BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= CCTCGGCTCCTGCTGCACCAAGGTACCTTGGTGCAGCAGGAGCCGAGG (evalue = 10)
Length=48
Score E
Sequences producing significant alignments: (Bits) Value
gi|767967525|ref|XM_011544773.1| PREDICTED: Homo sapiens G prot... 42.1 0.004
gi|148539875|ref|NM_001619.3| Homo sapiens adrenergic, beta, re... 42.1 0.004
gi|1034572124|ref|XR_001747779.1| PREDICTED: Homo sapiens G pro... 42.1 0.004
gi|666335581|ref|NM_001301018.1| Homo sapiens actin binding LIM... 34.2 0.92
gi|1034644234|ref|XM_017009238.1| PREDICTED: Homo sapiens actin... 34.2 0.92
gi|530380447|ref|XM_005268396.1| PREDICTED: Homo sapiens actin ... 34.2 0.92
gi|530380445|ref|XM_005268395.1| PREDICTED: Homo sapiens actin ... 34.2 0.92
gi|530380443|ref|XM_005268394.1| PREDICTED: Homo sapiens actin ... 34.2 0.92
gi|530380441|ref|XM_005268393.1| PREDICTED: Homo sapiens actin ... 34.2 0.92
gi|530380439|ref|XM_005268392.1| PREDICTED: Homo sapiens actin ... 34.2 0.92
gi|666335600|ref|NM_014945.3| Homo sapiens actin binding LIM pr... 34.2 0.92
gi|666335608|ref|NM_001301015.1| Homo sapiens actin binding LIM... 34.2 0.92
gi|666335557|ref|NM_001301027.1| Homo sapiens actin binding LIM... 34.2 0.92
gi|1034645884|ref|XM_017009779.1| PREDICTED: Homo sapiens slit ... 32.2 3.6
gi|429836872|ref|NM_001271946.1| Homo sapiens slit guidance lig... 32.2 3.6
gi|429836874|ref|NM_003062.3| Homo sapiens slit guidance ligand... 32.2 3.6
gi|156523967|ref|NM_001618.3| Homo sapiens poly (ADP-ribose) po... 32.2 3.6
> gi|767967525|ref|XM_011544773.1| PREDICTED: Homo sapiens G protein-coupled
receptor kinase 2 (GRK2), transcript variant X1,
mRNA
Length=3183
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CCTCGGCTCCTGCTGCACCAA 21
|||||||||||||||||||||
Sbjct 2228 CCTCGGCTCCTGCTGCACCAA 2248
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TTGGTGCAGCAGGAGCCGAGG 48
|||||||||||||||||||||
Sbjct 2248 TTGGTGCAGCAGGAGCCGAGG 2228
> gi|148539875|ref|NM_001619.3| Homo sapiens adrenergic, beta,
receptor kinase 1 (ADRBK1), mRNA
Length=3478
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CCTCGGCTCCTGCTGCACCAA 21
|||||||||||||||||||||
Sbjct 2487 CCTCGGCTCCTGCTGCACCAA 2507
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TTGGTGCAGCAGGAGCCGAGG 48
|||||||||||||||||||||
Sbjct 2507 TTGGTGCAGCAGGAGCCGAGG 2487
> gi|1034572124|ref|XR_001747779.1| PREDICTED: Homo sapiens G protein-coupled
receptor kinase 2 (GRK2), transcript variant
X2, misc_RNA
Length=3389
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CCTCGGCTCCTGCTGCACCAA 21
|||||||||||||||||||||
Sbjct 2434 CCTCGGCTCCTGCTGCACCAA 2454
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TTGGTGCAGCAGGAGCCGAGG 48
|||||||||||||||||||||
Sbjct 2454 TTGGTGCAGCAGGAGCCGAGG 2434
> gi|666335581|ref|NM_001301018.1| Homo sapiens actin binding LIM
protein family member 3 (ABLIM3), transcript variant 3, mRNA
Length=4088
Score = 34.2 bits (17), Expect = 0.92
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 1 CCTCGGCTCCTGCTGCA 17
|||||||||||||||||
Sbjct 3145 CCTCGGCTCCTGCTGCA 3161
