BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= CGCTCGGTCAGGATCTTC (evalue = 10)
Length=18
Score E
Sequences producing significant alignments: (Bits) Value
gi|1034689602|ref|XM_017012144.1| PREDICTED: Homo sapiens POTE ... 28.2 5.5
gi|1034689604|ref|XM_017012145.1| PREDICTED: Homo sapiens POTE ... 28.2 5.5
gi|1034689606|ref|XM_017012146.1| PREDICTED: Homo sapiens POTE ... 28.2 5.5
gi|1034603986|ref|XM_011525973.2| PREDICTED: Homo sapiens ATPas... 28.2 5.5
gi|1034603983|ref|XM_011525971.2| PREDICTED: Homo sapiens ATPas... 28.2 5.5
gi|1034603987|ref|XM_011525974.2| PREDICTED: Homo sapiens ATPas... 28.2 5.5
gi|1034603985|ref|XM_011525972.2| PREDICTED: Homo sapiens ATPas... 28.2 5.5
gi|1034603999|ref|XR_001753197.1| PREDICTED: Homo sapiens ATPas... 28.2 5.5
gi|1034603996|ref|XR_001753196.1| PREDICTED: Homo sapiens ATPas... 28.2 5.5
gi|1034603992|ref|XM_017025740.1| PREDICTED: Homo sapiens ATPas... 28.2 5.5
gi|1034603988|ref|XM_017025738.1| PREDICTED: Homo sapiens ATPas... 28.2 5.5
gi|1034603994|ref|XM_017025741.1| PREDICTED: Homo sapiens ATPas... 28.2 5.5
gi|1034603990|ref|XM_017025739.1| PREDICTED: Homo sapiens ATPas... 28.2 5.5
gi|1034603964|ref|XM_011525966.2| PREDICTED: Homo sapiens ATPas... 28.2 5.5
gi|1034603982|ref|XR_001753195.1| PREDICTED: Homo sapiens ATPas... 28.2 5.5
gi|1034604000|ref|XR_001753198.1| PREDICTED: Homo sapiens ATPas... 28.2 5.5
gi|1034603952|ref|XM_011525964.2| PREDICTED: Homo sapiens ATPas... 28.2 5.5
gi|1034603975|ref|XR_001753192.1| PREDICTED: Homo sapiens ATPas... 28.2 5.5
gi|1034603959|ref|XM_017025729.1| PREDICTED: Homo sapiens ATPas... 28.2 5.5
gi|1034603953|ref|XM_017025726.1| PREDICTED: Homo sapiens ATPas... 28.2 5.5
gi|1034603963|ref|XM_011525965.2| PREDICTED: Homo sapiens ATPas... 28.2 5.5
gi|1034603969|ref|XM_017025733.1| PREDICTED: Homo sapiens ATPas... 28.2 5.5
gi|1034603967|ref|XM_017025732.1| PREDICTED: Homo sapiens ATPas... 28.2 5.5
gi|1034603961|ref|XM_017025730.1| PREDICTED: Homo sapiens ATPas... 28.2 5.5
gi|1034603957|ref|XM_017025728.1| PREDICTED: Homo sapiens ATPas... 28.2 5.5
gi|1034603965|ref|XM_017025731.1| PREDICTED: Homo sapiens ATPas... 28.2 5.5
gi|1034603979|ref|XR_001753194.1| PREDICTED: Homo sapiens ATPas... 28.2 5.5
gi|1034603978|ref|XR_001753193.1| PREDICTED: Homo sapiens ATPas... 28.2 5.5
gi|1034603955|ref|XM_017025727.1| PREDICTED: Homo sapiens ATPas... 28.2 5.5
gi|1034603951|ref|XM_011525963.2| PREDICTED: Homo sapiens ATPas... 28.2 5.5
gi|807045836|ref|NM_001306085.1| Homo sapiens ATPase phospholip... 28.2 5.5
gi|807045847|ref|NM_198531.4| Homo sapiens ATPase phospholipid ... 28.2 5.5
gi|224282146|ref|NM_001145442.1| Homo sapiens POTE ankyrin doma... 28.2 5.5
gi|213688378|ref|NM_001613.2| Homo sapiens actin, alpha 2, smoo... 28.2 5.5
gi|1003701538|ref|NM_001141945.2| Homo sapiens actin, alpha 2, ... 28.2 5.5
gi|1003701536|ref|NM_001320855.1| Homo sapiens actin, alpha 2, ... 28.2 5.5
gi|168480144|ref|NM_001101.3| Homo sapiens actin, beta (ACTB), ... 28.2 5.5
gi|393290851|ref|NM_001017992.3| Homo sapiens actin, beta-like ... 28.2 5.5
gi|1034614130|ref|XM_017004160.1| PREDICTED: Homo sapiens POTE ... 28.2 5.5
gi|134133225|ref|NM_001083538.1| Homo sapiens POTE ankyrin doma... 28.2 5.5
