BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= CCTGCAAACTGCAAAGTTGA (evalue = 10)
Length=20
Score E
Sequences producing significant alignments: (Bits) Value
gi|166197663|ref|NM_001237.3| Homo sapiens cyclin A2 (CCNA2), mRNA 40.1 0.002
gi|444299621|ref|NM_001276318.1| Homo sapiens protein phosphata... 32.2 0.47
gi|316983159|ref|NM_001199984.1| Homo sapiens NADH dehydrogenas... 32.2 0.47
gi|316983152|ref|NM_005006.6| Homo sapiens NADH dehydrogenase (... 32.2 0.47
gi|316983153|ref|NM_001199981.1| Homo sapiens NADH dehydrogenas... 32.2 0.47
gi|316983155|ref|NM_001199983.1| Homo sapiens NADH dehydrogenas... 32.2 0.47
gi|316983157|ref|NM_001199982.1| Homo sapiens NADH dehydrogenas... 32.2 0.47
gi|1034614223|ref|XM_017004188.1| PREDICTED: Homo sapiens NADH:... 32.2 0.47
gi|1034688069|ref|XR_921974.2| PREDICTED: Homo sapiens uncharac... 30.2 1.9
gi|1034688068|ref|XR_431398.3| PREDICTED: Homo sapiens uncharac... 30.2 1.9
gi|1034688067|ref|XR_001742218.1| PREDICTED: Homo sapiens uncha... 30.2 1.9
gi|349501059|ref|NM_001274.5| Homo sapiens checkpoint kinase 1 ... 30.2 1.9
gi|349501083|ref|NR_045205.1| Homo sapiens checkpoint kinase 1 ... 30.2 1.9
gi|1034571804|ref|XM_011542563.2| PREDICTED: Homo sapiens check... 30.2 1.9
gi|1034571803|ref|XM_011542562.2| PREDICTED: Homo sapiens check... 30.2 1.9
gi|349501062|ref|NR_045204.1| Homo sapiens checkpoint kinase 1 ... 30.2 1.9
gi|349501060|ref|NM_001244846.1| Homo sapiens checkpoint kinase... 30.2 1.9
gi|349501056|ref|NM_001114122.2| Homo sapiens checkpoint kinase... 30.2 1.9
gi|1034654202|ref|XM_011515136.2| PREDICTED: Homo sapiens ATP b... 30.2 1.9
gi|597709764|ref|NM_152701.4| Homo sapiens ATP binding cassette... 30.2 1.9
gi|1034654215|ref|XM_011515143.2| PREDICTED: Homo sapiens ATP b... 30.2 1.9
gi|1034654216|ref|XM_011515144.2| PREDICTED: Homo sapiens ATP b... 30.2 1.9
gi|1034654209|ref|XM_017011767.1| PREDICTED: Homo sapiens ATP b... 30.2 1.9
gi|1034654211|ref|XM_017011768.1| PREDICTED: Homo sapiens ATP b... 30.2 1.9
gi|1034654208|ref|XM_011515139.2| PREDICTED: Homo sapiens ATP b... 30.2 1.9
gi|1034654207|ref|XM_011515138.2| PREDICTED: Homo sapiens ATP b... 30.2 1.9
gi|1034654206|ref|XR_926919.2| PREDICTED: Homo sapiens ATP bind... 30.2 1.9
gi|1034654205|ref|XM_011515137.2| PREDICTED: Homo sapiens ATP b... 30.2 1.9
gi|1034654201|ref|XM_011515134.2| PREDICTED: Homo sapiens ATP b... 30.2 1.9
gi|1034654199|ref|XR_001744555.1| PREDICTED: Homo sapiens ATP b... 30.2 1.9
gi|1034654204|ref|XR_926916.2| PREDICTED: Homo sapiens ATP bind... 30.2 1.9
gi|1034654200|ref|XR_926915.2| PREDICTED: Homo sapiens ATP bind... 30.2 1.9
gi|1034654198|ref|XR_926914.2| PREDICTED: Homo sapiens ATP bind... 30.2 1.9
gi|1034654197|ref|XM_011515133.2| PREDICTED: Homo sapiens ATP b... 30.2 1.9
gi|1034654196|ref|XM_011515132.2| PREDICTED: Homo sapiens ATP b... 30.2 1.9
gi|1034654195|ref|XM_011515131.2| PREDICTED: Homo sapiens ATP b... 30.2 1.9
gi|1034654194|ref|XM_011515130.2| PREDICTED: Homo sapiens ATP b... 30.2 1.9
gi|1034654218|ref|XM_011515146.2| PREDICTED: Homo sapiens ATP b... 30.2 1.9
gi|1034654217|ref|XM_011515145.2| PREDICTED: Homo sapiens ATP b... 30.2 1.9
gi|1034654214|ref|XM_011515142.2| PREDICTED: Homo sapiens ATP b... 30.2 1.9
gi|1034654213|ref|XM_011515141.2| PREDICTED: Homo sapiens ATP b... 30.2 1.9
gi|1034654219|ref|XM_011515147.2| PREDICTED: Homo sapiens ATP b... 30.2 1.9
gi|1034654221|ref|XM_011515149.2| PREDICTED: Homo sapiens ATP b... 30.2 1.9
gi|1034654220|ref|XM_011515148.2| PREDICTED: Homo sapiens ATP b... 30.2 1.9
gi|1034654222|ref|XM_017011769.1| PREDICTED: Homo sapiens ATP b... 30.2 1.9
gi|1034639744|ref|XR_938730.2| PREDICTED: Homo sapiens coiled-c... 30.2 1.9
gi|1034639743|ref|XR_938729.2| PREDICTED: Homo sapiens coiled-c... 30.2 1.9
gi|1034639745|ref|XM_017008161.1| PREDICTED: Homo sapiens coile... 30.2 1.9
gi|112420967|ref|NM_001042784.1| Homo sapiens coiled-coil domai... 30.2 1.9
gi|767931825|ref|XM_011531913.1| PREDICTED: Homo sapiens coiled... 30.2 1.9
gi|1034639735|ref|XM_011531910.2| PREDICTED: Homo sapiens coile... 30.2 1.9
gi|1034639736|ref|XM_017008160.1| PREDICTED: Homo sapiens coile... 30.2 1.9
gi|1034639733|ref|XM_011531908.2| PREDICTED: Homo sapiens coile... 30.2 1.9
gi|1034639732|ref|XM_006714204.3| PREDICTED: Homo sapiens coile... 30.2 1.9
gi|1034639740|ref|XM_005262974.4| PREDICTED: Homo sapiens coile... 30.2 1.9
gi|1034639742|ref|XM_011531916.2| PREDICTED: Homo sapiens coile... 30.2 1.9
gi|1034639739|ref|XM_011531914.2| PREDICTED: Homo sapiens coile... 30.2 1.9
gi|1034639741|ref|XM_011531915.2| PREDICTED: Homo sapiens coile... 30.2 1.9
gi|1034639738|ref|XM_011531912.2| PREDICTED: Homo sapiens coile... 30.2 1.9
gi|767931834|ref|XM_011531917.1| PREDICTED: Homo sapiens coiled... 30.2 1.9
gi|767931821|ref|XM_011531911.1| PREDICTED: Homo sapiens coiled... 30.2 1.9
gi|1034639734|ref|XM_011531909.2| PREDICTED: Homo sapiens coile... 30.2 1.9
gi|1034618690|ref|XR_939794.2| PREDICTED: Homo sapiens uncharac... 30.2 1.9
gi|1034618689|ref|XR_427005.3| PREDICTED: Homo sapiens uncharac... 30.2 1.9
gi|1034618688|ref|XR_001739319.1| PREDICTED: Homo sapiens uncha... 30.2 1.9
gi|1034681902|ref|XR_001732043.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|1034680312|ref|XR_001731230.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|1034680311|ref|XR_001731229.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|1034600666|ref|XM_011525088.2| PREDICTED: Homo sapiens trinu... 28.2 7.3
