BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= CGGCATTGTCACCAACTG (evalue = 10)
Length=18
Score E
Sequences producing significant alignments: (Bits) Value
gi|1034674032|ref|XM_017029429.1| PREDICTED: Homo sapiens glyci... 32.2 0.35
gi|169646727|ref|NM_001118886.1| Homo sapiens glycine receptor ... 32.2 0.35
gi|169646714|ref|NM_002063.3| Homo sapiens glycine receptor alp... 32.2 0.35
gi|1034689514|ref|XR_933642.2| PREDICTED: Homo sapiens uncharac... 30.2 1.4
gi|1034646640|ref|XM_011534687.2| PREDICTED: Homo sapiens unc-5... 30.2 1.4
gi|1034632919|ref|XR_001740134.1| PREDICTED: Homo sapiens gluta... 30.2 1.4
gi|1034632922|ref|XR_001740137.1| PREDICTED: Homo sapiens gluta... 30.2 1.4
gi|1034618508|ref|XR_923963.2| PREDICTED: Homo sapiens uncharac... 30.2 1.4
gi|1034694650|ref|XR_001757618.1| PREDICTED: Homo sapiens uncha... 28.2 5.5
gi|1034588324|ref|XM_011537229.2| PREDICTED: Homo sapiens synap... 28.2 5.5
gi|1034588317|ref|XM_011537227.2| PREDICTED: Homo sapiens synap... 28.2 5.5
gi|1034588316|ref|XM_011537225.2| PREDICTED: Homo sapiens synap... 28.2 5.5
gi|1034588304|ref|XM_006720272.3| PREDICTED: Homo sapiens synap... 28.2 5.5
gi|1034588312|ref|XM_011537222.2| PREDICTED: Homo sapiens synap... 28.2 5.5
gi|1034588322|ref|XM_017021697.1| PREDICTED: Homo sapiens synap... 28.2 5.5
gi|1034588309|ref|XM_017021695.1| PREDICTED: Homo sapiens synap... 28.2 5.5
gi|1034588315|ref|XM_011537224.2| PREDICTED: Homo sapiens synap... 28.2 5.5
gi|1034588319|ref|XM_011537228.2| PREDICTED: Homo sapiens synap... 28.2 5.5
gi|1034588307|ref|XM_017021694.1| PREDICTED: Homo sapiens synap... 28.2 5.5
gi|1034588320|ref|XM_017021696.1| PREDICTED: Homo sapiens synap... 28.2 5.5
gi|1034588314|ref|XM_011537223.2| PREDICTED: Homo sapiens synap... 28.2 5.5
gi|1034588325|ref|XM_017021698.1| PREDICTED: Homo sapiens synap... 28.2 5.5
gi|296923770|ref|NM_001184976.1| Homo sapiens NCK associated pr... 28.2 5.5
gi|153792638|ref|NM_005337.4| Homo sapiens NCK associated prote... 28.2 5.5
gi|168480144|ref|NM_001101.3| Homo sapiens actin, beta (ACTB), ... 28.2 5.5
gi|1034653363|ref|XR_001744273.1| PREDICTED: Homo sapiens uncha... 28.2 5.5
> gi|1034674032|ref|XM_017029429.1| PREDICTED: Homo sapiens glycine
receptor alpha 2 (GLRA2), transcript variant X6, mRNA
Length=2174
Score = 32.2 bits (16), Expect = 0.35
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 2 GGCATTGTCACCAACT 17
||||||||||||||||
Sbjct 185 GGCATTGTCACCAACT 200
> gi|169646727|ref|NM_001118886.1| Homo sapiens glycine receptor
alpha 2 (GLRA2), transcript variant 3, mRNA
Length=3458
Score = 32.2 bits (16), Expect = 0.35
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 2 GGCATTGTCACCAACT 17
||||||||||||||||
Sbjct 428 GGCATTGTCACCAACT 443
> gi|169646714|ref|NM_002063.3| Homo sapiens glycine receptor alpha
2 (GLRA2), transcript variant 1, mRNA
Length=3458
Score = 32.2 bits (16), Expect = 0.35
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 2 GGCATTGTCACCAACT 17
||||||||||||||||
Sbjct 428 GGCATTGTCACCAACT 443
> gi|1034689514|ref|XR_933642.2| PREDICTED: Homo sapiens uncharacterized
LOC105373915 (LOC105373915), ncRNA
Length=1798
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 CATTGTCACCAACTG 18
|||||||||||||||
Sbjct 905 CATTGTCACCAACTG 891
> gi|1034646640|ref|XM_011534687.2| PREDICTED: Homo sapiens unc-5
netrin receptor A (UNC5A), transcript variant X4, mRNA
Length=4112
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 2 GGCATTGTCACCAAC 16
|||||||||||||||
Sbjct 3146 GGCATTGTCACCAAC 3160
> gi|1034632919|ref|XR_001740134.1| PREDICTED: Homo sapiens glutamate
metabotropic receptor 7 (GRM7), transcript variant X1,
misc_RNA
Length=10945
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 CATTGTCACCAACTG 18
|||||||||||||||
Sbjct 8987 CATTGTCACCAACTG 8973
> gi|1034632922|ref|XR_001740137.1| PREDICTED: Homo sapiens glutamate
metabotropic receptor 7 (GRM7), transcript variant X4,
misc_RNA
Length=10969
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 CATTGTCACCAACTG 18
|||||||||||||||
Sbjct 9011 CATTGTCACCAACTG 8997
> gi|1034618508|ref|XR_923963.2| PREDICTED: Homo sapiens uncharacterized
LOC105373915 (LOC105373915), ncRNA
Length=1798
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 CATTGTCACCAACTG 18
|||||||||||||||
Sbjct 905 CATTGTCACCAACTG 891
> gi|1034694650|ref|XR_001757618.1| PREDICTED: Homo sapiens uncharacterized
LOC105377918 (LOC105377918), transcript variant
X3, ncRNA