gi|1034614129|ref|XM_011511216.2| PREDICTED: Homo sapiens POTE ... 28.2 5.5
gi|1034614127|ref|XM_017004159.1| PREDICTED: Homo sapiens POTE ... 28.2 5.5
gi|1034614132|ref|XM_017004161.1| PREDICTED: Homo sapiens POTE ... 28.2 5.5
gi|1034616020|ref|XM_017004743.1| PREDICTED: Homo sapiens POTE ... 28.2 5.5
gi|1034616018|ref|XM_017004742.1| PREDICTED: Homo sapiens POTE ... 28.2 5.5
gi|459352729|ref|NM_001277083.1| Homo sapiens POTE ankyrin doma... 28.2 5.5
gi|1034616015|ref|XM_011511683.2| PREDICTED: Homo sapiens POTE ... 28.2 5.5
gi|1034616016|ref|XM_017004741.1| PREDICTED: Homo sapiens POTE ... 28.2 5.5
gi|475808426|ref|NM_001277406.1| Homo sapiens POTE ankyrin doma... 28.2 5.5
gi|1034615986|ref|XM_017004734.1| PREDICTED: Homo sapiens POTE ... 28.2 5.5
gi|1034615984|ref|XM_017004733.1| PREDICTED: Homo sapiens POTE ... 28.2 5.5
gi|1034615981|ref|XM_011511670.2| PREDICTED: Homo sapiens POTE ... 28.2 5.5
gi|1034615982|ref|XM_017004732.1| PREDICTED: Homo sapiens POTE ... 28.2 5.5
gi|1034615988|ref|XM_017004735.1| PREDICTED: Homo sapiens POTE ... 28.2 5.5
gi|425876801|ref|NR_027247.2| Homo sapiens POTE ankyrin domain ... 28.2 5.5
> gi|1034689602|ref|XM_017012144.1| PREDICTED: Homo sapiens POTE
ankyrin domain family member I (POTEI), transcript variant
X6, mRNA
Length=2583
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 CGCTCGGTCAGGATCTTC 18
|||||||| |||||||||
Sbjct 1471 CGCTCGGTGAGGATCTTC 1454
> gi|1034689604|ref|XM_017012145.1| PREDICTED: Homo sapiens POTE
ankyrin domain family member I (POTEI), transcript variant
X4, mRNA
Length=2672
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 CGCTCGGTCAGGATCTTC 18
|||||||| |||||||||
Sbjct 1560 CGCTCGGTGAGGATCTTC 1543
> gi|1034689606|ref|XM_017012146.1| PREDICTED: Homo sapiens POTE
ankyrin domain family member I (POTEI), transcript variant
X5, mRNA
Length=1584
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 CGCTCGGTCAGGATCTTC 18
|||||||| |||||||||
Sbjct 472 CGCTCGGTGAGGATCTTC 455
> gi|1034603986|ref|XM_011525973.2| PREDICTED: Homo sapiens ATPase
phospholipid transporting 9B (putative) (ATP9B), transcript
variant X23, mRNA
Length=3681
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 GCTCGGTCAGGATC 15
||||||||||||||
Sbjct 2392 GCTCGGTCAGGATC 2379
> gi|1034603983|ref|XM_011525971.2| PREDICTED: Homo sapiens ATPase
phospholipid transporting 9B (putative) (ATP9B), transcript
variant X21, mRNA
Length=6890
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 GCTCGGTCAGGATC 15
||||||||||||||
Sbjct 5601 GCTCGGTCAGGATC 5588
> gi|1034603987|ref|XM_011525974.2| PREDICTED: Homo sapiens ATPase
phospholipid transporting 9B (putative) (ATP9B), transcript
variant X24, mRNA
Length=3703
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 GCTCGGTCAGGATC 15
||||||||||||||
Sbjct 2414 GCTCGGTCAGGATC 2401
> gi|1034603985|ref|XM_011525972.2| PREDICTED: Homo sapiens ATPase
phospholipid transporting 9B (putative) (ATP9B), transcript
variant X22, mRNA
Length=3907
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 GCTCGGTCAGGATC 15
||||||||||||||
Sbjct 2618 GCTCGGTCAGGATC 2605
> gi|1034603999|ref|XR_001753197.1| PREDICTED: Homo sapiens ATPase
phospholipid transporting 9B (putative) (ATP9B), transcript
variant X31, misc_RNA
