BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= CCTTCCAGACAACTATGAGATCTCGAGATCTCATAGTTGTCTGGAAGGTTTTT (evalue = 10)
Length=53
Score E
Sequences producing significant alignments: (Bits) Value
gi|1034611107|ref|XM_017003182.1| PREDICTED: Homo sapiens ubiqu... 44.1 0.001
gi|767913679|ref|XM_011532487.1| PREDICTED: Homo sapiens ubiqui... 44.1 0.001
gi|767913678|ref|XM_006711923.2| PREDICTED: Homo sapiens ubiqui... 44.1 0.001
gi|767913677|ref|XR_939653.1| PREDICTED: Homo sapiens ubiquitin... 44.1 0.001
gi|767913676|ref|XR_939652.1| PREDICTED: Homo sapiens ubiquitin... 44.1 0.001
gi|376319200|ref|NM_001256726.1| Homo sapiens ubiquitin specifi... 44.1 0.001
gi|376319198|ref|NM_001256725.1| Homo sapiens ubiquitin specifi... 44.1 0.001
gi|376000080|ref|NM_006590.3| Homo sapiens ubiquitin specific p... 44.1 0.001
gi|767913681|ref|XM_011532488.1| PREDICTED: Homo sapiens ubiqui... 44.1 0.001
gi|1034611106|ref|XR_001738593.1| PREDICTED: Homo sapiens ubiqu... 44.1 0.001
gi|376319205|ref|NM_001256728.1| Homo sapiens ubiquitin specifi... 44.1 0.001
gi|376319202|ref|NM_001256727.1| Homo sapiens ubiquitin specifi... 44.1 0.001
gi|578802667|ref|XM_006711922.1| PREDICTED: Homo sapiens ubiqui... 44.1 0.001
gi|376319204|ref|NR_046347.1| Homo sapiens ubiquitin specific p... 44.1 0.001
gi|1034694077|ref|XR_001757300.1| PREDICTED: Homo sapiens uncha... 32.2 4.2
gi|1034647828|ref|XR_001742907.1| PREDICTED: Homo sapiens uncha... 32.2 4.2
> gi|1034611107|ref|XM_017003182.1| PREDICTED: Homo sapiens ubiquitin
specific peptidase 39 (USP39), transcript variant X6,
mRNA
Length=2234
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 27 GATCTCATAGTTGTCTGGAAGG 48
||||||||||||||||||||||
Sbjct 604 GATCTCATAGTTGTCTGGAAGG 583
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 1 CCTTCCAGACAACTATGAGATC 22
||||||||||||||||||||||
Sbjct 583 CCTTCCAGACAACTATGAGATC 604
> gi|767913679|ref|XM_011532487.1| PREDICTED: Homo sapiens ubiquitin
specific peptidase 39 (USP39), transcript variant X7,
mRNA
Length=2230
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 27 GATCTCATAGTTGTCTGGAAGG 48
||||||||||||||||||||||
Sbjct 600 GATCTCATAGTTGTCTGGAAGG 579
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 1 CCTTCCAGACAACTATGAGATC 22
||||||||||||||||||||||
Sbjct 579 CCTTCCAGACAACTATGAGATC 600
> gi|767913678|ref|XM_006711923.2| PREDICTED: Homo sapiens ubiquitin
specific peptidase 39 (USP39), transcript variant X4,
mRNA
Length=2224
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 27 GATCTCATAGTTGTCTGGAAGG 48
||||||||||||||||||||||
Sbjct 594 GATCTCATAGTTGTCTGGAAGG 573
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 1 CCTTCCAGACAACTATGAGATC 22
||||||||||||||||||||||
Sbjct 573 CCTTCCAGACAACTATGAGATC 594
> gi|767913677|ref|XR_939653.1| PREDICTED: Homo sapiens ubiquitin
specific peptidase 39 (USP39), transcript variant X2, misc_RNA
Length=2164
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 27 GATCTCATAGTTGTCTGGAAGG 48
||||||||||||||||||||||
Sbjct 611 GATCTCATAGTTGTCTGGAAGG 590
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 1 CCTTCCAGACAACTATGAGATC 22
||||||||||||||||||||||
Sbjct 590 CCTTCCAGACAACTATGAGATC 611
> gi|767913676|ref|XR_939652.1| PREDICTED: Homo sapiens ubiquitin
specific peptidase 39 (USP39), transcript variant X1, misc_RNA
Length=2327
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 27 GATCTCATAGTTGTCTGGAAGG 48
||||||||||||||||||||||
Sbjct 611 GATCTCATAGTTGTCTGGAAGG 590
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 1 CCTTCCAGACAACTATGAGATC 22
||||||||||||||||||||||
Sbjct 590 CCTTCCAGACAACTATGAGATC 611
> gi|376319200|ref|NM_001256726.1| Homo sapiens ubiquitin specific
peptidase 39 (USP39), transcript variant 3, mRNA
Length=2162
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 27 GATCTCATAGTTGTCTGGAAGG 48
||||||||||||||||||||||
Sbjct 647 GATCTCATAGTTGTCTGGAAGG 626
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 1 CCTTCCAGACAACTATGAGATC 22
||||||||||||||||||||||
Sbjct 626 CCTTCCAGACAACTATGAGATC 647