gi|217416331|ref|NM_001142640.1| Homo sapiens trinucleotide rep... 28.2 7.3
gi|217416330|ref|NM_018996.3| Homo sapiens trinucleotide repeat... 28.2 7.3
gi|1034600664|ref|XM_017024908.1| PREDICTED: Homo sapiens trinu... 28.2 7.3
gi|1034600667|ref|XM_006722000.3| PREDICTED: Homo sapiens trinu... 28.2 7.3
gi|1034600662|ref|XM_006721997.3| PREDICTED: Homo sapiens trinu... 28.2 7.3
gi|1034600656|ref|XM_006721996.3| PREDICTED: Homo sapiens trinu... 28.2 7.3
gi|1034600658|ref|XM_017024906.1| PREDICTED: Homo sapiens trinu... 28.2 7.3
gi|1034600660|ref|XM_017024907.1| PREDICTED: Homo sapiens trinu... 28.2 7.3
gi|1034601453|ref|XR_001752643.1| PREDICTED: Homo sapiens CTS t... 28.2 7.3
gi|1034601451|ref|XM_011524011.2| PREDICTED: Homo sapiens CTS t... 28.2 7.3
gi|1034601447|ref|XR_429824.3| PREDICTED: Homo sapiens CTS telo... 28.2 7.3
gi|1034601449|ref|XR_001752640.1| PREDICTED: Homo sapiens CTS t... 28.2 7.3
gi|1034601450|ref|XR_001752641.1| PREDICTED: Homo sapiens CTS t... 28.2 7.3
gi|1034601452|ref|XR_001752642.1| PREDICTED: Homo sapiens CTS t... 28.2 7.3
gi|1034601444|ref|XM_006721577.3| PREDICTED: Homo sapiens CTS t... 28.2 7.3
gi|1034601448|ref|XR_001752639.1| PREDICTED: Homo sapiens CTS t... 28.2 7.3
gi|1034601443|ref|XM_011524010.2| PREDICTED: Homo sapiens CTS t... 28.2 7.3
gi|219689062|ref|NM_025099.5| Homo sapiens CTS telomere mainten... 28.2 7.3
gi|379991134|ref|NR_046431.1| Homo sapiens CTS telomere mainten... 28.2 7.3
gi|68303554|ref|NM_014862.3| Homo sapiens aryl hydrocarbon rece... 28.2 7.3
gi|1034577346|ref|XR_001748459.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|1034572130|ref|XM_006718156.3| PREDICTED: Homo sapiens solut... 28.2 7.3
gi|1034572131|ref|XM_011519921.2| PREDICTED: Homo sapiens solut... 28.2 7.3
gi|1034572126|ref|XR_930845.2| PREDICTED: Homo sapiens solute c... 28.2 7.3
gi|157671930|ref|NM_178498.3| Homo sapiens solute carrier famil... 28.2 7.3
gi|1034570752|ref|XR_001747335.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|1034570751|ref|XR_001747334.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|1034664729|ref|XM_017014574.1| PREDICTED: Homo sapiens cell ... 28.2 7.3
gi|321267499|ref|NM_001202498.1| Homo sapiens ubiquitin conjuga... 28.2 7.3
gi|321267497|ref|NM_003344.3| Homo sapiens ubiquitin conjugatin... 28.2 7.3
gi|321267498|ref|NM_182697.2| Homo sapiens ubiquitin conjugatin... 28.2 7.3
gi|1034641391|ref|XM_017008689.1| PREDICTED: Homo sapiens solut... 28.2 7.3
gi|1034631054|ref|XR_001739992.1| PREDICTED: Homo sapiens oxyst... 28.2 7.3
gi|197333804|ref|NM_022776.4| Homo sapiens oxysterol binding pr... 28.2 7.3
gi|300068991|ref|NR_033947.1| Homo sapiens LIMD1 antisense RNA ... 28.2 7.3
gi|1034611029|ref|XM_006712193.3| PREDICTED: Homo sapiens SPEG ... 28.2 7.3
gi|1034611965|ref|XM_017003441.1| PREDICTED: Homo sapiens zinc ... 28.2 7.3
gi|1034611964|ref|XM_011510723.2| PREDICTED: Homo sapiens zinc ... 28.2 7.3
gi|1034611958|ref|XM_017003438.1| PREDICTED: Homo sapiens zinc ... 28.2 7.3
gi|1034611962|ref|XM_017003440.1| PREDICTED: Homo sapiens zinc ... 28.2 7.3
gi|1034611946|ref|XM_011510715.2| PREDICTED: Homo sapiens zinc ... 28.2 7.3
gi|1034611945|ref|XM_011510714.2| PREDICTED: Homo sapiens zinc ... 28.2 7.3
gi|1034611944|ref|XM_011510713.2| PREDICTED: Homo sapiens zinc ... 28.2 7.3
gi|371118729|ref|NR_045769.1| Homo sapiens activating transcrip... 28.2 7.3
gi|371118720|ref|NR_045768.1| Homo sapiens activating transcrip... 28.2 7.3
gi|368711268|ref|NM_001256090.1| Homo sapiens activating transc... 28.2 7.3
gi|371118828|ref|NR_045770.1| Homo sapiens activating transcrip... 28.2 7.3
gi|371118942|ref|NR_045772.1| Homo sapiens activating transcrip... 28.2 7.3
gi|368711270|ref|NM_001256091.1| Homo sapiens activating transc... 28.2 7.3
gi|371118923|ref|NR_045771.1| Homo sapiens activating transcrip... 28.2 7.3
gi|368711267|ref|NM_001880.3| Homo sapiens activating transcrip... 28.2 7.3
gi|371119043|ref|NR_045774.1| Homo sapiens activating transcrip... 28.2 7.3
gi|371119032|ref|NR_045773.1| Homo sapiens activating transcrip... 28.2 7.3
gi|368711274|ref|NM_001256093.1| Homo sapiens activating transc... 28.2 7.3
gi|368711272|ref|NM_001256092.1| Homo sapiens activating transc... 28.2 7.3
> gi|166197663|ref|NM_001237.3| Homo sapiens cyclin A2 (CCNA2),
mRNA
Length=2811
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 CCTGCAAACTGCAAAGTTGA 20
||||||||||||||||||||
Sbjct 1275 CCTGCAAACTGCAAAGTTGA 1294
> gi|444299621|ref|NM_001276318.1| Homo sapiens protein phosphatase
1 regulatory subunit 3E (PPP1R3E), mRNA
Length=4495
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 1 CCTGCAAACTGCAAAG 16
||||||||||||||||
Sbjct 3578 CCTGCAAACTGCAAAG 3563
> gi|316983159|ref|NM_001199984.1| Homo sapiens NADH dehydrogenase
(ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)
(NDUFS1), transcript variant 5, mRNA
Length=3393
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 5 CAAACTGCAAAGTTGA 20
||||||||||||||||
Sbjct 2462 CAAACTGCAAAGTTGA 2447
> gi|316983152|ref|NM_005006.6| Homo sapiens NADH dehydrogenase
(ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)
(NDUFS1), transcript variant 1, mRNA
Length=3473
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 5 CAAACTGCAAAGTTGA 20
