BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= CCTTTGCGTGAATGTTGTTC (evalue = 10)
Length=20
Score E
Sequences producing significant alignments: (Bits) Value
gi|1034581592|ref|XM_017019967.1| PREDICTED: Homo sapiens tecto... 40.1 0.002
gi|1034581590|ref|XM_017019966.1| PREDICTED: Homo sapiens tecto... 40.1 0.002
gi|1034581586|ref|XM_017019965.1| PREDICTED: Homo sapiens tecto... 40.1 0.002
gi|1034581589|ref|XM_006719599.2| PREDICTED: Homo sapiens tecto... 40.1 0.002
gi|1034581598|ref|XM_017019969.1| PREDICTED: Homo sapiens tecto... 40.1 0.002
gi|1034581583|ref|XM_005253935.3| PREDICTED: Homo sapiens tecto... 40.1 0.002
gi|1034581582|ref|XM_005253934.3| PREDICTED: Homo sapiens tecto... 40.1 0.002
gi|1034581600|ref|XR_243022.3| PREDICTED: Homo sapiens tectonic... 40.1 0.002
gi|1034581579|ref|XM_011538738.2| PREDICTED: Homo sapiens tecto... 40.1 0.002
gi|1034581581|ref|XR_243021.3| PREDICTED: Homo sapiens tectonic... 40.1 0.002
gi|1034581580|ref|XR_429116.2| PREDICTED: Homo sapiens tectonic... 40.1 0.002
gi|1034581575|ref|XM_011538737.2| PREDICTED: Homo sapiens tecto... 40.1 0.002
gi|1034581576|ref|XR_944717.2| PREDICTED: Homo sapiens tectonic... 40.1 0.002
gi|1034581572|ref|XM_011538733.2| PREDICTED: Homo sapiens tecto... 40.1 0.002
gi|1034581574|ref|XM_006719594.2| PREDICTED: Homo sapiens tecto... 40.1 0.002
gi|767975302|ref|XM_011538735.1| PREDICTED: Homo sapiens tecton... 40.1 0.002
gi|1034581577|ref|XM_017019964.1| PREDICTED: Homo sapiens tecto... 40.1 0.002
gi|1034581594|ref|XM_006719597.3| PREDICTED: Homo sapiens tecto... 40.1 0.002
gi|1034581584|ref|XM_006719595.2| PREDICTED: Homo sapiens tecto... 40.1 0.002
gi|1034581573|ref|XM_011538734.2| PREDICTED: Homo sapiens tecto... 40.1 0.002
gi|1034581588|ref|XM_006719598.2| PREDICTED: Homo sapiens tecto... 40.1 0.002
gi|1034581585|ref|XM_006719596.2| PREDICTED: Homo sapiens tecto... 40.1 0.002
gi|1034581597|ref|XM_006719600.2| PREDICTED: Homo sapiens tecto... 40.1 0.002
gi|1034581595|ref|XM_017019968.1| PREDICTED: Homo sapiens tecto... 40.1 0.002
gi|985567544|ref|NM_001319680.1| Homo sapiens tectonic family m... 40.1 0.002
gi|291190740|ref|NM_001082537.2| Homo sapiens tectonic family m... 40.1 0.002
gi|291190743|ref|NM_001082538.2| Homo sapiens tectonic family m... 40.1 0.002
gi|291190746|ref|NM_024549.5| Homo sapiens tectonic family memb... 40.1 0.002
gi|985567548|ref|NM_001319681.1| Homo sapiens tectonic family m... 40.1 0.002
gi|291190754|ref|NM_001173976.1| Homo sapiens tectonic family m... 40.1 0.002
gi|985567543|ref|NM_001173975.2| Homo sapiens tectonic family m... 40.1 0.002
gi|985567561|ref|NR_135088.1| Homo sapiens tectonic family memb... 40.1 0.002
gi|1034632146|ref|XM_006713073.3| PREDICTED: Homo sapiens phosp... 30.2 1.9
gi|1034632147|ref|XM_017006025.1| PREDICTED: Homo sapiens phosp... 30.2 1.9
gi|305410787|ref|NM_000637.3| Homo sapiens glutathione reductas... 28.2 7.3
gi|305410790|ref|NM_001195103.1| Homo sapiens glutathione reduc... 28.2 7.3
gi|305410788|ref|NM_001195102.1| Homo sapiens glutathione reduc... 28.2 7.3
gi|305410792|ref|NM_001195104.1| Homo sapiens glutathione reduc... 28.2 7.3
> gi|1034581592|ref|XM_017019967.1| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X19, mRNA
Length=1958
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 CCTTTGCGTGAATGTTGTTC 20
||||||||||||||||||||
Sbjct 1048 CCTTTGCGTGAATGTTGTTC 1067
> gi|1034581590|ref|XM_017019966.1| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X18, mRNA
Length=2250
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 CCTTTGCGTGAATGTTGTTC 20
||||||||||||||||||||
Sbjct 1340 CCTTTGCGTGAATGTTGTTC 1359
> gi|1034581586|ref|XM_017019965.1| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X15, mRNA
Length=2203
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 CCTTTGCGTGAATGTTGTTC 20
||||||||||||||||||||
Sbjct 1293 CCTTTGCGTGAATGTTGTTC 1312
> gi|1034581589|ref|XM_006719599.2| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X17, mRNA
Length=1889
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 CCTTTGCGTGAATGTTGTTC 20
||||||||||||||||||||
Sbjct 979 CCTTTGCGTGAATGTTGTTC 998
> gi|1034581598|ref|XM_017019969.1| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X23, mRNA
Length=1847