Length=2066
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 ATTGTCACCAACTG 18
||||||||||||||
Sbjct 1797 ATTGTCACCAACTG 1810
> gi|1034588324|ref|XM_011537229.2| PREDICTED: Homo sapiens synaptotagmin
16 (SYT16), transcript variant X17, mRNA
Length=13162
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 CATTGTCACCAACT 17
||||||||||||||
Sbjct 5930 CATTGTCACCAACT 5917
> gi|1034588317|ref|XM_011537227.2| PREDICTED: Homo sapiens synaptotagmin
16 (SYT16), transcript variant X13, mRNA
Length=13375
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 CATTGTCACCAACT 17
||||||||||||||
Sbjct 6143 CATTGTCACCAACT 6130
> gi|1034588316|ref|XM_011537225.2| PREDICTED: Homo sapiens synaptotagmin
16 (SYT16), transcript variant X12, mRNA
Length=13997
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 CATTGTCACCAACT 17
||||||||||||||
Sbjct 6765 CATTGTCACCAACT 6752
> gi|1034588304|ref|XM_006720272.3| PREDICTED: Homo sapiens synaptotagmin
16 (SYT16), transcript variant X1, mRNA
Length=14438
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 CATTGTCACCAACT 17
||||||||||||||
Sbjct 7206 CATTGTCACCAACT 7193
> gi|1034588312|ref|XM_011537222.2| PREDICTED: Homo sapiens synaptotagmin
16 (SYT16), transcript variant X8, mRNA
Length=14346
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 CATTGTCACCAACT 17
||||||||||||||
Sbjct 7114 CATTGTCACCAACT 7101
> gi|1034588322|ref|XM_017021697.1| PREDICTED: Homo sapiens synaptotagmin
16 (SYT16), transcript variant X16, mRNA
Length=13336
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 CATTGTCACCAACT 17
||||||||||||||
Sbjct 6104 CATTGTCACCAACT 6091
> gi|1034588309|ref|XM_017021695.1| PREDICTED: Homo sapiens synaptotagmin
16 (SYT16), transcript variant X5, mRNA
Length=14349
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 CATTGTCACCAACT 17
||||||||||||||
Sbjct 7117 CATTGTCACCAACT 7104
> gi|1034588315|ref|XM_011537224.2| PREDICTED: Homo sapiens synaptotagmin
16 (SYT16), transcript variant X11, mRNA
Length=13698
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 CATTGTCACCAACT 17
||||||||||||||
Sbjct 6466 CATTGTCACCAACT 6453
> gi|1034588319|ref|XM_011537228.2| PREDICTED: Homo sapiens synaptotagmin
16 (SYT16), transcript variant X14, mRNA
Length=13318
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 CATTGTCACCAACT 17
||||||||||||||
Sbjct 6086 CATTGTCACCAACT 6073
> gi|1034588307|ref|XM_017021694.1| PREDICTED: Homo sapiens synaptotagmin
16 (SYT16), transcript variant X4, mRNA
Length=14204
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 CATTGTCACCAACT 17
||||||||||||||
Sbjct 6972 CATTGTCACCAACT 6959
> gi|1034588320|ref|XM_017021696.1| PREDICTED: Homo sapiens synaptotagmin
16 (SYT16), transcript variant X15, mRNA
Length=13497
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 CATTGTCACCAACT 17
||||||||||||||
Sbjct 6265 CATTGTCACCAACT 6252
> gi|1034588314|ref|XM_011537223.2| PREDICTED: Homo sapiens synaptotagmin
16 (SYT16), transcript variant X10, mRNA
Length=13552
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 CATTGTCACCAACT 17
||||||||||||||
Sbjct 6320 CATTGTCACCAACT 6307
> gi|1034588325|ref|XM_017021698.1| PREDICTED: Homo sapiens synaptotagmin
16 (SYT16), transcript variant X18, mRNA
Length=13621
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 CATTGTCACCAACT 17
||||||||||||||
Sbjct 6389 CATTGTCACCAACT 6376
> gi|296923770|ref|NM_001184976.1| Homo sapiens NCK associated
protein 1 like (NCKAP1L), transcript variant 2, mRNA
Length=3780
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 3 GCATTGTCACCAAC 16
||||||||||||||
Sbjct 1962 GCATTGTCACCAAC 1975
> gi|153792638|ref|NM_005337.4| Homo sapiens NCK associated protein
1 like (NCKAP1L), transcript variant 1, mRNA
Length=3909
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 3 GCATTGTCACCAAC 16
||||||||||||||
Sbjct 2091 GCATTGTCACCAAC 2104
> gi|168480144|ref|NM_001101.3| Homo sapiens actin, beta (ACTB),
mRNA
Length=1852
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 1 CGGCATTGTCACCAACTG 18
|||||| |||||||||||
Sbjct 303 CGGCATCGTCACCAACTG 320
> gi|1034653363|ref|XR_001744273.1| PREDICTED: Homo sapiens uncharacterized
LOC105377918 (LOC105377918), transcript variant
X3, ncRNA
Length=2066
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 ATTGTCACCAACTG 18
||||||||||||||
Sbjct 1797 ATTGTCACCAACTG 1810
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 1753414533
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2