BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= CGGGAAGAACATTTACACCAT (evalue = 10)
Length=21
Score E
Sequences producing significant alignments: (Bits) Value
gi|442796430|ref|NM_014062.2| Homo sapiens NIN1/PSMD8 binding p... 42.1 6e-04
gi|442796465|ref|NR_074074.1| Homo sapiens NIN1/PSMD8 binding p... 42.1 6e-04
gi|1034593282|ref|XM_005255760.3| PREDICTED: Homo sapiens cadhe... 30.2 2.3
gi|1034593286|ref|XR_001751812.1| PREDICTED: Homo sapiens cadhe... 30.2 2.3
gi|1034593288|ref|XR_001751814.1| PREDICTED: Homo sapiens cadhe... 30.2 2.3
gi|1034637788|ref|XR_001740943.1| PREDICTED: Homo sapiens uncha... 30.2 2.3
gi|1034637785|ref|XR_924558.2| PREDICTED: Homo sapiens uncharac... 30.2 2.3
gi|1034637787|ref|XR_001740942.1| PREDICTED: Homo sapiens uncha... 30.2 2.3
gi|1034637786|ref|XR_001740941.1| PREDICTED: Homo sapiens uncha... 30.2 2.3
gi|1034557694|ref|XM_017001017.1| PREDICTED: Homo sapiens argon... 30.2 2.3
gi|1034557696|ref|XM_011541236.2| PREDICTED: Homo sapiens argon... 30.2 2.3
gi|1034557692|ref|XM_017001016.1| PREDICTED: Homo sapiens argon... 30.2 2.3
gi|1034557699|ref|XM_017001019.1| PREDICTED: Homo sapiens argon... 30.2 2.3
gi|953480249|ref|NM_001317122.1| Homo sapiens argonaute 1, RISC... 30.2 2.3
gi|953480248|ref|NM_012199.4| Homo sapiens argonaute 1, RISC ca... 30.2 2.3
gi|953480251|ref|NM_001317123.1| Homo sapiens argonaute 1, RISC... 30.2 2.3
gi|1034638424|ref|XM_017007741.1| PREDICTED: Homo sapiens amino... 30.2 2.3
gi|190610009|ref|NM_174978.2| Homo sapiens chromosome 14 open r... 28.2 9.2
gi|1034586929|ref|XM_017021251.1| PREDICTED: Homo sapiens chrom... 28.2 9.2
gi|1034586925|ref|XM_017021249.1| PREDICTED: Homo sapiens chrom... 28.2 9.2
gi|1034586923|ref|XM_017021248.1| PREDICTED: Homo sapiens chrom... 28.2 9.2
gi|1034586920|ref|XM_011536690.2| PREDICTED: Homo sapiens chrom... 28.2 9.2
gi|1034586921|ref|XM_017021247.1| PREDICTED: Homo sapiens chrom... 28.2 9.2
gi|1034586927|ref|XM_017021250.1| PREDICTED: Homo sapiens chrom... 28.2 9.2
gi|1034588224|ref|XM_017021665.1| PREDICTED: Homo sapiens nucle... 28.2 9.2
gi|189491627|ref|NM_031889.2| Homo sapiens enamelin (ENAM), mRNA 28.2 9.2
gi|1034638034|ref|XM_006714056.3| PREDICTED: Homo sapiens ename... 28.2 9.2
gi|1034617608|ref|XM_011512141.2| PREDICTED: Homo sapiens SEC14... 28.2 9.2
gi|1034617609|ref|XR_001739031.1| PREDICTED: Homo sapiens SEC14... 28.2 9.2
gi|1034617612|ref|XR_001739032.1| PREDICTED: Homo sapiens SEC14... 28.2 9.2
gi|1034617605|ref|XM_011512139.2| PREDICTED: Homo sapiens SEC14... 28.2 9.2
gi|1034617606|ref|XM_017005250.1| PREDICTED: Homo sapiens SEC14... 28.2 9.2
gi|1034617610|ref|XM_017005251.1| PREDICTED: Homo sapiens SEC14... 28.2 9.2
gi|188528640|ref|NM_178123.4| Homo sapiens SEC14 and spectrin d... 28.2 9.2
gi|732170696|ref|NR_027295.2| Homo sapiens ADP-ribosylation fac... 28.2 9.2
gi|732170691|ref|NR_026680.3| Homo sapiens ADP-ribosylation fac... 28.2 9.2
> gi|442796430|ref|NM_014062.2| Homo sapiens NIN1/PSMD8 binding
protein 1 homolog (NOB1), transcript variant 1, mRNA
Length=1775
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CGGGAAGAACATTTACACCAT 21
|||||||||||||||||||||