Length=3600
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 GCTCGGTCAGGATC 15
||||||||||||||
Sbjct 3055 GCTCGGTCAGGATC 3042
> gi|1034603996|ref|XR_001753196.1| PREDICTED: Homo sapiens ATPase
phospholipid transporting 9B (putative) (ATP9B), transcript
variant X29, misc_RNA
Length=3751
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 GCTCGGTCAGGATC 15
||||||||||||||
Sbjct 2710 GCTCGGTCAGGATC 2697
> gi|1034603992|ref|XM_017025740.1| PREDICTED: Homo sapiens ATPase
phospholipid transporting 9B (putative) (ATP9B), transcript
variant X27, mRNA
Length=3987
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 GCTCGGTCAGGATC 15
||||||||||||||
Sbjct 2698 GCTCGGTCAGGATC 2685
> gi|1034603988|ref|XM_017025738.1| PREDICTED: Homo sapiens ATPase
phospholipid transporting 9B (putative) (ATP9B), transcript
variant X25, mRNA
Length=4064
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 GCTCGGTCAGGATC 15
||||||||||||||
Sbjct 2775 GCTCGGTCAGGATC 2762
> gi|1034603994|ref|XM_017025741.1| PREDICTED: Homo sapiens ATPase
phospholipid transporting 9B (putative) (ATP9B), transcript
variant X28, mRNA
Length=4327
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 GCTCGGTCAGGATC 15
||||||||||||||
Sbjct 3038 GCTCGGTCAGGATC 3025
> gi|1034603990|ref|XM_017025739.1| PREDICTED: Homo sapiens ATPase
phospholipid transporting 9B (putative) (ATP9B), transcript
variant X26, mRNA
Length=4082
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 GCTCGGTCAGGATC 15
||||||||||||||
Sbjct 2793 GCTCGGTCAGGATC 2780
> gi|1034603964|ref|XM_011525966.2| PREDICTED: Homo sapiens ATPase
phospholipid transporting 9B (putative) (ATP9B), transcript
variant X9, mRNA
Length=4783
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 GCTCGGTCAGGATC 15
||||||||||||||
Sbjct 3494 GCTCGGTCAGGATC 3481
> gi|1034603982|ref|XR_001753195.1| PREDICTED: Homo sapiens ATPase
phospholipid transporting 9B (putative) (ATP9B), transcript
variant X20, misc_RNA
Length=3828
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 GCTCGGTCAGGATC 15
||||||||||||||
Sbjct 3122 GCTCGGTCAGGATC 3109
> gi|1034604000|ref|XR_001753198.1| PREDICTED: Homo sapiens ATPase
phospholipid transporting 9B (putative) (ATP9B), transcript
variant X32, misc_RNA
Length=3785
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 GCTCGGTCAGGATC 15
||||||||||||||
Sbjct 3038 GCTCGGTCAGGATC 3025
> gi|1034603952|ref|XM_011525964.2| PREDICTED: Homo sapiens ATPase
phospholipid transporting 9B (putative) (ATP9B), transcript
variant X2, mRNA
Length=4547
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 GCTCGGTCAGGATC 15
||||||||||||||
Sbjct 3258 GCTCGGTCAGGATC 3245
> gi|1034603975|ref|XR_001753192.1| PREDICTED: Homo sapiens ATPase
phospholipid transporting 9B (putative) (ATP9B), transcript
variant X15, misc_RNA
Length=3629
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 GCTCGGTCAGGATC 15
||||||||||||||
Sbjct 3485 GCTCGGTCAGGATC 3472
> gi|1034603959|ref|XM_017025729.1| PREDICTED: Homo sapiens ATPase
phospholipid transporting 9B (putative) (ATP9B), transcript
variant X6, mRNA
Length=3928
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 GCTCGGTCAGGATC 15
||||||||||||||
Sbjct 3543 GCTCGGTCAGGATC 3530
> gi|1034603953|ref|XM_017025726.1| PREDICTED: Homo sapiens ATPase
