BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= CGTGCCCGCTCTCCCTTC (evalue = 10)
Length=18
Score E
Sequences producing significant alignments: (Bits) Value
gi|222537766|ref|NR_026730.1| Homo sapiens transmembrane phosph... 36.2 0.023
gi|672228762|ref|NR_125770.1| Homo sapiens long intergenic non-... 28.2 5.5
gi|323714264|ref|NM_001017536.1| Homo sapiens vitamin D (1,25- ... 28.2 5.5
gi|63054844|ref|NM_001017535.1| Homo sapiens vitamin D (1,25- d... 28.2 5.5
gi|63054843|ref|NM_000376.2| Homo sapiens vitamin D (1,25- dihy... 28.2 5.5
gi|209413746|ref|NM_006686.3| Homo sapiens actin like 7B (ACTL7... 28.2 5.5
gi|1034615645|ref|XM_011533014.2| PREDICTED: Homo sapiens lipid... 28.2 5.5
gi|1034615654|ref|XR_939703.2| PREDICTED: Homo sapiens lipid dr... 28.2 5.5
gi|1034615646|ref|XR_939700.2| PREDICTED: Homo sapiens lipid dr... 28.2 5.5
gi|1034615648|ref|XR_939701.2| PREDICTED: Homo sapiens lipid dr... 28.2 5.5
gi|1034615649|ref|XR_001738875.1| PREDICTED: Homo sapiens lipid... 28.2 5.5
gi|1034615650|ref|XR_939702.2| PREDICTED: Homo sapiens lipid dr... 28.2 5.5
gi|1034615651|ref|XR_001738876.1| PREDICTED: Homo sapiens lipid... 28.2 5.5
gi|1034615652|ref|XR_001738877.1| PREDICTED: Homo sapiens lipid... 28.2 5.5
gi|1034615655|ref|XR_001738879.1| PREDICTED: Homo sapiens lipid... 28.2 5.5
gi|544186066|ref|NM_001282719.1| Homo sapiens lipid droplet ass... 28.2 5.5
gi|544186064|ref|NM_001282724.1| Homo sapiens lipid droplet ass... 28.2 5.5
gi|544186025|ref|NM_021925.3| Homo sapiens lipid droplet associ... 28.2 5.5
gi|544186005|ref|NM_001282723.1| Homo sapiens lipid droplet ass... 28.2 5.5
gi|544186007|ref|NM_001282720.1| Homo sapiens lipid droplet ass... 28.2 5.5
gi|544186079|ref|NM_001282721.1| Homo sapiens lipid droplet ass... 28.2 5.5
gi|544186130|ref|NR_104233.1| Homo sapiens lipid droplet associ... 28.2 5.5
gi|544186023|ref|NM_001282722.1| Homo sapiens lipid droplet ass... 28.2 5.5
gi|1034615647|ref|XR_001738874.1| PREDICTED: Homo sapiens lipid... 28.2 5.5
gi|703491592|ref|NM_207429.3| Homo sapiens colorectal cancer as... 28.2 5.5
gi|428229679|ref|NM_005851.4| Homo sapiens cyclin-dependent kin... 28.2 5.5
gi|767945728|ref|XM_011515491.1| PREDICTED: Homo sapiens radial... 28.2 5.5
gi|767945732|ref|XM_011515493.1| PREDICTED: Homo sapiens radial... 28.2 5.5
gi|767945725|ref|XM_006715766.2| PREDICTED: Homo sapiens radial... 28.2 5.5
gi|153792460|ref|NM_001099697.1| Homo sapiens radial spoke head... 28.2 5.5
gi|1034654603|ref|XM_011515212.2| PREDICTED: Homo sapiens radia... 28.2 5.5
gi|1034654601|ref|XM_017011870.1| PREDICTED: Homo sapiens radia... 28.2 5.5
gi|157502186|ref|NM_173565.3| Homo sapiens radial spoke head 10... 28.2 5.5
gi|767945041|ref|XM_011515203.1| PREDICTED: Homo sapiens radial... 28.2 5.5
gi|767945049|ref|XM_011515207.1| PREDICTED: Homo sapiens radial... 28.2 5.5
gi|1034654599|ref|XM_011515208.2| PREDICTED: Homo sapiens radia... 28.2 5.5
gi|1034654598|ref|XM_005249659.3| PREDICTED: Homo sapiens radia... 28.2 5.5
gi|1034654600|ref|XM_011515209.2| PREDICTED: Homo sapiens radia... 28.2 5.5
gi|1034654597|ref|XM_011515204.2| PREDICTED: Homo sapiens radia... 28.2 5.5
> gi|222537766|ref|NR_026730.1| Homo sapiens transmembrane phosphoinositide
3-phosphatase and tensin homolog 2 pseudogene 1
(TPTE2P1), non-coding RNA
Length=6477