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 CCTTTGCGTGAATGTTGTTC 20
||||||||||||||||||||
Sbjct 937 CCTTTGCGTGAATGTTGTTC 956
> gi|1034581583|ref|XM_005253935.3| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X12, mRNA
Length=1393
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 CCTTTGCGTGAATGTTGTTC 20
||||||||||||||||||||
Sbjct 1014 CCTTTGCGTGAATGTTGTTC 1033
> gi|1034581582|ref|XM_005253934.3| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X11, mRNA
Length=1408
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 CCTTTGCGTGAATGTTGTTC 20
||||||||||||||||||||
Sbjct 1014 CCTTTGCGTGAATGTTGTTC 1033
> gi|1034581600|ref|XR_243022.3| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X24, misc_RNA
Length=1556
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 CCTTTGCGTGAATGTTGTTC 20
||||||||||||||||||||
Sbjct 1014 CCTTTGCGTGAATGTTGTTC 1033
> gi|1034581579|ref|XM_011538738.2| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X8, mRNA
Length=1570
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 CCTTTGCGTGAATGTTGTTC 20
||||||||||||||||||||
Sbjct 1014 CCTTTGCGTGAATGTTGTTC 1033
> gi|1034581581|ref|XR_243021.3| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X10, misc_RNA
Length=1682
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 CCTTTGCGTGAATGTTGTTC 20
||||||||||||||||||||
Sbjct 1014 CCTTTGCGTGAATGTTGTTC 1033
> gi|1034581580|ref|XR_429116.2| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X9, misc_RNA
Length=1697
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 CCTTTGCGTGAATGTTGTTC 20
||||||||||||||||||||
Sbjct 1014 CCTTTGCGTGAATGTTGTTC 1033
> gi|1034581575|ref|XM_011538737.2| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X5, mRNA
Length=1696
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 CCTTTGCGTGAATGTTGTTC 20
||||||||||||||||||||
Sbjct 1014 CCTTTGCGTGAATGTTGTTC 1033
> gi|1034581576|ref|XR_944717.2| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X6, misc_RNA
Length=1923
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 CCTTTGCGTGAATGTTGTTC 20
||||||||||||||||||||
Sbjct 1014 CCTTTGCGTGAATGTTGTTC 1033
> gi|1034581572|ref|XM_011538733.2| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X1, mRNA
Length=1882
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 CCTTTGCGTGAATGTTGTTC 20
||||||||||||||||||||
Sbjct 972 CCTTTGCGTGAATGTTGTTC 991
> gi|1034581574|ref|XM_006719594.2| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X4, mRNA
Length=1985
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 CCTTTGCGTGAATGTTGTTC 20
||||||||||||||||||||
Sbjct 1075 CCTTTGCGTGAATGTTGTTC 1094
> gi|767975302|ref|XM_011538735.1| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X3, mRNA
Length=1781
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 CCTTTGCGTGAATGTTGTTC 20
||||||||||||||||||||
Sbjct 1014 CCTTTGCGTGAATGTTGTTC 1033
> gi|1034581577|ref|XM_017019964.1| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X7, mRNA
Length=1827
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 CCTTTGCGTGAATGTTGTTC 20
||||||||||||||||||||
Sbjct 1075 CCTTTGCGTGAATGTTGTTC 1094
> gi|1034581594|ref|XM_006719597.3| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X20, mRNA
Length=1811
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 CCTTTGCGTGAATGTTGTTC 20
||||||||||||||||||||
Sbjct 901 CCTTTGCGTGAATGTTGTTC 920
> gi|1034581584|ref|XM_006719595.2| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X13, mRNA
Length=2091
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 CCTTTGCGTGAATGTTGTTC 20
||||||||||||||||||||
Sbjct 1181 CCTTTGCGTGAATGTTGTTC 1200
> gi|1034581573|ref|XM_011538734.2| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X2, mRNA
Length=1879
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 CCTTTGCGTGAATGTTGTTC 20
||||||||||||||||||||
Sbjct 969 CCTTTGCGTGAATGTTGTTC 988
> gi|1034581588|ref|XM_006719598.2| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X16, mRNA
Length=2084
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 CCTTTGCGTGAATGTTGTTC 20
||||||||||||||||||||
Sbjct 1174 CCTTTGCGTGAATGTTGTTC 1193
> gi|1034581585|ref|XM_006719596.2| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X14, mRNA
Length=2114
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 CCTTTGCGTGAATGTTGTTC 20