||||||||||||||||
Sbjct 2542 CAAACTGCAAAGTTGA 2527
> gi|316983153|ref|NM_001199981.1| Homo sapiens NADH dehydrogenase
(ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)
(NDUFS1), transcript variant 2, mRNA
Length=3365
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 5 CAAACTGCAAAGTTGA 20
||||||||||||||||
Sbjct 2434 CAAACTGCAAAGTTGA 2419
> gi|316983155|ref|NM_001199983.1| Homo sapiens NADH dehydrogenase
(ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)
(NDUFS1), transcript variant 4, mRNA
Length=3381
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 5 CAAACTGCAAAGTTGA 20
||||||||||||||||
Sbjct 2450 CAAACTGCAAAGTTGA 2435
> gi|316983157|ref|NM_001199982.1| Homo sapiens NADH dehydrogenase
(ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)
(NDUFS1), transcript variant 3, mRNA
Length=3196
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 5 CAAACTGCAAAGTTGA 20
||||||||||||||||
Sbjct 2265 CAAACTGCAAAGTTGA 2250
> gi|1034614223|ref|XM_017004188.1| PREDICTED: Homo sapiens NADH:ubiquinone
oxidoreductase core subunit S1 (NDUFS1), transcript
variant X1, mRNA
Length=4540
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 5 CAAACTGCAAAGTTGA 20
||||||||||||||||
Sbjct 2501 CAAACTGCAAAGTTGA 2486
> gi|1034688069|ref|XR_921974.2| PREDICTED: Homo sapiens uncharacterized
LOC102724948 (LOC102724948), transcript variant X3,
ncRNA
Length=1994
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 GCAAACTGCAAAGTT 18
|||||||||||||||
Sbjct 1758 GCAAACTGCAAAGTT 1744
> gi|1034688068|ref|XR_431398.3| PREDICTED: Homo sapiens uncharacterized
LOC102724948 (LOC102724948), transcript variant X2,
ncRNA
Length=2062
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 GCAAACTGCAAAGTT 18
|||||||||||||||
Sbjct 1762 GCAAACTGCAAAGTT 1748
> gi|1034688067|ref|XR_001742218.1| PREDICTED: Homo sapiens uncharacterized
LOC102724948 (LOC102724948), transcript variant
X1, ncRNA
Length=2293
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 GCAAACTGCAAAGTT 18
|||||||||||||||
Sbjct 1773 GCAAACTGCAAAGTT 1759
> gi|349501059|ref|NM_001274.5| Homo sapiens checkpoint kinase
1 (CHEK1), transcript variant 3, mRNA
Length=3517
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 1 CCTGCAAACTGCAAA 15
|||||||||||||||
Sbjct 1753 CCTGCAAACTGCAAA 1767
> gi|349501083|ref|NR_045205.1| Homo sapiens checkpoint kinase
1 (CHEK1), transcript variant 6, non-coding RNA
Length=3711
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 1 CCTGCAAACTGCAAA 15
|||||||||||||||
Sbjct 1947 CCTGCAAACTGCAAA 1961
> gi|1034571804|ref|XM_011542563.2| PREDICTED: Homo sapiens checkpoint
kinase 1 (CHEK1), transcript variant X5, mRNA
Length=3468
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 1 CCTGCAAACTGCAAA 15
|||||||||||||||
Sbjct 1727 CCTGCAAACTGCAAA 1741
> gi|1034571803|ref|XM_011542562.2| PREDICTED: Homo sapiens checkpoint
kinase 1 (CHEK1), transcript variant X4, mRNA
Length=3403
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 1 CCTGCAAACTGCAAA 15
|||||||||||||||
Sbjct 1662 CCTGCAAACTGCAAA 1676
> gi|349501062|ref|NR_045204.1| Homo sapiens checkpoint kinase
1 (CHEK1), transcript variant 5, non-coding RNA
Length=3950
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 1 CCTGCAAACTGCAAA 15
|||||||||||||||
Sbjct 2186 CCTGCAAACTGCAAA 2200
> gi|349501060|ref|NM_001244846.1| Homo sapiens checkpoint kinase
1 (CHEK1), transcript variant 4, mRNA
Length=4072
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 1 CCTGCAAACTGCAAA 15
|||||||||||||||
Sbjct 2308 CCTGCAAACTGCAAA 2322
> gi|349501056|ref|NM_001114122.2| Homo sapiens checkpoint kinase
1 (CHEK1), transcript variant 1, mRNA
Length=4174
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 1 CCTGCAAACTGCAAA 15
|||||||||||||||
Sbjct 2410 CCTGCAAACTGCAAA 2424
> gi|1034654202|ref|XM_011515136.2| PREDICTED: Homo sapiens ATP
binding cassette subfamily A member 13 (ABCA13), transcript
variant X9, mRNA
Length=16586
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 GCAAACTGCAAAGTT 18
|||||||||||||||
Sbjct 5726 GCAAACTGCAAAGTT 5712
> gi|597709764|ref|NM_152701.4| Homo sapiens ATP binding cassette
subfamily A member 13 (ABCA13), mRNA
Length=17207
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 GCAAACTGCAAAGTT 18
|||||||||||||||
Sbjct 6329 GCAAACTGCAAAGTT 6315
> gi|1034654215|ref|XM_011515143.2| PREDICTED: Homo sapiens ATP
binding cassette subfamily A member 13 (ABCA13), transcript
variant X19, mRNA
Length=14409
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 GCAAACTGCAAAGTT 18
|||||||||||||||
Sbjct 6361 GCAAACTGCAAAGTT 6347
> gi|1034654216|ref|XM_011515144.2| PREDICTED: Homo sapiens ATP
binding cassette subfamily A member 13 (ABCA13), transcript
variant X20, mRNA
Length=12228
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 GCAAACTGCAAAGTT 18
|||||||||||||||
Sbjct 6361 GCAAACTGCAAAGTT 6347
> gi|1034654209|ref|XM_017011767.1| PREDICTED: Homo sapiens ATP
binding cassette subfamily A member 13 (ABCA13), transcript
variant X15, mRNA
Length=13443
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 GCAAACTGCAAAGTT 18
|||||||||||||||
Sbjct 6361 GCAAACTGCAAAGTT 6347
> gi|1034654211|ref|XM_017011768.1| PREDICTED: Homo sapiens ATP
binding cassette subfamily A member 13 (ABCA13), transcript
variant X16, mRNA
Length=13296
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 GCAAACTGCAAAGTT 18