phospholipid transporting 9B (putative) (ATP9B), transcript
variant X3, mRNA
Length=3898
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 GCTCGGTCAGGATC 15
||||||||||||||
Sbjct 3543 GCTCGGTCAGGATC 3530
> gi|1034603963|ref|XM_011525965.2| PREDICTED: Homo sapiens ATPase
phospholipid transporting 9B (putative) (ATP9B), transcript
variant X8, mRNA
Length=4828
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 GCTCGGTCAGGATC 15
||||||||||||||
Sbjct 3539 GCTCGGTCAGGATC 3526
> gi|1034603969|ref|XM_017025733.1| PREDICTED: Homo sapiens ATPase
phospholipid transporting 9B (putative) (ATP9B), transcript
variant X12, mRNA
Length=4598
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 GCTCGGTCAGGATC 15
||||||||||||||
Sbjct 3342 GCTCGGTCAGGATC 3329
> gi|1034603967|ref|XM_017025732.1| PREDICTED: Homo sapiens ATPase
phospholipid transporting 9B (putative) (ATP9B), transcript
variant X11, mRNA
Length=4631
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 GCTCGGTCAGGATC 15
||||||||||||||
Sbjct 3342 GCTCGGTCAGGATC 3329
> gi|1034603961|ref|XM_017025730.1| PREDICTED: Homo sapiens ATPase
phospholipid transporting 9B (putative) (ATP9B), transcript
variant X7, mRNA
Length=4721
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 GCTCGGTCAGGATC 15
||||||||||||||
Sbjct 3465 GCTCGGTCAGGATC 3452
> gi|1034603957|ref|XM_017025728.1| PREDICTED: Homo sapiens ATPase
phospholipid transporting 9B (putative) (ATP9B), transcript
variant X5, mRNA
Length=4754
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 GCTCGGTCAGGATC 15
||||||||||||||
Sbjct 3465 GCTCGGTCAGGATC 3452
> gi|1034603965|ref|XM_017025731.1| PREDICTED: Homo sapiens ATPase
phospholipid transporting 9B (putative) (ATP9B), transcript
variant X10, mRNA
Length=4709
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 GCTCGGTCAGGATC 15
||||||||||||||
Sbjct 3420 GCTCGGTCAGGATC 3407
> gi|1034603979|ref|XR_001753194.1| PREDICTED: Homo sapiens ATPase
phospholipid transporting 9B (putative) (ATP9B), transcript
variant X18, misc_RNA
Length=4734
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 GCTCGGTCAGGATC 15
||||||||||||||
Sbjct 3478 GCTCGGTCAGGATC 3465
> gi|1034603978|ref|XR_001753193.1| PREDICTED: Homo sapiens ATPase
phospholipid transporting 9B (putative) (ATP9B), transcript
variant X17, misc_RNA
Length=4767
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 GCTCGGTCAGGATC 15
||||||||||||||
Sbjct 3478 GCTCGGTCAGGATC 3465
> gi|1034603955|ref|XM_017025727.1| PREDICTED: Homo sapiens ATPase
phospholipid transporting 9B (putative) (ATP9B), transcript
variant X4, mRNA
Length=4799
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 GCTCGGTCAGGATC 15
||||||||||||||
Sbjct 3543 GCTCGGTCAGGATC 3530
> gi|1034603951|ref|XM_011525963.2| PREDICTED: Homo sapiens ATPase
phospholipid transporting 9B (putative) (ATP9B), transcript
variant X1, mRNA
Length=4832
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 GCTCGGTCAGGATC 15
||||||||||||||
Sbjct 3543 GCTCGGTCAGGATC 3530
> gi|807045836|ref|NM_001306085.1| Homo sapiens ATPase phospholipid
transporting 9B (putative) (ATP9B), transcript variant
2, mRNA
Length=4467
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 GCTCGGTCAGGATC 15
||||||||||||||