Score = 36.2 bits (18), Expect = 0.023
Identities = 18/18 (100%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 CGTGCCCGCTCTCCCTTC 18
||||||||||||||||||
Sbjct 884 CGTGCCCGCTCTCCCTTC 867
> gi|672228762|ref|NR_125770.1| Homo sapiens long intergenic non-protein
coding RNA 377 (LINC00377), long non-coding RNA
Length=927
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 CGTGCCCGCTCTCCCTTC 18
|||||| |||||||||||
Sbjct 547 CGTGCCTGCTCTCCCTTC 530
> gi|323714264|ref|NM_001017536.1| Homo sapiens vitamin D (1,25-
dihydroxyvitamin D3) receptor (VDR), transcript variant 3,
mRNA
Length=5060
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 CCCGCTCTCCCTTC 18
||||||||||||||
Sbjct 2918 CCCGCTCTCCCTTC 2905
> gi|63054844|ref|NM_001017535.1| Homo sapiens vitamin D (1,25-
dihydroxyvitamin D3) receptor (VDR), transcript variant 2,
mRNA
Length=4791
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 CCCGCTCTCCCTTC 18
||||||||||||||
Sbjct 2649 CCCGCTCTCCCTTC 2636
> gi|63054843|ref|NM_000376.2| Homo sapiens vitamin D (1,25- dihydroxyvitamin
D3) receptor (VDR), transcript variant 1, mRNA
Length=4669
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 CCCGCTCTCCCTTC 18
||||||||||||||
Sbjct 2527 CCCGCTCTCCCTTC 2514
> gi|209413746|ref|NM_006686.3| Homo sapiens actin like 7B (ACTL7B),
mRNA
Length=1408
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 CGTGCCCGCTCTCC 14
||||||||||||||
Sbjct 669 CGTGCCCGCTCTCC 656
> gi|1034615645|ref|XM_011533014.2| PREDICTED: Homo sapiens lipid
droplet associated hydrolase (LDAH), transcript variant X1,
mRNA
Length=3976
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 TGCCCGCTCTCCCT 16
||||||||||||||
Sbjct 86 TGCCCGCTCTCCCT 73
> gi|1034615654|ref|XR_939703.2| PREDICTED: Homo sapiens lipid
droplet associated hydrolase (LDAH), transcript variant X10,
misc_RNA
Length=3741
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 TGCCCGCTCTCCCT 16
||||||||||||||
Sbjct 86 TGCCCGCTCTCCCT 73
> gi|1034615646|ref|XR_939700.2| PREDICTED: Homo sapiens lipid
droplet associated hydrolase (LDAH), transcript variant X2,
misc_RNA
Length=3357
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 TGCCCGCTCTCCCT 16
||||||||||||||
Sbjct 86 TGCCCGCTCTCCCT 73
> gi|1034615648|ref|XR_939701.2| PREDICTED: Homo sapiens lipid
droplet associated hydrolase (LDAH), transcript variant X4,
misc_RNA
Length=2800
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 TGCCCGCTCTCCCT 16
||||||||||||||
Sbjct 86 TGCCCGCTCTCCCT 73
> gi|1034615649|ref|XR_001738875.1| PREDICTED: Homo sapiens lipid
droplet associated hydrolase (LDAH), transcript variant X5,
misc_RNA
Length=2177
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 TGCCCGCTCTCCCT 16
||||||||||||||
Sbjct 86 TGCCCGCTCTCCCT 73
> gi|1034615650|ref|XR_939702.2| PREDICTED: Homo sapiens lipid
droplet associated hydrolase (LDAH), transcript variant X6,
misc_RNA
Length=2066
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 TGCCCGCTCTCCCT 16
||||||||||||||
Sbjct 86 TGCCCGCTCTCCCT 73
> gi|1034615651|ref|XR_001738876.1| PREDICTED: Homo sapiens lipid
droplet associated hydrolase (LDAH), transcript variant X7,
misc_RNA
Length=2782
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 TGCCCGCTCTCCCT 16
||||||||||||||
Sbjct 86 TGCCCGCTCTCCCT 73
> gi|1034615652|ref|XR_001738877.1| PREDICTED: Homo sapiens lipid