||||||||||||||||||||
Sbjct 1204 CCTTTGCGTGAATGTTGTTC 1223
> gi|1034581597|ref|XM_006719600.2| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X22, mRNA
Length=1828
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 CCTTTGCGTGAATGTTGTTC 20
||||||||||||||||||||
Sbjct 918 CCTTTGCGTGAATGTTGTTC 937
> gi|1034581595|ref|XM_017019968.1| PREDICTED: Homo sapiens tectonic
family member 1 (TCTN1), transcript variant X21, mRNA
Length=2047
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 CCTTTGCGTGAATGTTGTTC 20
||||||||||||||||||||
Sbjct 1137 CCTTTGCGTGAATGTTGTTC 1156
> gi|985567544|ref|NM_001319680.1| Homo sapiens tectonic family
member 1 (TCTN1), transcript variant 6, mRNA
Length=1862
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 CCTTTGCGTGAATGTTGTTC 20
||||||||||||||||||||
Sbjct 1110 CCTTTGCGTGAATGTTGTTC 1129
> gi|291190740|ref|NM_001082537.2| Homo sapiens tectonic family
member 1 (TCTN1), transcript variant 2, mRNA
Length=2025
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 CCTTTGCGTGAATGTTGTTC 20
||||||||||||||||||||
Sbjct 1110 CCTTTGCGTGAATGTTGTTC 1129
> gi|291190743|ref|NM_001082538.2| Homo sapiens tectonic family
member 1 (TCTN1), transcript variant 1, mRNA
Length=2040
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 CCTTTGCGTGAATGTTGTTC 20
||||||||||||||||||||
Sbjct 1110 CCTTTGCGTGAATGTTGTTC 1129
> gi|291190746|ref|NM_024549.5| Homo sapiens tectonic family member
1 (TCTN1), transcript variant 3, mRNA
Length=1983
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 CCTTTGCGTGAATGTTGTTC 20
||||||||||||||||||||
Sbjct 1068 CCTTTGCGTGAATGTTGTTC 1087
> gi|985567548|ref|NM_001319681.1| Homo sapiens tectonic family
member 1 (TCTN1), transcript variant 7, mRNA
Length=2198
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 CCTTTGCGTGAATGTTGTTC 20
||||||||||||||||||||
Sbjct 1283 CCTTTGCGTGAATGTTGTTC 1302
> gi|291190754|ref|NM_001173976.1| Homo sapiens tectonic family
member 1 (TCTN1), transcript variant 5, mRNA
Length=1969
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 CCTTTGCGTGAATGTTGTTC 20
||||||||||||||||||||
Sbjct 1186 CCTTTGCGTGAATGTTGTTC 1205
> gi|985567543|ref|NM_001173975.2| Homo sapiens tectonic family
member 1 (TCTN1), transcript variant 4, mRNA
Length=2086
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 CCTTTGCGTGAATGTTGTTC 20
||||||||||||||||||||
Sbjct 1171 CCTTTGCGTGAATGTTGTTC 1190
> gi|985567561|ref|NR_135088.1| Homo sapiens tectonic family member
1 (TCTN1), transcript variant 9, non-coding RNA
Length=2154
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 CCTTTGCGTGAATGTTGTTC 20
||||||||||||||||||||
Sbjct 1466 CCTTTGCGTGAATGTTGTTC 1485
> gi|1034632146|ref|XM_006713073.3| PREDICTED: Homo sapiens phospholipase
C like 2 (PLCL2), transcript variant X4, mRNA
Length=12140
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 1 CCTTTGCGTGAATGT 15
|||||||||||||||
Sbjct 6443 CCTTTGCGTGAATGT 6457
> gi|1034632147|ref|XM_017006025.1| PREDICTED: Homo sapiens phospholipase
C like 2 (PLCL2), transcript variant X5, mRNA
Length=12244
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 1 CCTTTGCGTGAATGT 15
|||||||||||||||
Sbjct 6443 CCTTTGCGTGAATGT 6457
> gi|305410787|ref|NM_000637.3| Homo sapiens glutathione reductase
(GSR), transcript variant 1, mRNA
Length=3174
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 TTGCGTGAATGTTG 17
||||||||||||||
Sbjct 437 TTGCGTGAATGTTG 450
> gi|305410790|ref|NM_001195103.1| Homo sapiens glutathione reductase
(GSR), transcript variant 3, mRNA
Length=3015
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 TTGCGTGAATGTTG 17
||||||||||||||
Sbjct 437 TTGCGTGAATGTTG 450
> gi|305410788|ref|NM_001195102.1| Homo sapiens glutathione reductase
(GSR), transcript variant 2, mRNA
Length=3087
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 TTGCGTGAATGTTG 17
||||||||||||||
Sbjct 437 TTGCGTGAATGTTG 450
> gi|305410792|ref|NM_001195104.1| Homo sapiens glutathione reductase
(GSR), transcript variant 4, mRNA
Length=2928
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 TTGCGTGAATGTTG 17
||||||||||||||
Sbjct 437 TTGCGTGAATGTTG 450
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 2337180340
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2