Score = 34.2 bits (17), Expect = 0.92
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 32 TGCAGCAGGAGCCGAGG 48
|||||||||||||||||
Sbjct 3161 TGCAGCAGGAGCCGAGG 3145
> gi|1034644234|ref|XM_017009238.1| PREDICTED: Homo sapiens actin
binding LIM protein family member 3 (ABLIM3), transcript
variant X5, mRNA
Length=4136
Score = 34.2 bits (17), Expect = 0.92
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 1 CCTCGGCTCCTGCTGCA 17
|||||||||||||||||
Sbjct 3206 CCTCGGCTCCTGCTGCA 3222
Score = 34.2 bits (17), Expect = 0.92
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 32 TGCAGCAGGAGCCGAGG 48
|||||||||||||||||
Sbjct 3222 TGCAGCAGGAGCCGAGG 3206
> gi|530380447|ref|XM_005268396.1| PREDICTED: Homo sapiens actin
binding LIM protein family member 3 (ABLIM3), transcript variant
X6, mRNA
Length=3994
Score = 34.2 bits (17), Expect = 0.92
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 1 CCTCGGCTCCTGCTGCA 17
|||||||||||||||||
Sbjct 3064 CCTCGGCTCCTGCTGCA 3080
Score = 34.2 bits (17), Expect = 0.92
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 32 TGCAGCAGGAGCCGAGG 48
|||||||||||||||||
Sbjct 3080 TGCAGCAGGAGCCGAGG 3064
> gi|530380445|ref|XM_005268395.1| PREDICTED: Homo sapiens actin
binding LIM protein family member 3 (ABLIM3), transcript variant
X4, mRNA
Length=4042
Score = 34.2 bits (17), Expect = 0.92
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 1 CCTCGGCTCCTGCTGCA 17
|||||||||||||||||
Sbjct 3112 CCTCGGCTCCTGCTGCA 3128
Score = 34.2 bits (17), Expect = 0.92
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 32 TGCAGCAGGAGCCGAGG 48
|||||||||||||||||
Sbjct 3128 TGCAGCAGGAGCCGAGG 3112
> gi|530380443|ref|XM_005268394.1| PREDICTED: Homo sapiens actin
binding LIM protein family member 3 (ABLIM3), transcript variant
X3, mRNA
Length=4141
Score = 34.2 bits (17), Expect = 0.92
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 1 CCTCGGCTCCTGCTGCA 17
|||||||||||||||||
Sbjct 3211 CCTCGGCTCCTGCTGCA 3227
Score = 34.2 bits (17), Expect = 0.92
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 32 TGCAGCAGGAGCCGAGG 48
|||||||||||||||||
Sbjct 3227 TGCAGCAGGAGCCGAGG 3211
> gi|530380441|ref|XM_005268393.1| PREDICTED: Homo sapiens actin
binding LIM protein family member 3 (ABLIM3), transcript variant
X2, mRNA
Length=4180
Score = 34.2 bits (17), Expect = 0.92
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 1 CCTCGGCTCCTGCTGCA 17
|||||||||||||||||
Sbjct 3250 CCTCGGCTCCTGCTGCA 3266
Score = 34.2 bits (17), Expect = 0.92
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 32 TGCAGCAGGAGCCGAGG 48
|||||||||||||||||
Sbjct 3266 TGCAGCAGGAGCCGAGG 3250
> gi|530380439|ref|XM_005268392.1| PREDICTED: Homo sapiens actin
binding LIM protein family member 3 (ABLIM3), transcript variant
X1, mRNA
Length=4228
Score = 34.2 bits (17), Expect = 0.92
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 1 CCTCGGCTCCTGCTGCA 17
|||||||||||||||||
Sbjct 3298 CCTCGGCTCCTGCTGCA 3314
Score = 34.2 bits (17), Expect = 0.92
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 32 TGCAGCAGGAGCCGAGG 48
|||||||||||||||||