|||||||||||||||
Sbjct 6361 GCAAACTGCAAAGTT 6347
> gi|1034654208|ref|XM_011515139.2| PREDICTED: Homo sapiens ATP
binding cassette subfamily A member 13 (ABCA13), transcript
variant X14, mRNA
Length=13528
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 GCAAACTGCAAAGTT 18
|||||||||||||||
Sbjct 6361 GCAAACTGCAAAGTT 6347
> gi|1034654207|ref|XM_011515138.2| PREDICTED: Homo sapiens ATP
binding cassette subfamily A member 13 (ABCA13), transcript
variant X13, mRNA
Length=13582
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 GCAAACTGCAAAGTT 18
|||||||||||||||
Sbjct 6361 GCAAACTGCAAAGTT 6347
> gi|1034654206|ref|XR_926919.2| PREDICTED: Homo sapiens ATP binding
cassette subfamily A member 13 (ABCA13), transcript variant
X12, misc_RNA
Length=13604
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 GCAAACTGCAAAGTT 18
|||||||||||||||
Sbjct 6361 GCAAACTGCAAAGTT 6347
> gi|1034654205|ref|XM_011515137.2| PREDICTED: Homo sapiens ATP
binding cassette subfamily A member 13 (ABCA13), transcript
variant X11, mRNA
Length=13950
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 GCAAACTGCAAAGTT 18
|||||||||||||||
Sbjct 6361 GCAAACTGCAAAGTT 6347
> gi|1034654201|ref|XM_011515134.2| PREDICTED: Homo sapiens ATP
binding cassette subfamily A member 13 (ABCA13), transcript
variant X8, mRNA
Length=15935
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 GCAAACTGCAAAGTT 18
|||||||||||||||
Sbjct 6361 GCAAACTGCAAAGTT 6347
> gi|1034654199|ref|XR_001744555.1| PREDICTED: Homo sapiens ATP
binding cassette subfamily A member 13 (ABCA13), transcript
variant X6, misc_RNA
Length=16068
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 GCAAACTGCAAAGTT 18
|||||||||||||||
Sbjct 6361 GCAAACTGCAAAGTT 6347
> gi|1034654204|ref|XR_926916.2| PREDICTED: Homo sapiens ATP binding
cassette subfamily A member 13 (ABCA13), transcript variant
X10, misc_RNA
Length=14962
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 GCAAACTGCAAAGTT 18
|||||||||||||||
Sbjct 6361 GCAAACTGCAAAGTT 6347
> gi|1034654200|ref|XR_926915.2| PREDICTED: Homo sapiens ATP binding
cassette subfamily A member 13 (ABCA13), transcript variant
X7, misc_RNA
Length=15113
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 GCAAACTGCAAAGTT 18
|||||||||||||||
Sbjct 6361 GCAAACTGCAAAGTT 6347
> gi|1034654198|ref|XR_926914.2| PREDICTED: Homo sapiens ATP binding
cassette subfamily A member 13 (ABCA13), transcript variant
X5, misc_RNA
Length=15116
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 GCAAACTGCAAAGTT 18
|||||||||||||||
Sbjct 6361 GCAAACTGCAAAGTT 6347
> gi|1034654197|ref|XM_011515133.2| PREDICTED: Homo sapiens ATP
binding cassette subfamily A member 13 (ABCA13), transcript
variant X4, mRNA
Length=17083
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 GCAAACTGCAAAGTT 18
|||||||||||||||
Sbjct 6361 GCAAACTGCAAAGTT 6347
> gi|1034654196|ref|XM_011515132.2| PREDICTED: Homo sapiens ATP
binding cassette subfamily A member 13 (ABCA13), transcript
variant X3, mRNA
Length=17128
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 GCAAACTGCAAAGTT 18
|||||||||||||||
Sbjct 6361 GCAAACTGCAAAGTT 6347
> gi|1034654195|ref|XM_011515131.2| PREDICTED: Homo sapiens ATP
binding cassette subfamily A member 13 (ABCA13), transcript
variant X2, mRNA
Length=17128
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 GCAAACTGCAAAGTT 18
|||||||||||||||
Sbjct 6361 GCAAACTGCAAAGTT 6347
> gi|1034654194|ref|XM_011515130.2| PREDICTED: Homo sapiens ATP
binding cassette subfamily A member 13 (ABCA13), transcript
variant X1, mRNA
Length=17221
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 GCAAACTGCAAAGTT 18
|||||||||||||||
Sbjct 6361 GCAAACTGCAAAGTT 6347
> gi|1034654218|ref|XM_011515146.2| PREDICTED: Homo sapiens ATP
binding cassette subfamily A member 13 (ABCA13), transcript
variant X22, mRNA
Length=11444
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 GCAAACTGCAAAGTT 18
|||||||||||||||
Sbjct 6362 GCAAACTGCAAAGTT 6348
> gi|1034654217|ref|XM_011515145.2| PREDICTED: Homo sapiens ATP
binding cassette subfamily A member 13 (ABCA13), transcript
variant X21, mRNA
Length=13191
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 GCAAACTGCAAAGTT 18
|||||||||||||||
Sbjct 6362 GCAAACTGCAAAGTT 6348
> gi|1034654214|ref|XM_011515142.2| PREDICTED: Homo sapiens ATP
binding cassette subfamily A member 13 (ABCA13), transcript
variant X18, mRNA
Length=12981
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 GCAAACTGCAAAGTT 18
|||||||||||||||
Sbjct 6362 GCAAACTGCAAAGTT 6348
> gi|1034654213|ref|XM_011515141.2| PREDICTED: Homo sapiens ATP
binding cassette subfamily A member 13 (ABCA13), transcript
variant X17, mRNA
Length=13074
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 GCAAACTGCAAAGTT 18
|||||||||||||||
Sbjct 6362 GCAAACTGCAAAGTT 6348
> gi|1034654219|ref|XM_011515147.2| PREDICTED: Homo sapiens ATP
binding cassette subfamily A member 13 (ABCA13), transcript
variant X23, mRNA
Length=11423
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 GCAAACTGCAAAGTT 18
|||||||||||||||
Sbjct 6363 GCAAACTGCAAAGTT 6349
> gi|1034654221|ref|XM_011515149.2| PREDICTED: Homo sapiens ATP
binding cassette subfamily A member 13 (ABCA13), transcript
variant X25, mRNA
Length=10294
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 GCAAACTGCAAAGTT 18
|||||||||||||||
Sbjct 6364 GCAAACTGCAAAGTT 6350