Sbjct 127 CGGGAAGAACATTTACACCAT 147
> gi|442796465|ref|NR_074074.1| Homo sapiens NIN1/PSMD8 binding
protein 1 homolog (NOB1), transcript variant 2, non-coding
RNA
Length=1644
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CGGGAAGAACATTTACACCAT 21
|||||||||||||||||||||
Sbjct 127 CGGGAAGAACATTTACACCAT 147
> gi|1034593282|ref|XM_005255760.3| PREDICTED: Homo sapiens cadherin
8 (CDH8), transcript variant X1, mRNA
Length=10116
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 3 GGAAGAACATTTACA 17
|||||||||||||||
Sbjct 9967 GGAAGAACATTTACA 9981
> gi|1034593286|ref|XR_001751812.1| PREDICTED: Homo sapiens cadherin
8 (CDH8), transcript variant X4, misc_RNA
Length=10224
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 3 GGAAGAACATTTACA 17
|||||||||||||||
Sbjct 10074 GGAAGAACATTTACA 10088
> gi|1034593288|ref|XR_001751814.1| PREDICTED: Homo sapiens cadherin
8 (CDH8), transcript variant X6, misc_RNA
Length=9997
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 3 GGAAGAACATTTACA 17
|||||||||||||||
Sbjct 9845 GGAAGAACATTTACA 9859
> gi|1034637788|ref|XR_001740943.1| PREDICTED: Homo sapiens uncharacterized
LOC105374140 (LOC105374140), transcript variant
X4, ncRNA
Length=9610
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 3 GGAAGAACATTTACA 17
|||||||||||||||
Sbjct 6991 GGAAGAACATTTACA 7005
> gi|1034637785|ref|XR_924558.2| PREDICTED: Homo sapiens uncharacterized
LOC105374140 (LOC105374140), transcript variant X1,
ncRNA
Length=9701
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 3 GGAAGAACATTTACA 17
|||||||||||||||
Sbjct 7082 GGAAGAACATTTACA 7096
> gi|1034637787|ref|XR_001740942.1| PREDICTED: Homo sapiens uncharacterized
LOC105374140 (LOC105374140), transcript variant
X3, ncRNA
Length=14379
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 3 GGAAGAACATTTACA 17
|||||||||||||||
Sbjct 11760 GGAAGAACATTTACA 11774
> gi|1034637786|ref|XR_001740941.1| PREDICTED: Homo sapiens uncharacterized
LOC105374140 (LOC105374140), transcript variant
X2, ncRNA
Length=14164
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 3 GGAAGAACATTTACA 17
|||||||||||||||
Sbjct 11545 GGAAGAACATTTACA 11559
> gi|1034557694|ref|XM_017001017.1| PREDICTED: Homo sapiens argonaute
1, RISC catalytic component (AGO1), transcript variant
X2, mRNA
Length=12813
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 4 GAAGAACATTTACAC 18
|||||||||||||||
Sbjct 473 GAAGAACATTTACAC 487
> gi|1034557696|ref|XM_011541236.2| PREDICTED: Homo sapiens argonaute
1, RISC catalytic component (AGO1), transcript variant
X3, mRNA
Length=12774
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 4 GAAGAACATTTACAC 18
|||||||||||||||
Sbjct 473 GAAGAACATTTACAC 487
> gi|1034557692|ref|XM_017001016.1| PREDICTED: Homo sapiens argonaute
1, RISC catalytic component (AGO1), transcript variant
X1, mRNA
Length=12822
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 4 GAAGAACATTTACAC 18
|||||||||||||||
Sbjct 473 GAAGAACATTTACAC 487
> gi|1034557699|ref|XM_017001019.1| PREDICTED: Homo sapiens argonaute
1, RISC catalytic component (AGO1), transcript variant
X5, mRNA
Length=12862
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 4 GAAGAACATTTACAC 18