Sbjct 3314 TGCAGCAGGAGCCGAGG 3298
> gi|666335600|ref|NM_014945.3| Homo sapiens actin binding LIM
protein family member 3 (ABLIM3), transcript variant 2, mRNA
Length=4359
Score = 34.2 bits (17), Expect = 0.92
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 1 CCTCGGCTCCTGCTGCA 17
|||||||||||||||||
Sbjct 3416 CCTCGGCTCCTGCTGCA 3432
Score = 34.2 bits (17), Expect = 0.92
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 32 TGCAGCAGGAGCCGAGG 48
|||||||||||||||||
Sbjct 3432 TGCAGCAGGAGCCGAGG 3416
> gi|666335608|ref|NM_001301015.1| Homo sapiens actin binding LIM
protein family member 3 (ABLIM3), transcript variant 1, mRNA
Length=4713
Score = 34.2 bits (17), Expect = 0.92
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 1 CCTCGGCTCCTGCTGCA 17
|||||||||||||||||
Sbjct 3770 CCTCGGCTCCTGCTGCA 3786
Score = 34.2 bits (17), Expect = 0.92
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 32 TGCAGCAGGAGCCGAGG 48
|||||||||||||||||
Sbjct 3786 TGCAGCAGGAGCCGAGG 3770
> gi|666335557|ref|NM_001301027.1| Homo sapiens actin binding LIM
protein family member 3 (ABLIM3), transcript variant 4, mRNA
Length=4459
Score = 34.2 bits (17), Expect = 0.92
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 1 CCTCGGCTCCTGCTGCA 17
|||||||||||||||||
Sbjct 3516 CCTCGGCTCCTGCTGCA 3532
Score = 34.2 bits (17), Expect = 0.92
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 32 TGCAGCAGGAGCCGAGG 48
|||||||||||||||||
Sbjct 3532 TGCAGCAGGAGCCGAGG 3516
> gi|1034645884|ref|XM_017009779.1| PREDICTED: Homo sapiens slit
guidance ligand 3 (SLIT3), transcript variant X1, mRNA
Length=9109
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 29 TGGTGCAGCAGGAGCC 44
||||||||||||||||
Sbjct 3230 TGGTGCAGCAGGAGCC 3245
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 5 GGCTCCTGCTGCACCA 20
||||||||||||||||
Sbjct 3245 GGCTCCTGCTGCACCA 3230
> gi|429836872|ref|NM_001271946.1| Homo sapiens slit guidance ligand
3 (SLIT3), transcript variant 1, mRNA
Length=9748
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 29 TGGTGCAGCAGGAGCC 44
||||||||||||||||
Sbjct 3848 TGGTGCAGCAGGAGCC 3863
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 5 GGCTCCTGCTGCACCA 20
||||||||||||||||
Sbjct 3863 GGCTCCTGCTGCACCA 3848
> gi|429836874|ref|NM_003062.3| Homo sapiens slit guidance ligand
3 (SLIT3), transcript variant 2, mRNA
Length=9727
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 29 TGGTGCAGCAGGAGCC 44
||||||||||||||||
Sbjct 3827 TGGTGCAGCAGGAGCC 3842
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 5 GGCTCCTGCTGCACCA 20
||||||||||||||||
Sbjct 3842 GGCTCCTGCTGCACCA 3827
> gi|156523967|ref|NM_001618.3| Homo sapiens poly (ADP-ribose)
polymerase 1 (PARP1), mRNA
Length=4001
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 1 CCTCGGCTCCTGCTGC 16
||||||||||||||||
Sbjct 1292 CCTCGGCTCCTGCTGC 1307
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 33 GCAGCAGGAGCCGAGG 48
||||||||||||||||
Sbjct 1307 GCAGCAGGAGCCGAGG 1292
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 18107678429
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2