> gi|1034654220|ref|XM_011515148.2| PREDICTED: Homo sapiens ATP
binding cassette subfamily A member 13 (ABCA13), transcript
variant X24, mRNA
Length=14051
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 GCAAACTGCAAAGTT 18
|||||||||||||||
Sbjct 6364 GCAAACTGCAAAGTT 6350
> gi|1034654222|ref|XM_017011769.1| PREDICTED: Homo sapiens ATP
binding cassette subfamily A member 13 (ABCA13), transcript
variant X26, mRNA
Length=9159
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 GCAAACTGCAAAGTT 18
|||||||||||||||
Sbjct 6365 GCAAACTGCAAAGTT 6351
> gi|1034639744|ref|XR_938730.2| PREDICTED: Homo sapiens coiled-coil
domain containing 158 (CCDC158), transcript variant X15,
misc_RNA
Length=2944
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 2 CTGCAAACTGCAAAG 16
|||||||||||||||
Sbjct 2780 CTGCAAACTGCAAAG 2766
> gi|1034639743|ref|XR_938729.2| PREDICTED: Homo sapiens coiled-coil
domain containing 158 (CCDC158), transcript variant X14,
misc_RNA
Length=3232
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 2 CTGCAAACTGCAAAG 16
|||||||||||||||
Sbjct 2744 CTGCAAACTGCAAAG 2730
> gi|1034639745|ref|XM_017008161.1| PREDICTED: Homo sapiens coiled-coil
domain containing 158 (CCDC158), transcript variant
X16, mRNA
Length=2830
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 2 CTGCAAACTGCAAAG 16
|||||||||||||||
Sbjct 1809 CTGCAAACTGCAAAG 1795
> gi|112420967|ref|NM_001042784.1| Homo sapiens coiled-coil domain
containing 158 (CCDC158), mRNA
Length=3626
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 2 CTGCAAACTGCAAAG 16
|||||||||||||||
Sbjct 2617 CTGCAAACTGCAAAG 2603
> gi|767931825|ref|XM_011531913.1| PREDICTED: Homo sapiens coiled-coil
domain containing 158 (CCDC158), transcript variant
X8, mRNA
Length=3653
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 2 CTGCAAACTGCAAAG 16
|||||||||||||||
Sbjct 2632 CTGCAAACTGCAAAG 2618
> gi|1034639735|ref|XM_011531910.2| PREDICTED: Homo sapiens coiled-coil
domain containing 158 (CCDC158), transcript variant
X4, mRNA
Length=4346
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 2 CTGCAAACTGCAAAG 16
|||||||||||||||
Sbjct 3325 CTGCAAACTGCAAAG 3311
> gi|1034639736|ref|XM_017008160.1| PREDICTED: Homo sapiens coiled-coil
domain containing 158 (CCDC158), transcript variant
X5, mRNA
Length=4379
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 2 CTGCAAACTGCAAAG 16
|||||||||||||||
Sbjct 3358 CTGCAAACTGCAAAG 3344
> gi|1034639733|ref|XM_011531908.2| PREDICTED: Homo sapiens coiled-coil
domain containing 158 (CCDC158), transcript variant
X2, mRNA
Length=3869
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 2 CTGCAAACTGCAAAG 16
|||||||||||||||
Sbjct 2848 CTGCAAACTGCAAAG 2834
> gi|1034639732|ref|XM_006714204.3| PREDICTED: Homo sapiens coiled-coil
domain containing 158 (CCDC158), transcript variant
X1, mRNA
Length=3765
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 2 CTGCAAACTGCAAAG 16
|||||||||||||||
Sbjct 2744 CTGCAAACTGCAAAG 2730
> gi|1034639740|ref|XM_005262974.4| PREDICTED: Homo sapiens coiled-coil
domain containing 158 (CCDC158), transcript variant
X10, mRNA
Length=3753
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 2 CTGCAAACTGCAAAG 16
|||||||||||||||
Sbjct 2744 CTGCAAACTGCAAAG 2730
> gi|1034639742|ref|XM_011531916.2| PREDICTED: Homo sapiens coiled-coil
domain containing 158 (CCDC158), transcript variant
X12, mRNA
Length=3547
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 2 CTGCAAACTGCAAAG 16
|||||||||||||||
Sbjct 2526 CTGCAAACTGCAAAG 2512
> gi|1034639739|ref|XM_011531914.2| PREDICTED: Homo sapiens coiled-coil
domain containing 158 (CCDC158), transcript variant
X9, mRNA
Length=3722
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 2 CTGCAAACTGCAAAG 16
|||||||||||||||
Sbjct 2701 CTGCAAACTGCAAAG 2687
> gi|1034639741|ref|XM_011531915.2| PREDICTED: Homo sapiens coiled-coil
domain containing 158 (CCDC158), transcript variant
X11, mRNA
Length=3613
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 2 CTGCAAACTGCAAAG 16
|||||||||||||||
Sbjct 2592 CTGCAAACTGCAAAG 2578
> gi|1034639738|ref|XM_011531912.2| PREDICTED: Homo sapiens coiled-coil
domain containing 158 (CCDC158), transcript variant
X6, mRNA
Length=3625
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 2 CTGCAAACTGCAAAG 16
|||||||||||||||
Sbjct 2604 CTGCAAACTGCAAAG 2590
> gi|767931834|ref|XM_011531917.1| PREDICTED: Homo sapiens coiled-coil
domain containing 158 (CCDC158), transcript variant
X13, mRNA
Length=3590
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 2 CTGCAAACTGCAAAG 16
|||||||||||||||
Sbjct 2569 CTGCAAACTGCAAAG 2555
> gi|767931821|ref|XM_011531911.1| PREDICTED: Homo sapiens coiled-coil
domain containing 158 (CCDC158), transcript variant
X7, mRNA
Length=3729
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 2 CTGCAAACTGCAAAG 16
|||||||||||||||
Sbjct 2708 CTGCAAACTGCAAAG 2694
> gi|1034639734|ref|XM_011531909.2| PREDICTED: Homo sapiens coiled-coil
domain containing 158 (CCDC158), transcript variant
X3, mRNA
Length=3885
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 2 CTGCAAACTGCAAAG 16
|||||||||||||||
Sbjct 2864 CTGCAAACTGCAAAG 2850
> gi|1034618690|ref|XR_939794.2| PREDICTED: Homo sapiens uncharacterized
LOC102724948 (LOC102724948), transcript variant X3,
ncRNA
Length=1994
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 GCAAACTGCAAAGTT 18
|||||||||||||||
Sbjct 1758 GCAAACTGCAAAGTT 1744
