BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= CGAAGTGGTTCTGGAAACTTTCTCGAGAAAGTTTCCAGAACCACTTCGTTTTT (evalue = 10)
Length=53
Score E
Sequences producing significant alignments: (Bits) Value
gi|115529279|ref|NR_002944.2| Homo sapiens heterogeneous nuclea... 42.1 0.004
gi|1034579321|ref|XM_017019251.1| PREDICTED: Homo sapiens heter... 42.1 0.004
gi|530400150|ref|XR_245923.1| PREDICTED: Homo sapiens heterogen... 42.1 0.004
gi|530400151|ref|XM_005268826.1| PREDICTED: Homo sapiens hetero... 42.1 0.004
gi|994318938|ref|NM_002136.3| Homo sapiens heterogeneous nuclea... 42.1 0.004
gi|994318937|ref|NM_031157.3| Homo sapiens heterogeneous nuclea... 42.1 0.004
gi|994321657|ref|NR_135167.1| Homo sapiens heterogeneous nuclea... 42.1 0.004
gi|119943148|ref|NR_003277.1| Homo sapiens heterogeneous nuclea... 42.1 0.004
gi|1034674303|ref|XM_011530954.2| PREDICTED: Homo sapiens XK re... 38.2 0.069
gi|58761497|ref|NM_001011725.1| Homo sapiens heterogeneous nucl... 34.2 1.1
gi|58761495|ref|NM_001011724.1| Homo sapiens heterogeneous nucl... 34.2 1.1
> gi|115529279|ref|NR_002944.2| Homo sapiens heterogeneous nuclear
ribonucleoprotein A1 pseudogene 10 (HNRNPA1P10), non-coding
RNA
Length=1354
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAAGTTTCCAGAACCACTTCG 48
|||||||||||||||||||||
Sbjct 665 AAAGTTTCCAGAACCACTTCG 645
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CGAAGTGGTTCTGGAAACTTT 21
|||||||||||||||||||||
Sbjct 645 CGAAGTGGTTCTGGAAACTTT 665
> gi|1034579321|ref|XM_017019251.1| PREDICTED: Homo sapiens heterogeneous
nuclear ribonucleoprotein A1 (HNRNPA1), transcript
variant X3, mRNA
Length=1702
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAAGTTTCCAGAACCACTTCG 48
|||||||||||||||||||||
Sbjct 718 AAAGTTTCCAGAACCACTTCG 698
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CGAAGTGGTTCTGGAAACTTT 21
|||||||||||||||||||||
Sbjct 698 CGAAGTGGTTCTGGAAACTTT 718
> gi|530400150|ref|XR_245923.1| PREDICTED: Homo sapiens heterogeneous
nuclear ribonucleoprotein A1 (HNRNPA1), transcript variant
X1, misc_RNA
Length=1441
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAAGTTTCCAGAACCACTTCG 48
|||||||||||||||||||||
Sbjct 718 AAAGTTTCCAGAACCACTTCG 698
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CGAAGTGGTTCTGGAAACTTT 21
|||||||||||||||||||||
Sbjct 698 CGAAGTGGTTCTGGAAACTTT 718
> gi|530400151|ref|XM_005268826.1| PREDICTED: Homo sapiens heterogeneous
nuclear ribonucleoprotein A1 (HNRNPA1), transcript
variant X2, mRNA
Length=1661
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAAGTTTCCAGAACCACTTCG 48
|||||||||||||||||||||
Sbjct 718 AAAGTTTCCAGAACCACTTCG 698
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CGAAGTGGTTCTGGAAACTTT 21
|||||||||||||||||||||
Sbjct 698 CGAAGTGGTTCTGGAAACTTT 718
> gi|994318938|ref|NM_002136.3| Homo sapiens heterogeneous nuclear
ribonucleoprotein A1 (HNRNPA1), transcript variant 1, mRNA
Length=1799
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAAGTTTCCAGAACCACTTCG 48
|||||||||||||||||||||
Sbjct 724 AAAGTTTCCAGAACCACTTCG 704