Sbjct 3299 GCTCGGTCAGGATC 3286
> gi|807045847|ref|NM_198531.4| Homo sapiens ATPase phospholipid
transporting 9B (putative) (ATP9B), transcript variant 1,
mRNA
Length=4500
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 GCTCGGTCAGGATC 15
||||||||||||||
Sbjct 3299 GCTCGGTCAGGATC 3286
> gi|224282146|ref|NM_001145442.1| Homo sapiens POTE ankyrin domain
family member M (POTEM), mRNA
Length=6666
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 CGCTCGGTCAGGATCTTC 18
|||||||| |||||||||
Sbjct 2368 CGCTCGGTGAGGATCTTC 2351
> gi|213688378|ref|NM_001613.2| Homo sapiens actin, alpha 2, smooth
muscle, aorta (ACTA2), transcript variant 2, mRNA
Length=1415
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 CGCTCGGTCAGGATCTTC 18
||||| ||||||||||||
Sbjct 709 CGCTCAGTCAGGATCTTC 692
> gi|1003701538|ref|NM_001141945.2| Homo sapiens actin, alpha 2,
smooth muscle, aorta (ACTA2), transcript variant 1, mRNA
Length=1805
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 CGCTCGGTCAGGATCTTC 18
||||| ||||||||||||
Sbjct 1075 CGCTCAGTCAGGATCTTC 1058
> gi|1003701536|ref|NM_001320855.1| Homo sapiens actin, alpha 2,
smooth muscle, aorta (ACTA2), transcript variant 3, mRNA
Length=1722
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 CGCTCGGTCAGGATCTTC 18
||||| ||||||||||||
Sbjct 992 CGCTCAGTCAGGATCTTC 975
> gi|168480144|ref|NM_001101.3| Homo sapiens actin, beta (ACTB),
mRNA
Length=1852
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 CGCTCGGTCAGGATCTTC 18
|||||||| |||||||||
Sbjct 671 CGCTCGGTGAGGATCTTC 654
> gi|393290851|ref|NM_001017992.3| Homo sapiens actin, beta-like
2 (ACTBL2), mRNA
Length=2812
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 CGCTCGGTCAGGATCTTC 18
||||| ||||||||||||
Sbjct 692 CGCTCTGTCAGGATCTTC 675
> gi|1034614130|ref|XM_017004160.1| PREDICTED: Homo sapiens POTE
ankyrin domain family member E (POTEE), transcript variant
X3, mRNA
Length=2574
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 CGCTCGGTCAGGATCTTC 18
|||||||| |||||||||
Sbjct 1462 CGCTCGGTGAGGATCTTC 1445
> gi|134133225|ref|NM_001083538.1| Homo sapiens POTE ankyrin domain
family member E (POTEE), mRNA
Length=3440
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 CGCTCGGTCAGGATCTTC 18
|||||||| |||||||||
Sbjct 2739 CGCTCGGTGAGGATCTTC 2722
> gi|1034614129|ref|XM_011511216.2| PREDICTED: Homo sapiens POTE
ankyrin domain family member E (POTEE), transcript variant
X2, mRNA
Length=3575
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 CGCTCGGTCAGGATCTTC 18
|||||||| |||||||||
Sbjct 2463 CGCTCGGTGAGGATCTTC 2446
> gi|1034614127|ref|XM_017004159.1| PREDICTED: Homo sapiens POTE
ankyrin domain family member E (POTEE), transcript variant
X1, mRNA
Length=3606
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 CGCTCGGTCAGGATCTTC 18
|||||||| |||||||||
Sbjct 2494 CGCTCGGTGAGGATCTTC 2477
> gi|1034614132|ref|XM_017004161.1| PREDICTED: Homo sapiens POTE
ankyrin domain family member E (POTEE), transcript variant
X4, mRNA
Length=4288
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 CGCTCGGTCAGGATCTTC 18
|||||||| |||||||||
Sbjct 3176 CGCTCGGTGAGGATCTTC 3159
> gi|1034616020|ref|XM_017004743.1| PREDICTED: Homo sapiens POTE
ankyrin domain family member J (POTEJ), transcript variant
