BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= CCTCCTCGCACTTCTGTTCC (evalue = 10)
Length=20
Score E
Sequences producing significant alignments: (Bits) Value
gi|77628152|ref|NM_053056.2| Homo sapiens cyclin D1 (CCND1), mRNA 40.1 0.002
gi|209969683|ref|NM_001759.3| Homo sapiens cyclin D2 (CCND2), mRNA 30.2 1.9
gi|1034590669|ref|XM_017022206.1| PREDICTED: Homo sapiens milk ... 28.2 7.3
gi|1034590668|ref|XR_931838.2| PREDICTED: Homo sapiens milk fat... 28.2 7.3
gi|874507477|ref|NM_001310321.1| Homo sapiens milk fat globule-... 28.2 7.3
gi|874507475|ref|NM_001310320.1| Homo sapiens milk fat globule-... 28.2 7.3
gi|874507471|ref|NM_005928.3| Homo sapiens milk fat globule-EGF... 28.2 7.3
gi|874507472|ref|NM_001114614.2| Homo sapiens milk fat globule-... 28.2 7.3
gi|523567567|ref|NR_103855.1| Homo sapiens uncharacterized LOC1... 28.2 7.3
gi|1034633397|ref|XM_017006442.1| PREDICTED: Homo sapiens muscl... 28.2 7.3
gi|1034633345|ref|XM_017006424.1| PREDICTED: Homo sapiens muscl... 28.2 7.3
gi|1034633351|ref|XM_017006426.1| PREDICTED: Homo sapiens muscl... 28.2 7.3
gi|1034633399|ref|XM_017006443.1| PREDICTED: Homo sapiens muscl... 28.2 7.3
gi|1034633365|ref|XM_017006431.1| PREDICTED: Homo sapiens muscl... 28.2 7.3
> gi|77628152|ref|NM_053056.2| Homo sapiens cyclin D1 (CCND1),
mRNA
Length=4304
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 CCTCCTCGCACTTCTGTTCC 20
||||||||||||||||||||
Sbjct 435 CCTCCTCGCACTTCTGTTCC 416
> gi|209969683|ref|NM_001759.3| Homo sapiens cyclin D2 (CCND2),
mRNA
Length=6531
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 6 TCGCACTTCTGTTCC 20
|||||||||||||||
Sbjct 523 TCGCACTTCTGTTCC 509
> gi|1034590669|ref|XM_017022206.1| PREDICTED: Homo sapiens milk
fat globule-EGF factor 8 protein (MFGE8), transcript variant
X2, mRNA
Length=2800
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 CTCCTCGCACTTCT 15
||||||||||||||
Sbjct 277 CTCCTCGCACTTCT 264
> gi|1034590668|ref|XR_931838.2| PREDICTED: Homo sapiens milk fat
globule-EGF factor 8 protein (MFGE8), transcript variant
X1, misc_RNA
Length=1214
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 CTCCTCGCACTTCT 15
||||||||||||||
Sbjct 277 CTCCTCGCACTTCT 264
> gi|874507477|ref|NM_001310321.1| Homo sapiens milk fat globule-EGF
factor 8 protein (MFGE8), transcript variant 5, mRNA
Length=2154
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 CTCCTCGCACTTCT 15
||||||||||||||
Sbjct 404 CTCCTCGCACTTCT 391
> gi|874507475|ref|NM_001310320.1| Homo sapiens milk fat globule-EGF
factor 8 protein (MFGE8), transcript variant 3, mRNA
Length=2095
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 CTCCTCGCACTTCT 15
||||||||||||||
Sbjct 345 CTCCTCGCACTTCT 332
> gi|874507471|ref|NM_005928.3| Homo sapiens milk fat globule-EGF
factor 8 protein (MFGE8), transcript variant 1, mRNA
Length=2042
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 CTCCTCGCACTTCT 15
||||||||||||||
Sbjct 292 CTCCTCGCACTTCT 279
> gi|874507472|ref|NM_001114614.2| Homo sapiens milk fat globule-EGF
factor 8 protein (MFGE8), transcript variant 2, mRNA
Length=1886
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 CTCCTCGCACTTCT 15
||||||||||||||
Sbjct 292 CTCCTCGCACTTCT 279
> gi|523567567|ref|NR_103855.1| Homo sapiens uncharacterized LOC100506258
(LOC100506258), long non-coding RNA
Length=4508
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 TCGCACTTCTGTTC 19
||||||||||||||
Sbjct 3285 TCGCACTTCTGTTC 3272
> gi|1034633397|ref|XM_017006442.1| PREDICTED: Homo sapiens muscleblind
like splicing regulator 1 (MBNL1), transcript variant
X46, mRNA
Length=4050
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 CCTCCTCGCACTTC 14
||||||||||||||
Sbjct 43 CCTCCTCGCACTTC 30
> gi|1034633345|ref|XM_017006424.1| PREDICTED: Homo sapiens muscleblind
like splicing regulator 1 (MBNL1), transcript variant
X11, mRNA
Length=5651
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 CCTCCTCGCACTTC 14
||||||||||||||
Sbjct 47 CCTCCTCGCACTTC 34
> gi|1034633351|ref|XM_017006426.1| PREDICTED: Homo sapiens muscleblind
like splicing regulator 1 (MBNL1), transcript variant
X15, mRNA
Length=5641
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 CCTCCTCGCACTTC 14
||||||||||||||
Sbjct 47 CCTCCTCGCACTTC 34
> gi|1034633399|ref|XM_017006443.1| PREDICTED: Homo sapiens muscleblind
like splicing regulator 1 (MBNL1), transcript variant
X47, mRNA
Length=3963
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 CCTCCTCGCACTTC 14
||||||||||||||
Sbjct 51 CCTCCTCGCACTTC 38
> gi|1034633365|ref|XM_017006431.1| PREDICTED: Homo sapiens muscleblind
like splicing regulator 1 (MBNL1), transcript variant
X24, mRNA
Length=5597
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 CCTCCTCGCACTTC 14
||||||||||||||
Sbjct 82 CCTCCTCGCACTTC 69
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 2337180340
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2