-responsive (NFAT5), transcript variant 1, mRNA Length=13369 Score = 34.2 bits (17), Expect = 1.5 Identities = 17/17 (100%), Gaps = 0/17 (0%) Strand=Plus/Plus Query 52 CCTTGGTTTTTGTTAAT 68 ||||||||||||||||| Sbjct 10660 CCTTGGTTTTTGTTAAT 10676 > gi|1034687368|ref|XR_918828.2| PREDICTED: Homo sapiens uncharacterized LOC105372017 (LOC105372017), ncRNA Length=677 Score = 32.2 bits (16), Expect = 5.9 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Minus Query 49 CTTCCTTGGTTTTTGT 64 |||||||||||||||| Sbjct 373 CTTCCTTGGTTTTTGT 358 > gi|1034685528|ref|XR_001733847.1| PREDICTED: Homo sapiens uncharacterized LOC105371366 (LOC105371366), transcript variant X4, ncRNA Length=11506 Score = 32.2 bits (16), Expect = 5.9 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Minus Query 45 TGCACTTCCTTGGTTT 60 |||||||||||||||| Sbjct 11063 TGCACTTCCTTGGTTT 11048 > gi|1034685526|ref|XR_917523.2| PREDICTED: Homo sapiens uncharacterized LOC105371366 (LOC105371366), transcript variant X2, ncRNA Length=10767 Score = 32.2 bits (16), Expect = 5.9 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Minus Query 45 TGCACTTCCTTGGTTT 60 |||||||||||||||| Sbjct 10324 TGCACTTCCTTGGTTT 10309 > gi|1034685529|ref|XR_001733848.1| PREDICTED: Homo sapiens uncharacterized LOC105371366 (LOC105371366), transcript variant X5, ncRNA Length=9654 Score = 32.2 bits (16), Expect = 5.9 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Minus Query 45 TGCACTTCCTTGGTTT 60 |||||||||||||||| Sbjct 9211 TGCACTTCCTTGGTTT 9196 > gi|1034685525|ref|XR_001733846.1| PREDICTED: Homo sapiens uncharacterized LOC105371366 (LOC105371366), transcript variant X1, ncRNA Length=10767 Score = 32.2 bits (16), Expect = 5.9 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Minus Query 45 TGCACTTCCTTGGTTT 60 |||||||||||||||| Sbjct 10324 TGCACTTCCTTGGTTT 10309 > gi|1034685527|ref|XR_917522.2| PREDICTED: Homo sapiens uncharacterized LOC105371366 (LOC105371366), transcript variant X3, ncRNA Length=10624 Score = 32.2 bits (16), Expect = 5.9 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Minus Query 45 TGCACTTCCTTGGTTT 60 |||||||||||||||| Sbjct 10181 TGCACTTCCTTGGTTT 10166 > gi|1034679374|ref|XR_001735391.1| PREDICTED: Homo sapiens uncharacterized LOC107985263 (LOC107985263), ncRNA Length=2125 Score = 32.2 bits (16), Expect = 5.9 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Plus Query 51 TCCTTGGTTTTTGTTA 66 |||||||||||||||| Sbjct 1108 TCCTTGGTTTTTGTTA 1123 > gi|1034678717|ref|XR_001734640.1| PREDICTED: Homo sapiens uncharacterized LOC107985054 (LOC107985054), ncRNA Length=3051 Score = 32.2 bits (16), Expect = 5.9 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Plus Query 49 CTTCCTTGGTTTTTGT 64 |||||||||||||||| Sbjct 1352 CTTCCTTGGTTTTTGT 1367 > gi|1034605226|ref|XR_935279.2| PREDICTED: Homo sapiens uncharacterized LOC105372017 (LOC105372017), ncRNA Length=677 Score = 32.2 bits (16), Expect = 5.9 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Minus Query 49 CTTCCTTGGTTTTTGT 64 |||||||||||||||| Sbjct 373 CTTCCTTGGTTTTTGT 358 > gi|1034597579|ref|XR_001752383.1| PREDICTED: Homo sapiens uncharacterized LOC105371366 (LOC105371366), transcript variant X4, ncRNA Length=11516 Score = 32.2 bits (16), Expect = 5.9 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Minus Query 45 TGCACTTCCTTGGTTT 60 |||||||||||||||| Sbjct 11072 TGCACTTCCTTGGTTT 11057 > gi|1034597577|ref|XR_933802.2| PREDICTED: Homo sapiens uncharacterized LOC105371366 (LOC105371366), transcript variant X2, ncRNA Length=10777 Score = 32.2 bits (16), Expect = 5.9 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Minus Query 45 TGCACTTCCTTGGTTT 60 |||||||||||||||| Sbjct 10333 