X4, mRNA
Length=2628
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 CGCTCGGTCAGGATCTTC 18
|||||||| |||||||||
Sbjct 1516 CGCTCGGTGAGGATCTTC 1499
> gi|1034616018|ref|XM_017004742.1| PREDICTED: Homo sapiens POTE
ankyrin domain family member J (POTEJ), transcript variant
X3, mRNA
Length=2696
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 CGCTCGGTCAGGATCTTC 18
|||||||| |||||||||
Sbjct 1584 CGCTCGGTGAGGATCTTC 1567
> gi|459352729|ref|NM_001277083.1| Homo sapiens POTE ankyrin domain
family member J (POTEJ), mRNA
Length=3277
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 CGCTCGGTCAGGATCTTC 18
|||||||| |||||||||
Sbjct 2576 CGCTCGGTGAGGATCTTC 2559
> gi|1034616015|ref|XM_011511683.2| PREDICTED: Homo sapiens POTE
ankyrin domain family member J (POTEJ), transcript variant
X1, mRNA
Length=3860
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 CGCTCGGTCAGGATCTTC 18
|||||||| |||||||||
Sbjct 2748 CGCTCGGTGAGGATCTTC 2731
> gi|1034616016|ref|XM_017004741.1| PREDICTED: Homo sapiens POTE
ankyrin domain family member J (POTEJ), transcript variant
X2, mRNA
Length=3833
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 CGCTCGGTCAGGATCTTC 18
|||||||| |||||||||
Sbjct 2721 CGCTCGGTGAGGATCTTC 2704
> gi|475808426|ref|NM_001277406.1| Homo sapiens POTE ankyrin domain
family member I (POTEI), mRNA
Length=3228
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 CGCTCGGTCAGGATCTTC 18
|||||||| |||||||||
Sbjct 2687 CGCTCGGTGAGGATCTTC 2670
> gi|1034615986|ref|XM_017004734.1| PREDICTED: Homo sapiens POTE
ankyrin domain family member I (POTEI), transcript variant
X4, mRNA
Length=2633
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 CGCTCGGTCAGGATCTTC 18
|||||||| |||||||||
Sbjct 1521 CGCTCGGTGAGGATCTTC 1504
> gi|1034615984|ref|XM_017004733.1| PREDICTED: Homo sapiens POTE
ankyrin domain family member I (POTEI), transcript variant
X3, mRNA
Length=2696
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 CGCTCGGTCAGGATCTTC 18
|||||||| |||||||||
Sbjct 1584 CGCTCGGTGAGGATCTTC 1567
> gi|1034615981|ref|XM_011511670.2| PREDICTED: Homo sapiens POTE
ankyrin domain family member I (POTEI), transcript variant
X1, mRNA
Length=3971
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 CGCTCGGTCAGGATCTTC 18
|||||||| |||||||||
Sbjct 2859 CGCTCGGTGAGGATCTTC 2842
> gi|1034615982|ref|XM_017004732.1| PREDICTED: Homo sapiens POTE
ankyrin domain family member I (POTEI), transcript variant
X2, mRNA
Length=3950
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 CGCTCGGTCAGGATCTTC 18
|||||||| |||||||||
Sbjct 2838 CGCTCGGTGAGGATCTTC 2821
> gi|1034615988|ref|XM_017004735.1| PREDICTED: Homo sapiens POTE
ankyrin domain family member I (POTEI), transcript variant
X5, mRNA
Length=1593
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 CGCTCGGTCAGGATCTTC 18
|||||||| |||||||||
Sbjct 481 CGCTCGGTGAGGATCTTC 464
> gi|425876801|ref|NR_027247.2| Homo sapiens POTE ankyrin domain
family, member F pseudogene (LOC100130331), non-coding RNA
Length=3148
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 CGCTCGGTCAGGATCTTC 18
|||||||| |||||||||
Sbjct 2228 CGCTCGGTGAGGATCTTC 2211
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 1753414533
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2