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CGAAGTGGTTCTGGAAACTTT 21
|||||||||||||||||||||
Sbjct 704 CGAAGTGGTTCTGGAAACTTT 724
> gi|994318937|ref|NM_031157.3| Homo sapiens heterogeneous nuclear
ribonucleoprotein A1 (HNRNPA1), transcript variant 2, mRNA
Length=1955
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAAGTTTCCAGAACCACTTCG 48
|||||||||||||||||||||
Sbjct 724 AAAGTTTCCAGAACCACTTCG 704
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CGAAGTGGTTCTGGAAACTTT 21
|||||||||||||||||||||
Sbjct 704 CGAAGTGGTTCTGGAAACTTT 724
> gi|994321657|ref|NR_135167.1| Homo sapiens heterogeneous nuclear
ribonucleoprotein A1 (HNRNPA1), transcript variant 3, non-coding
RNA
Length=1324
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAAGTTTCCAGAACCACTTCG 48
|||||||||||||||||||||
Sbjct 724 AAAGTTTCCAGAACCACTTCG 704
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CGAAGTGGTTCTGGAAACTTT 21
|||||||||||||||||||||
Sbjct 704 CGAAGTGGTTCTGGAAACTTT 724
> gi|119943148|ref|NR_003277.1| Homo sapiens heterogeneous nuclear
ribonucleoprotein A1 pseudogene 33 (HNRNPA1P33), non-coding
RNA
Length=542
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAAGTTTCCAGAACCACTTCG 48
|||||||||||||||||||||
Sbjct 148 AAAGTTTCCAGAACCACTTCG 128
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CGAAGTGGTTCTGGAAACTTT 21
|||||||||||||||||||||
Sbjct 128 CGAAGTGGTTCTGGAAACTTT 148
> gi|1034674303|ref|XM_011530954.2| PREDICTED: Homo sapiens XK
related, X-linked (XKRX), transcript variant X1, mRNA
Length=4149
Score = 38.2 bits (19), Expect = 0.069
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 28 AAAGTTTCCAGAACCACTT 46
|||||||||||||||||||
Sbjct 3083 AAAGTTTCCAGAACCACTT 3065
Score = 38.2 bits (19), Expect = 0.069
Identities = 19/19 (100%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 3 AAGTGGTTCTGGAAACTTT 21
|||||||||||||||||||
Sbjct 3065 AAGTGGTTCTGGAAACTTT 3083
> gi|58761497|ref|NM_001011725.1| Homo sapiens heterogeneous nuclear
ribonucleoprotein A1-like 2 (HNRNPA1L2), transcript variant
2, mRNA
Length=2224
Score = 34.2 bits (17), Expect = 1.1
Identities = 20/21 (95%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAAGTTTCCAGAACCACTTCG 48
||||||||||||||| |||||
Sbjct 1538 AAAGTTTCCAGAACCCCTTCG 1518
Score = 34.2 bits (17), Expect = 1.1
Identities = 20/21 (95%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CGAAGTGGTTCTGGAAACTTT 21
||||| |||||||||||||||
Sbjct 1518 CGAAGGGGTTCTGGAAACTTT 1538
> gi|58761495|ref|NM_001011724.1| Homo sapiens heterogeneous nuclear
ribonucleoprotein A1-like 2 (HNRNPA1L2), transcript variant
1, mRNA
Length=2365
Score = 34.2 bits (17), Expect = 1.1
Identities = 20/21 (95%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 AAAGTTTCCAGAACCACTTCG 48
||||||||||||||| |||||
Sbjct 1679 AAAGTTTCCAGAACCCCTTCG 1659
Score = 34.2 bits (17), Expect = 1.1
Identities = 20/21 (95%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CGAAGTGGTTCTGGAAACTTT 21
||||| |||||||||||||||
Sbjct 1659 CGAAGGGGTTCTGGAAACTTT 1679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 21028271724
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2