droplet associated hydrolase (LDAH), transcript variant X8,
misc_RNA
Length=2159
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 TGCCCGCTCTCCCT 16
||||||||||||||
Sbjct 86 TGCCCGCTCTCCCT 73
> gi|1034615655|ref|XR_001738879.1| PREDICTED: Homo sapiens lipid
droplet associated hydrolase (LDAH), transcript variant X11,
misc_RNA
Length=1924
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 TGCCCGCTCTCCCT 16
||||||||||||||
Sbjct 86 TGCCCGCTCTCCCT 73
> gi|544186066|ref|NM_001282719.1| Homo sapiens lipid droplet associated
hydrolase (LDAH), transcript variant 2, mRNA
Length=3837
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 TGCCCGCTCTCCCT 16
||||||||||||||
Sbjct 77 TGCCCGCTCTCCCT 64
> gi|544186064|ref|NM_001282724.1| Homo sapiens lipid droplet associated
hydrolase (LDAH), transcript variant 7, mRNA
Length=3602
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 TGCCCGCTCTCCCT 16
||||||||||||||
Sbjct 77 TGCCCGCTCTCCCT 64
> gi|544186025|ref|NM_021925.3| Homo sapiens lipid droplet associated
hydrolase (LDAH), transcript variant 1, mRNA
Length=3963
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 TGCCCGCTCTCCCT 16
||||||||||||||
Sbjct 77 TGCCCGCTCTCCCT 64
> gi|544186005|ref|NM_001282723.1| Homo sapiens lipid droplet associated
hydrolase (LDAH), transcript variant 6, mRNA
Length=3728
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 TGCCCGCTCTCCCT 16
||||||||||||||
Sbjct 77 TGCCCGCTCTCCCT 64
> gi|544186007|ref|NM_001282720.1| Homo sapiens lipid droplet associated
hydrolase (LDAH), transcript variant 3, mRNA
Length=3819
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 TGCCCGCTCTCCCT 16
||||||||||||||
Sbjct 77 TGCCCGCTCTCCCT 64
> gi|544186079|ref|NM_001282721.1| Homo sapiens lipid droplet associated
hydrolase (LDAH), transcript variant 4, mRNA
Length=3807
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 TGCCCGCTCTCCCT 16
||||||||||||||
Sbjct 77 TGCCCGCTCTCCCT 64
> gi|544186130|ref|NR_104233.1| Homo sapiens lipid droplet associated
hydrolase (LDAH), transcript variant 8, non-coding RNA
Length=3572
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 TGCCCGCTCTCCCT 16
||||||||||||||
Sbjct 77 TGCCCGCTCTCCCT 64
> gi|544186023|ref|NM_001282722.1| Homo sapiens lipid droplet associated
hydrolase (LDAH), transcript variant 5, mRNA
Length=3663
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 TGCCCGCTCTCCCT 16
||||||||||||||
Sbjct 77 TGCCCGCTCTCCCT 64
> gi|1034615647|ref|XR_001738874.1| PREDICTED: Homo sapiens lipid
droplet associated hydrolase (LDAH), transcript variant X3,
misc_RNA
Length=3437
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 TGCCCGCTCTCCCT 16
||||||||||||||
Sbjct 86 TGCCCGCTCTCCCT 73
> gi|703491592|ref|NM_207429.3| Homo sapiens colorectal cancer
associated 1 (COLCA1), transcript variant 3, mRNA
Length=5581
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 3 TGCCCGCTCTCCCT 16
||||||||||||||
Sbjct 66 TGCCCGCTCTCCCT 79
> gi|428229679|ref|NM_005851.4| Homo sapiens cyclin-dependent kinase
2 associated protein 2 (CDK2AP2), transcript variant 1,
mRNA
Length=1499
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 1 CGTGCCCGCTCTCCCTTC 18
||||||||||| ||||||
Sbjct 507 CGTGCCCGCTCGCCCTTC 524
> gi|767945728|ref|XM_011515491.1| PREDICTED: Homo sapiens radial
spoke head 10 homolog B2 (RSPH10B2), transcript variant X2,