|||||||||||||||
Sbjct 488 GAAGAACATTTACAC 502
> gi|953480249|ref|NM_001317122.1| Homo sapiens argonaute 1, RISC
catalytic component (AGO1), transcript variant 1, mRNA
Length=7510
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 4 GAAGAACATTTACAC 18
|||||||||||||||
Sbjct 512 GAAGAACATTTACAC 526
> gi|953480248|ref|NM_012199.4| Homo sapiens argonaute 1, RISC
catalytic component (AGO1), transcript variant 1, mRNA
Length=7510
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 4 GAAGAACATTTACAC 18
|||||||||||||||
Sbjct 512 GAAGAACATTTACAC 526
> gi|953480251|ref|NM_001317123.1| Homo sapiens argonaute 1, RISC
catalytic component (AGO1), transcript variant 2, mRNA
Length=7354
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 4 GAAGAACATTTACAC 18
|||||||||||||||
Sbjct 356 GAAGAACATTTACAC 370
> gi|1034638424|ref|XM_017007741.1| PREDICTED: Homo sapiens aminoadipate-semialdehyde
dehydrogenase (AASDH), transcript variant
X2, mRNA
Length=3680
Score = 30.2 bits (15), Expect = 2.3
Identities = 18/19 (95%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 3 GGAAGAACATTTACACCAT 21
||||||||| |||||||||
Sbjct 593 GGAAGAACACTTACACCAT 575
> gi|190610009|ref|NM_174978.2| Homo sapiens chromosome 14 open
reading frame 39 (C14orf39), mRNA
Length=2779
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GAAGAACATTTACA 17
||||||||||||||
Sbjct 2558 GAAGAACATTTACA 2571
> gi|1034586929|ref|XM_017021251.1| PREDICTED: Homo sapiens chromosome
14 open reading frame 39 (C14orf39), transcript variant
X6, mRNA
Length=2411
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GAAGAACATTTACA 17
||||||||||||||
Sbjct 2204 GAAGAACATTTACA 2217
> gi|1034586925|ref|XM_017021249.1| PREDICTED: Homo sapiens chromosome
14 open reading frame 39 (C14orf39), transcript variant
X4, mRNA
Length=2460
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GAAGAACATTTACA 17
||||||||||||||
Sbjct 2253 GAAGAACATTTACA 2266
> gi|1034586923|ref|XM_017021248.1| PREDICTED: Homo sapiens chromosome
14 open reading frame 39 (C14orf39), transcript variant
X3, mRNA
Length=2728
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GAAGAACATTTACA 17
||||||||||||||
Sbjct 2521 GAAGAACATTTACA 2534
> gi|1034586920|ref|XM_011536690.2| PREDICTED: Homo sapiens chromosome
14 open reading frame 39 (C14orf39), transcript variant
X1, mRNA
Length=2895
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GAAGAACATTTACA 17
||||||||||||||
Sbjct 2688 GAAGAACATTTACA 2701
> gi|1034586921|ref|XM_017021247.1| PREDICTED: Homo sapiens chromosome
14 open reading frame 39 (C14orf39), transcript variant
X2, mRNA
Length=2893
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GAAGAACATTTACA 17
||||||||||||||
Sbjct 2686 GAAGAACATTTACA 2699
> gi|1034586927|ref|XM_017021250.1| PREDICTED: Homo sapiens chromosome
14 open reading frame 39 (C14orf39), transcript variant
X5, mRNA
Length=2810
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 GAAGAACATTTACA 17
||||||||||||||
Sbjct 2603 GAAGAACATTTACA 2616
> gi|1034588224|ref|XM_017021665.1| PREDICTED: Homo sapiens nucleotide
binding protein like (NUBPL), transcript variant X4,
mRNA
Length=3929