> gi|1034618689|ref|XR_427005.3| PREDICTED: Homo sapiens uncharacterized
LOC102724948 (LOC102724948), transcript variant X2,
ncRNA
Length=2062
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 GCAAACTGCAAAGTT 18
|||||||||||||||
Sbjct 1762 GCAAACTGCAAAGTT 1748
> gi|1034618688|ref|XR_001739319.1| PREDICTED: Homo sapiens uncharacterized
LOC102724948 (LOC102724948), transcript variant
X1, ncRNA
Length=2293
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 4 GCAAACTGCAAAGTT 18
|||||||||||||||
Sbjct 1773 GCAAACTGCAAAGTT 1759
> gi|1034681902|ref|XR_001732043.1| PREDICTED: Homo sapiens uncharacterized
LOC105369576 (LOC105369576), transcript variant
X3, ncRNA
Length=3327
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 3 TGCAAACTGCAAAG 16
||||||||||||||
Sbjct 2589 TGCAAACTGCAAAG 2602
> gi|1034680312|ref|XR_001731230.1| PREDICTED: Homo sapiens uncharacterized
LOC107984195 (LOC107984195), transcript variant
X2, ncRNA
Length=2494
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 GCAAACTGCAAAGT 17
||||||||||||||
Sbjct 1102 GCAAACTGCAAAGT 1089
> gi|1034680311|ref|XR_001731229.1| PREDICTED: Homo sapiens uncharacterized
LOC107984195 (LOC107984195), transcript variant
X1, ncRNA
Length=2565
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 GCAAACTGCAAAGT 17
||||||||||||||
Sbjct 1102 GCAAACTGCAAAGT 1089
> gi|1034600666|ref|XM_011525088.2| PREDICTED: Homo sapiens trinucleotide
repeat containing 6C (TNRC6C), transcript variant
X6, mRNA
Length=6761
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 CTGCAAACTGCAAA 15
||||||||||||||
Sbjct 3674 CTGCAAACTGCAAA 3661
> gi|217416331|ref|NM_001142640.1| Homo sapiens trinucleotide repeat
containing 6C (TNRC6C), transcript variant 1, mRNA
Length=9794
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 CTGCAAACTGCAAA 15
||||||||||||||
Sbjct 3976 CTGCAAACTGCAAA 3963
> gi|217416330|ref|NM_018996.3| Homo sapiens trinucleotide repeat
containing 6C (TNRC6C), transcript variant 2, mRNA
Length=9686
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 CTGCAAACTGCAAA 15
||||||||||||||
Sbjct 3985 CTGCAAACTGCAAA 3972
> gi|1034600664|ref|XM_017024908.1| PREDICTED: Homo sapiens trinucleotide
repeat containing 6C (TNRC6C), transcript variant
X5, mRNA
Length=13835
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 CTGCAAACTGCAAA 15
||||||||||||||
Sbjct 9412 CTGCAAACTGCAAA 9399
> gi|1034600667|ref|XM_006722000.3| PREDICTED: Homo sapiens trinucleotide
repeat containing 6C (TNRC6C), transcript variant
X7, mRNA
Length=13934
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 CTGCAAACTGCAAA 15
||||||||||||||
Sbjct 9628 CTGCAAACTGCAAA 9615
> gi|1034600662|ref|XM_006721997.3| PREDICTED: Homo sapiens trinucleotide
repeat containing 6C (TNRC6C), transcript variant
X4, mRNA
Length=13910
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 CTGCAAACTGCAAA 15
||||||||||||||
Sbjct 9487 CTGCAAACTGCAAA 9474
> gi|1034600656|ref|XM_006721996.3| PREDICTED: Homo sapiens trinucleotide
repeat containing 6C (TNRC6C), transcript variant
X1, mRNA
Length=14060
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 CTGCAAACTGCAAA 15
||||||||||||||
Sbjct 9637 CTGCAAACTGCAAA 9624
> gi|1034600658|ref|XM_017024906.1| PREDICTED: Homo sapiens trinucleotide
repeat containing 6C (TNRC6C), transcript variant
X2, mRNA
Length=15410
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 CTGCAAACTGCAAA 15
||||||||||||||
Sbjct 9628 CTGCAAACTGCAAA 9615
> gi|1034600660|ref|XM_017024907.1| PREDICTED: Homo sapiens trinucleotide
repeat containing 6C (TNRC6C), transcript variant
X3, mRNA
Length=15302
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 CTGCAAACTGCAAA 15
||||||||||||||
Sbjct 9637 CTGCAAACTGCAAA 9624
> gi|1034601453|ref|XR_001752643.1| PREDICTED: Homo sapiens CTS
telomere maintenance complex component 1 (CTC1), transcript
variant X12, misc_RNA
Length=3817
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 CCTGCAAACTGCAA 14
||||||||||||||
Sbjct 3776 CCTGCAAACTGCAA 3763
> gi|1034601451|ref|XM_011524011.2| PREDICTED: Homo sapiens CTS
telomere maintenance complex component 1 (CTC1), transcript
variant X9, mRNA
Length=6818
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 CCTGCAAACTGCAA 14
||||||||||||||
Sbjct 3176 CCTGCAAACTGCAA 3163
> gi|1034601447|ref|XR_429824.3| PREDICTED: Homo sapiens CTS telomere
maintenance complex component 1 (CTC1), transcript variant
X5, misc_RNA
Length=6988
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 CCTGCAAACTGCAA 14
||||||||||||||
Sbjct 3346 CCTGCAAACTGCAA 3333
> gi|1034601449|ref|XR_001752640.1| PREDICTED: Homo sapiens CTS
telomere maintenance complex component 1 (CTC1), transcript
variant X7, misc_RNA
Length=7009
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 CCTGCAAACTGCAA 14
||||||||||||||
Sbjct 3365 CCTGCAAACTGCAA 3352
> gi|1034601450|ref|XR_001752641.1| PREDICTED: Homo sapiens CTS
telomere maintenance complex component 1 (CTC1), transcript
variant X8, misc_RNA
Length=6944
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 CCTGCAAACTGCAA 14
||||||||||||||
Sbjct 3300 CCTGCAAACTGCAA 3287
> gi|1034601452|ref|XR_001752642.1| PREDICTED: Homo sapiens CTS
telomere maintenance complex component 1 (CTC1), transcript
variant X10, misc_RNA
Length=6794
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 CCTGCAAACTGCAA 14
||||||||||||||