TGCACTTCCTTGGTTT 10318 > gi|1034597580|ref|XR_001752384.1| PREDICTED: Homo sapiens uncharacterized LOC105371366 (LOC105371366), transcript variant X5, ncRNA Length=9664 Score = 32.2 bits (16), Expect = 5.9 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Minus Query 45 TGCACTTCCTTGGTTT 60 |||||||||||||||| Sbjct 9220 TGCACTTCCTTGGTTT 9205 > gi|1034597576|ref|XR_001752382.1| PREDICTED: Homo sapiens uncharacterized LOC105371366 (LOC105371366), transcript variant X1, ncRNA Length=10777 Score = 32.2 bits (16), Expect = 5.9 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Minus Query 45 TGCACTTCCTTGGTTT 60 |||||||||||||||| Sbjct 10333 TGCACTTCCTTGGTTT 10318 > gi|1034597578|ref|XR_933801.2| PREDICTED: Homo sapiens uncharacterized LOC105371366 (LOC105371366), transcript variant X3, ncRNA Length=10634 Score = 32.2 bits (16), Expect = 5.9 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Minus Query 45 TGCACTTCCTTGGTTT 60 |||||||||||||||| Sbjct 10190 TGCACTTCCTTGGTTT 10175 > gi|574957172|ref|NM_001257191.2| Homo sapiens DEAD-box helicase 6 (DDX6), transcript variant 2, mRNA Length=6173 Score = 32.2 bits (16), Expect = 5.9 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Plus Query 53 CTTGGTTTTTGTTAAT 68 |||||||||||||||| Sbjct 6108 CTTGGTTTTTGTTAAT 6123 > gi|1034572175|ref|XM_017017251.1| PREDICTED: Homo sapiens DEAD-box helicase 6 (DDX6), transcript variant X4, mRNA Length=6043 Score = 32.2 bits (16), Expect = 5.9 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Plus Query 53 CTTGGTTTTTGTTAAT 68 |||||||||||||||| Sbjct 5996 CTTGGTTTTTGTTAAT 6011 > gi|574957069|ref|NM_004397.5| Homo sapiens DEAD-box helicase 6 (DDX6), transcript variant 1, mRNA Length=6246 Score = 32.2 bits (16), Expect = 5.9 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Plus Query 53 CTTGGTTTTTGTTAAT 68 |||||||||||||||| Sbjct 6180 CTTGGTTTTTGTTAAT 6195 > gi|767969696|ref|XM_011542644.1| PREDICTED: Homo sapiens DEAD-box helicase 6 (DDX6), transcript variant X2, mRNA Length=6098 Score = 32.2 bits (16), Expect = 5.9 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Plus Query 53 CTTGGTTTTTGTTAAT 68 |||||||||||||||| Sbjct 6051 CTTGGTTTTTGTTAAT 6066 > gi|767969698|ref|XM_011542645.1| PREDICTED: Homo sapiens DEAD-box helicase 6 (DDX6), transcript variant X3, mRNA Length=6080 Score = 32.2 bits (16), Expect = 5.9 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Plus Query 53 CTTGGTTTTTGTTAAT 68 |||||||||||||||| Sbjct 6033 CTTGGTTTTTGTTAAT 6048 > gi|1034615953|ref|XM_005246782.4| PREDICTED: Homo sapiens cyclin-dependent kinase 15 (CDK15), transcript variant X3, mRNA Length=3920 Score = 32.2 bits (16), Expect = 5.9 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Minus Query 46 GCACTTCCTTGGTTTT 61 |||||||||||||||| Sbjct 259 GCACTTCCTTGGTTTT 244 > gi|1034565652|ref|XR_001738465.1| PREDICTED: Homo sapiens uncharacterized LOC107985263 (LOC107985263), ncRNA Length=2125 Score = 32.2 bits (16), Expect = 5.9 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Plus Query 51 TCCTTGGTTTTTGTTA 66 |||||||||||||||| Sbjct 1108 TCCTTGGTTTTTGTTA 1123 > gi|1034565051|ref|XR_001738126.1| PREDICTED: Homo sapiens uncharacterized LOC107985054 (LOC107985054), ncRNA Length=3052 Score = 32.2 bits (16), Expect = 5.9 Identities = 16/16 (100%), Gaps = 0/16 (0%) Strand=Plus/Plus Query 49 CTTCCTTGGTTTTTGT 64 |||||||||||||||| Sbjct 1353 CTTCCTTGGTTTTTGT 1368 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Effective search space used: 29197111650 Database: rna.fa Posted date: Jan 6, 2017 3:58 PM Number of letters in database: 587,117,901 Number of sequences in database: 176,426 Matrix: blastn matrix 1 -3 Gap Penalties: Existence: 5, Extension: 2