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 GGGAAGAACATTTA 15
||||||||||||||
Sbjct 1693 GGGAAGAACATTTA 1706
> gi|189491627|ref|NM_031889.2| Homo sapiens enamelin (ENAM), mRNA
Length=5674
Score = 28.2 bits (14), Expect = 9.2
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 4 GAAGAACATTTACACCAT 21
||||||||||||| ||||
Sbjct 2031 GAAGAACATTTACCCCAT 2048
> gi|1034638034|ref|XM_006714056.3| PREDICTED: Homo sapiens enamelin
(ENAM), transcript variant X1, mRNA
Length=7418
Score = 28.2 bits (14), Expect = 9.2
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 4 GAAGAACATTTACACCAT 21
||||||||||||| ||||
Sbjct 3780 GAAGAACATTTACCCCAT 3797
> gi|1034617608|ref|XM_011512141.2| PREDICTED: Homo sapiens SEC14
and spectrin domain containing 1 (SESTD1), transcript variant
X3, mRNA
Length=9328
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 8 AACATTTACACCAT 21
||||||||||||||
Sbjct 3479 AACATTTACACCAT 3492
> gi|1034617609|ref|XR_001739031.1| PREDICTED: Homo sapiens SEC14
and spectrin domain containing 1 (SESTD1), transcript variant
X4, misc_RNA
Length=9592
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 8 AACATTTACACCAT 21
||||||||||||||
Sbjct 3743 AACATTTACACCAT 3756
> gi|1034617612|ref|XR_001739032.1| PREDICTED: Homo sapiens SEC14
and spectrin domain containing 1 (SESTD1), transcript variant
X6, misc_RNA
Length=9383
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 8 AACATTTACACCAT 21
||||||||||||||
Sbjct 3534 AACATTTACACCAT 3547
> gi|1034617605|ref|XM_011512139.2| PREDICTED: Homo sapiens SEC14
and spectrin domain containing 1 (SESTD1), transcript variant
X1, mRNA
Length=9651
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 8 AACATTTACACCAT 21
||||||||||||||
Sbjct 3802 AACATTTACACCAT 3815
> gi|1034617606|ref|XM_017005250.1| PREDICTED: Homo sapiens SEC14
and spectrin domain containing 1 (SESTD1), transcript variant
X2, mRNA
Length=9477
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 8 AACATTTACACCAT 21
||||||||||||||
Sbjct 3628 AACATTTACACCAT 3641
> gi|1034617610|ref|XM_017005251.1| PREDICTED: Homo sapiens SEC14
and spectrin domain containing 1 (SESTD1), transcript variant
X5, mRNA
Length=9829
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 8 AACATTTACACCAT 21
||||||||||||||
Sbjct 3980 AACATTTACACCAT 3993
> gi|188528640|ref|NM_178123.4| Homo sapiens SEC14 and spectrin
domain containing 1 (SESTD1), mRNA
Length=10448
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 8 AACATTTACACCAT 21
||||||||||||||
Sbjct 3774 AACATTTACACCAT 3787
> gi|732170696|ref|NR_027295.2| Homo sapiens ADP-ribosylation factor
pseudogene (MGC57346), transcript variant 2, non-coding
RNA
Length=2621
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 GGGAAGAACATTTA 15
||||||||||||||
Sbjct 2260 GGGAAGAACATTTA 2247
> gi|732170691|ref|NR_026680.3| Homo sapiens ADP-ribosylation factor
pseudogene (MGC57346), transcript variant 1, non-coding
RNA
Length=2127
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 GGGAAGAACATTTA 15
||||||||||||||
Sbjct 1766 GGGAAGAACATTTA 1753
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 2921475425
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2