Sbjct 3152 CCTGCAAACTGCAA 3139
> gi|1034601444|ref|XM_006721577.3| PREDICTED: Homo sapiens CTS
telomere maintenance complex component 1 (CTC1), transcript
variant X2, mRNA
Length=6924
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 CCTGCAAACTGCAA 14
||||||||||||||
Sbjct 3282 CCTGCAAACTGCAA 3269
> gi|1034601448|ref|XR_001752639.1| PREDICTED: Homo sapiens CTS
telomere maintenance complex component 1 (CTC1), transcript
variant X6, misc_RNA
Length=6861
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 CCTGCAAACTGCAA 14
||||||||||||||
Sbjct 3217 CCTGCAAACTGCAA 3204
> gi|1034601443|ref|XM_011524010.2| PREDICTED: Homo sapiens CTS
telomere maintenance complex component 1 (CTC1), transcript
variant X1, mRNA
Length=6948
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 CCTGCAAACTGCAA 14
||||||||||||||
Sbjct 3306 CCTGCAAACTGCAA 3293
> gi|219689062|ref|NM_025099.5| Homo sapiens CTS telomere maintenance
complex component 1 (CTC1), transcript variant 1, mRNA
Length=7089
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 CCTGCAAACTGCAA 14
||||||||||||||
Sbjct 3427 CCTGCAAACTGCAA 3414
> gi|379991134|ref|NR_046431.1| Homo sapiens CTS telomere maintenance
complex component 1 (CTC1), transcript variant 2, non-coding
RNA
Length=6919
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 CCTGCAAACTGCAA 14
||||||||||||||
Sbjct 3257 CCTGCAAACTGCAA 3244
> gi|68303554|ref|NM_014862.3| Homo sapiens aryl hydrocarbon receptor
nuclear translocator 2 (ARNT2), mRNA
Length=6576
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 AAACTGCAAAGTTG 19
||||||||||||||
Sbjct 4275 AAACTGCAAAGTTG 4262
> gi|1034577346|ref|XR_001748459.1| PREDICTED: Homo sapiens uncharacterized
LOC105369576 (LOC105369576), transcript variant
X3, ncRNA
Length=3328
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 3 TGCAAACTGCAAAG 16
||||||||||||||
Sbjct 2590 TGCAAACTGCAAAG 2603
> gi|1034572130|ref|XM_006718156.3| PREDICTED: Homo sapiens solute
carrier family 5 member 12 (SLC5A12), transcript variant
X5, mRNA
Length=2521
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 CAAACTGCAAAGTT 18
||||||||||||||
Sbjct 578 CAAACTGCAAAGTT 565
> gi|1034572131|ref|XM_011519921.2| PREDICTED: Homo sapiens solute
carrier family 5 member 12 (SLC5A12), transcript variant
X6, mRNA
Length=2526
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 CAAACTGCAAAGTT 18
||||||||||||||
Sbjct 579 CAAACTGCAAAGTT 566
> gi|1034572126|ref|XR_930845.2| PREDICTED: Homo sapiens solute
carrier family 5 member 12 (SLC5A12), transcript variant X2,
misc_RNA
Length=6483
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 CAAACTGCAAAGTT 18
||||||||||||||
Sbjct 578 CAAACTGCAAAGTT 565
> gi|157671930|ref|NM_178498.3| Homo sapiens solute carrier family
5 member 12 (SLC5A12), mRNA
Length=6253
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 CAAACTGCAAAGTT 18
||||||||||||||
Sbjct 339 CAAACTGCAAAGTT 326
> gi|1034570752|ref|XR_001747335.1| PREDICTED: Homo sapiens uncharacterized
LOC107984195 (LOC107984195), transcript variant
X2, ncRNA
Length=2494
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 GCAAACTGCAAAGT 17
||||||||||||||
Sbjct 1102 GCAAACTGCAAAGT 1089
> gi|1034570751|ref|XR_001747334.1| PREDICTED: Homo sapiens uncharacterized
LOC107984195 (LOC107984195), transcript variant
X1, ncRNA
Length=2565
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 GCAAACTGCAAAGT 17
||||||||||||||
Sbjct 1102 GCAAACTGCAAAGT 1089
> gi|1034664729|ref|XM_017014574.1| PREDICTED: Homo sapiens cell
division cycle 26 (CDC26), transcript variant X2, mRNA
Length=1304
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 CTGCAAACTGCAAA 15
||||||||||||||
Sbjct 635 CTGCAAACTGCAAA 622
> gi|321267499|ref|NM_001202498.1| Homo sapiens ubiquitin conjugating
enzyme E2 H (UBE2H), transcript variant 3, mRNA
Length=4778
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 GCAAACTGCAAAGT 17
||||||||||||||
Sbjct 2609 GCAAACTGCAAAGT 2596
> gi|321267497|ref|NM_003344.3| Homo sapiens ubiquitin conjugating
enzyme E2 H (UBE2H), transcript variant 1, mRNA
Length=5174
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 GCAAACTGCAAAGT 17
||||||||||||||
Sbjct 3005 GCAAACTGCAAAGT 2992
> gi|321267498|ref|NM_182697.2| Homo sapiens ubiquitin conjugating
enzyme E2 H (UBE2H), transcript variant 2, mRNA
Length=5081
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 GCAAACTGCAAAGT 17
||||||||||||||
Sbjct 2912 GCAAACTGCAAAGT 2899
> gi|1034641391|ref|XM_017008689.1| PREDICTED: Homo sapiens solute
carrier family 10 member 7 (SLC10A7), transcript variant
X6, mRNA
Length=4229
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 6 AAACTGCAAAGTTG 19
||||||||||||||
Sbjct 4061 AAACTGCAAAGTTG 4074
> gi|1034631054|ref|XR_001739992.1| PREDICTED: Homo sapiens oxysterol
binding protein like 11 (OSBPL11), transcript variant
X1, misc_RNA
Length=4024
Score = 28.2 bits (14), Expect = 7.3
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 CCTGCAAACTGCAAAGTT 18
||||||| ||||||||||
Sbjct 951 CCTGCAAGCTGCAAAGTT 934
> gi|197333804|ref|NM_022776.4| Homo sapiens oxysterol binding
protein like 11 (OSBPL11), mRNA
Length=4651
Score = 28.2 bits (14), Expect = 7.3
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 CCTGCAAACTGCAAAGTT 18
||||||| ||||||||||
Sbjct 1066 CCTGCAAGCTGCAAAGTT 1049
> gi|300068991|ref|NR_033947.1| Homo sapiens LIMD1 antisense RNA