> gi|376319198|ref|NM_001256725.1| Homo sapiens ubiquitin specific
peptidase 39 (USP39), transcript variant 2, mRNA
Length=2135
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 27 GATCTCATAGTTGTCTGGAAGG 48
||||||||||||||||||||||
Sbjct 647 GATCTCATAGTTGTCTGGAAGG 626
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 1 CCTTCCAGACAACTATGAGATC 22
||||||||||||||||||||||
Sbjct 626 CCTTCCAGACAACTATGAGATC 647
> gi|376000080|ref|NM_006590.3| Homo sapiens ubiquitin specific
peptidase 39 (USP39), transcript variant 1, mRNA
Length=2298
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 27 GATCTCATAGTTGTCTGGAAGG 48
||||||||||||||||||||||
Sbjct 647 GATCTCATAGTTGTCTGGAAGG 626
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 1 CCTTCCAGACAACTATGAGATC 22
||||||||||||||||||||||
Sbjct 626 CCTTCCAGACAACTATGAGATC 647
> gi|767913681|ref|XM_011532488.1| PREDICTED: Homo sapiens ubiquitin
specific peptidase 39 (USP39), transcript variant X8,
mRNA
Length=2163
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 27 GATCTCATAGTTGTCTGGAAGG 48
||||||||||||||||||||||
Sbjct 533 GATCTCATAGTTGTCTGGAAGG 512
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 1 CCTTCCAGACAACTATGAGATC 22
||||||||||||||||||||||
Sbjct 512 CCTTCCAGACAACTATGAGATC 533
> gi|1034611106|ref|XR_001738593.1| PREDICTED: Homo sapiens ubiquitin
specific peptidase 39 (USP39), transcript variant X3,
misc_RNA
Length=2243
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 27 GATCTCATAGTTGTCTGGAAGG 48
||||||||||||||||||||||
Sbjct 527 GATCTCATAGTTGTCTGGAAGG 506
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 1 CCTTCCAGACAACTATGAGATC 22
||||||||||||||||||||||
Sbjct 506 CCTTCCAGACAACTATGAGATC 527
> gi|376319205|ref|NM_001256728.1| Homo sapiens ubiquitin specific
peptidase 39 (USP39), transcript variant 5, mRNA
Length=2108
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 27 GATCTCATAGTTGTCTGGAAGG 48
||||||||||||||||||||||
Sbjct 457 GATCTCATAGTTGTCTGGAAGG 436
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 1 CCTTCCAGACAACTATGAGATC 22
||||||||||||||||||||||
Sbjct 436 CCTTCCAGACAACTATGAGATC 457
> gi|376319202|ref|NM_001256727.1| Homo sapiens ubiquitin specific
peptidase 39 (USP39), transcript variant 4, mRNA
Length=2183
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 27 GATCTCATAGTTGTCTGGAAGG 48
||||||||||||||||||||||
Sbjct 532 GATCTCATAGTTGTCTGGAAGG 511
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 1 CCTTCCAGACAACTATGAGATC 22
||||||||||||||||||||||
Sbjct 511 CCTTCCAGACAACTATGAGATC 532
> gi|578802667|ref|XM_006711922.1| PREDICTED: Homo sapiens ubiquitin
specific peptidase 39 (USP39), transcript variant X5,
mRNA
Length=2145
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 27 GATCTCATAGTTGTCTGGAAGG 48
||||||||||||||||||||||
Sbjct 515 GATCTCATAGTTGTCTGGAAGG 494
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 1 CCTTCCAGACAACTATGAGATC 22
||||||||||||||||||||||
Sbjct 494 CCTTCCAGACAACTATGAGATC 515
> gi|376319204|ref|NR_046347.1| Homo sapiens ubiquitin specific
peptidase 39 (USP39), transcript variant 6, non-coding RNA
Length=2186
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 27 GATCTCATAGTTGTCTGGAAGG 48
||||||||||||||||||||||
Sbjct 535 GATCTCATAGTTGTCTGGAAGG 514
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 1 CCTTCCAGACAACTATGAGATC 22
||||||||||||||||||||||
Sbjct 514 CCTTCCAGACAACTATGAGATC 535
> gi|1034694077|ref|XR_001757300.1| PREDICTED: Homo sapiens uncharacterized
LOC107986455 (LOC107986455), ncRNA
Length=1701
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 35 AGTTGTCTGGAAGGTT 50
||||||||||||||||
Sbjct 345 AGTTGTCTGGAAGGTT 330
> gi|1034647828|ref|XR_001742907.1| PREDICTED: Homo sapiens uncharacterized
LOC107986455 (LOC107986455), ncRNA
Length=1701
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 35 AGTTGTCTGGAAGGTT 50
||||||||||||||||
Sbjct 345 AGTTGTCTGGAAGGTT 330
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 21028271724
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2