mRNA
Length=3160
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 3 TGCCCGCTCTCCCT 16
||||||||||||||
Sbjct 345 TGCCCGCTCTCCCT 358
> gi|767945732|ref|XM_011515493.1| PREDICTED: Homo sapiens radial
spoke head 10 homolog B2 (RSPH10B2), transcript variant X3,
mRNA
Length=3093
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 3 TGCCCGCTCTCCCT 16
||||||||||||||
Sbjct 278 TGCCCGCTCTCCCT 291
> gi|767945725|ref|XM_006715766.2| PREDICTED: Homo sapiens radial
spoke head 10 homolog B2 (RSPH10B2), transcript variant X1,
mRNA
Length=3268
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 3 TGCCCGCTCTCCCT 16
||||||||||||||
Sbjct 453 TGCCCGCTCTCCCT 466
> gi|153792460|ref|NM_001099697.1| Homo sapiens radial spoke head
10 homolog B2 (RSPH10B2), mRNA
Length=3106
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 3 TGCCCGCTCTCCCT 16
||||||||||||||
Sbjct 316 TGCCCGCTCTCCCT 329
> gi|1034654603|ref|XM_011515212.2| PREDICTED: Homo sapiens radial
spoke head 10 homolog B (RSPH10B), transcript variant X10,
mRNA
Length=2433
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 3 TGCCCGCTCTCCCT 16
||||||||||||||
Sbjct 818 TGCCCGCTCTCCCT 831
> gi|1034654601|ref|XM_017011870.1| PREDICTED: Homo sapiens radial
spoke head 10 homolog B (RSPH10B), transcript variant X7,
mRNA
Length=3087
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 3 TGCCCGCTCTCCCT 16
||||||||||||||
Sbjct 818 TGCCCGCTCTCCCT 831
> gi|157502186|ref|NM_173565.3| Homo sapiens radial spoke head
10 homolog B (RSPH10B), mRNA
Length=3122
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 3 TGCCCGCTCTCCCT 16
||||||||||||||
Sbjct 316 TGCCCGCTCTCCCT 329
> gi|767945041|ref|XM_011515203.1| PREDICTED: Homo sapiens radial
spoke head 10 homolog B (RSPH10B), transcript variant X1,
mRNA
Length=3213
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 3 TGCCCGCTCTCCCT 16
||||||||||||||
Sbjct 398 TGCCCGCTCTCCCT 411
> gi|767945049|ref|XM_011515207.1| PREDICTED: Homo sapiens radial
spoke head 10 homolog B (RSPH10B), transcript variant X3,
mRNA
Length=3093
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 3 TGCCCGCTCTCCCT 16
||||||||||||||
Sbjct 278 TGCCCGCTCTCCCT 291
> gi|1034654599|ref|XM_011515208.2| PREDICTED: Homo sapiens radial
spoke head 10 homolog B (RSPH10B), transcript variant X5,
mRNA
Length=3438
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 3 TGCCCGCTCTCCCT 16
||||||||||||||
Sbjct 818 TGCCCGCTCTCCCT 831
> gi|1034654598|ref|XM_005249659.3| PREDICTED: Homo sapiens radial
spoke head 10 homolog B (RSPH10B), transcript variant X4,
mRNA
Length=3618
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 3 TGCCCGCTCTCCCT 16
||||||||||||||
Sbjct 818 TGCCCGCTCTCCCT 831
> gi|1034654600|ref|XM_011515209.2| PREDICTED: Homo sapiens radial
spoke head 10 homolog B (RSPH10B), transcript variant X6,
mRNA
Length=3423
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 3 TGCCCGCTCTCCCT 16
||||||||||||||
Sbjct 818 TGCCCGCTCTCCCT 831
> gi|1034654597|ref|XM_011515204.2| PREDICTED: Homo sapiens radial
spoke head 10 homolog B (RSPH10B), transcript variant X2,
mRNA
Length=3401
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 3 TGCCCGCTCTCCCT 16
||||||||||||||
Sbjct 586 TGCCCGCTCTCCCT 599
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 1753414533
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2