1 (LIMD1-AS1), long non-coding RNA
Length=2316
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 3 TGCAAACTGCAAAG 16
||||||||||||||
Sbjct 79 TGCAAACTGCAAAG 92
> gi|1034611029|ref|XM_006712193.3| PREDICTED: Homo sapiens SPEG
complex locus (SPEG), transcript variant X12, mRNA
Length=11511
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 CCTGCAAACTGCAA 14
||||||||||||||
Sbjct 344 CCTGCAAACTGCAA 357
> gi|1034611965|ref|XM_017003441.1| PREDICTED: Homo sapiens zinc
finger protein 385B (ZNF385B), transcript variant X16, mRNA
Length=4637
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 CCTGCAAACTGCAA 14
||||||||||||||
Sbjct 1392 CCTGCAAACTGCAA 1379
> gi|1034611964|ref|XM_011510723.2| PREDICTED: Homo sapiens zinc
finger protein 385B (ZNF385B), transcript variant X15, mRNA
Length=4684
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 CCTGCAAACTGCAA 14
||||||||||||||
Sbjct 1400 CCTGCAAACTGCAA 1387
> gi|1034611958|ref|XM_017003438.1| PREDICTED: Homo sapiens zinc
finger protein 385B (ZNF385B), transcript variant X12, mRNA
Length=8087
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 TGCAAACTGCAAAG 16
||||||||||||||
Sbjct 4230 TGCAAACTGCAAAG 4217
> gi|1034611962|ref|XM_017003440.1| PREDICTED: Homo sapiens zinc
finger protein 385B (ZNF385B), transcript variant X14, mRNA
Length=6124
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 CCTGCAAACTGCAA 14
||||||||||||||
Sbjct 1334 CCTGCAAACTGCAA 1321
> gi|1034611946|ref|XM_011510715.2| PREDICTED: Homo sapiens zinc
finger protein 385B (ZNF385B), transcript variant X3, mRNA
Length=6332
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 CCTGCAAACTGCAA 14
||||||||||||||
Sbjct 1360 CCTGCAAACTGCAA 1347
> gi|1034611945|ref|XM_011510714.2| PREDICTED: Homo sapiens zinc
finger protein 385B (ZNF385B), transcript variant X2, mRNA
Length=6379
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 CCTGCAAACTGCAA 14
||||||||||||||
Sbjct 1365 CCTGCAAACTGCAA 1352
> gi|1034611944|ref|XM_011510713.2| PREDICTED: Homo sapiens zinc
finger protein 385B (ZNF385B), transcript variant X1, mRNA
Length=6429
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 CCTGCAAACTGCAA 14
||||||||||||||
Sbjct 1376 CCTGCAAACTGCAA 1363
> gi|371118729|ref|NR_045769.1| Homo sapiens activating transcription
factor 2 (ATF2), transcript variant 8, non-coding RNA
Length=4422
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 CAAACTGCAAAGTT 18
||||||||||||||
Sbjct 2908 CAAACTGCAAAGTT 2921
> gi|371118720|ref|NR_045768.1| Homo sapiens activating transcription
factor 2 (ATF2), transcript variant 7, non-coding RNA
Length=4390
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 CAAACTGCAAAGTT 18
||||||||||||||
Sbjct 2876 CAAACTGCAAAGTT 2889
> gi|368711268|ref|NM_001256090.1| Homo sapiens activating transcription
factor 2 (ATF2), transcript variant 2, mRNA
Length=4228
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 CAAACTGCAAAGTT 18
||||||||||||||
Sbjct 2714 CAAACTGCAAAGTT 2727
> gi|371118828|ref|NR_045770.1| Homo sapiens activating transcription
factor 2 (ATF2), transcript variant 9, non-coding RNA
Length=4275
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 CAAACTGCAAAGTT 18
||||||||||||||
Sbjct 2761 CAAACTGCAAAGTT 2774
> gi|371118942|ref|NR_045772.1| Homo sapiens activating transcription
factor 2 (ATF2), transcript variant 11, non-coding RNA
Length=4205
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 CAAACTGCAAAGTT 18
||||||||||||||
Sbjct 2691 CAAACTGCAAAGTT 2704
> gi|368711270|ref|NM_001256091.1| Homo sapiens activating transcription
factor 2 (ATF2), transcript variant 3, mRNA
Length=4153
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 CAAACTGCAAAGTT 18
||||||||||||||
Sbjct 2639 CAAACTGCAAAGTT 2652
> gi|371118923|ref|NR_045771.1| Homo sapiens activating transcription
factor 2 (ATF2), transcript variant 10, non-coding RNA
Length=4267
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 CAAACTGCAAAGTT 18
||||||||||||||
Sbjct 2753 CAAACTGCAAAGTT 2766
> gi|368711267|ref|NM_001880.3| Homo sapiens activating transcription
factor 2 (ATF2), transcript variant 1, mRNA
Length=4193
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 CAAACTGCAAAGTT 18
||||||||||||||
Sbjct 2679 CAAACTGCAAAGTT 2692
> gi|371119043|ref|NR_045774.1| Homo sapiens activating transcription
factor 2 (ATF2), transcript variant 13, non-coding RNA
Length=4078
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 CAAACTGCAAAGTT 18
||||||||||||||
Sbjct 2564 CAAACTGCAAAGTT 2577
> gi|371119032|ref|NR_045773.1| Homo sapiens activating transcription
factor 2 (ATF2), transcript variant 12, non-coding RNA
Length=4170
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 CAAACTGCAAAGTT 18
||||||||||||||
Sbjct 2656 CAAACTGCAAAGTT 2669
> gi|368711274|ref|NM_001256093.1| Homo sapiens activating transcription
factor 2 (ATF2), transcript variant 5, mRNA
Length=4128
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 CAAACTGCAAAGTT 18
||||||||||||||
Sbjct 2614 CAAACTGCAAAGTT 2627
> gi|368711272|ref|NM_001256092.1| Homo sapiens activating transcription
factor 2 (ATF2), transcript variant 4, mRNA
Length=4096
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 5 CAAACTGCAAAGTT 18
||||||||||||||
Sbjct 2582 CAAACTGCAAAGTT 2595
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 2337180340
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2