BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= CCGGGCTGAACAATTTCAGTCATTTCTCGAGAAATGACTGAAATTGTTCAGCTTTTTG (evalue =
10)
Length=58
Score E
Sequences producing significant alignments: (Bits) Value
gi|31377729|ref|NM_020143.2| Homo sapiens partner of NOB1 homol... 44.1 0.001
gi|1034644827|ref|XM_005268442.3| PREDICTED: Homo sapiens N-dea... 38.2 0.076
gi|1034644822|ref|XM_017009433.1| PREDICTED: Homo sapiens N-dea... 38.2 0.076
gi|1034644820|ref|XM_017009432.1| PREDICTED: Homo sapiens N-dea... 38.2 0.076
gi|1034644815|ref|XM_017009430.1| PREDICTED: Homo sapiens N-dea... 38.2 0.076
gi|578810874|ref|XM_006714782.1| PREDICTED: Homo sapiens N-deac... 38.2 0.076
gi|196049385|ref|NM_001543.4| Homo sapiens N-deacetylase/N-sulf... 38.2 0.076
gi|1034644806|ref|XM_005268436.3| PREDICTED: Homo sapiens N-dea... 38.2 0.076
gi|666637968|ref|NM_001301063.1| Homo sapiens N-deacetylase/N-s... 38.2 0.076
gi|1034644817|ref|XM_017009431.1| PREDICTED: Homo sapiens N-dea... 38.2 0.076
gi|1034644810|ref|XM_005268434.2| PREDICTED: Homo sapiens N-dea... 38.2 0.076
gi|1034644807|ref|XM_017009427.1| PREDICTED: Homo sapiens N-dea... 38.2 0.076
gi|1034644813|ref|XM_017009429.1| PREDICTED: Homo sapiens N-dea... 38.2 0.076
gi|1034644809|ref|XM_005268437.4| PREDICTED: Homo sapiens N-dea... 38.2 0.076
gi|1034644819|ref|XM_011537638.2| PREDICTED: Homo sapiens N-dea... 38.2 0.076
gi|530380533|ref|XM_005268439.1| PREDICTED: Homo sapiens N-deac... 38.2 0.076
gi|530380531|ref|XM_005268438.1| PREDICTED: Homo sapiens N-deac... 38.2 0.076
gi|578810876|ref|XM_006714783.1| PREDICTED: Homo sapiens N-deac... 38.2 0.076
gi|530380521|ref|XM_005268433.1| PREDICTED: Homo sapiens N-deac... 38.2 0.076
gi|1034644811|ref|XM_017009428.1| PREDICTED: Homo sapiens N-dea... 38.2 0.076
gi|1034644805|ref|XM_005268435.4| PREDICTED: Homo sapiens N-dea... 38.2 0.076
gi|441478325|ref|NR_073603.1| Homo sapiens autophagy related 12... 34.2 1.2
gi|290560747|ref|NR_033362.1| Homo sapiens autophagy related 12... 34.2 1.2
gi|290563208|ref|NR_033363.1| Homo sapiens autophagy related 12... 34.2 1.2
gi|290560745|ref|NM_004707.3| Homo sapiens autophagy related 12... 34.2 1.2
gi|480540329|ref|NM_001277783.1| Homo sapiens autophagy related... 34.2 1.2
gi|145580603|ref|NM_194291.2| Homo sapiens transmembrane protei... 32.2 4.7
gi|807201034|ref|NM_152682.3| Homo sapiens RWD domain containin... 32.2 4.7
gi|807201028|ref|NM_001307922.1| Homo sapiens RWD domain contai... 32.2 4.7
gi|1034615759|ref|XM_011511617.2| PREDICTED: Homo sapiens sodiu... 32.2 4.7
gi|1034615760|ref|XM_011511618.2| PREDICTED: Homo sapiens sodiu... 32.2 4.7
gi|93141209|ref|NM_021007.2| Homo sapiens sodium voltage-gated ... 32.2 4.7
gi|1034615723|ref|XM_017004655.1| PREDICTED: Homo sapiens sodiu... 32.2 4.7
gi|1034615730|ref|XM_017004658.1| PREDICTED: Homo sapiens sodiu... 32.2 4.7
gi|93141211|ref|NM_001040142.1| Homo sapiens sodium voltage-gat... 32.2 4.7
gi|1034615725|ref|XM_017004656.1| PREDICTED: Homo sapiens sodiu... 32.2 4.7
gi|1034615745|ref|XM_017004664.1| PREDICTED: Homo sapiens sodiu... 32.2 4.7
gi|1034615747|ref|XM_017004665.1| PREDICTED: Homo sapiens sodiu... 32.2 4.7
gi|1034615749|ref|XM_017004666.1| PREDICTED: Homo sapiens sodiu... 32.2 4.7
gi|1034615735|ref|XM_011511610.2| PREDICTED: Homo sapiens sodiu... 32.2 4.7
gi|1034615743|ref|XM_017004663.1| PREDICTED: Homo sapiens sodiu... 32.2 4.7
gi|1034615738|ref|XM_017004661.1| PREDICTED: Homo sapiens sodiu... 32.2 4.7
gi|1034615740|ref|XM_017004662.1| PREDICTED: Homo sapiens sodiu... 32.2 4.7
gi|1034615742|ref|XM_011511613.2| PREDICTED: Homo sapiens sodiu... 32.2 4.7
gi|126362948|ref|NM_006922.3| Homo sapiens sodium voltage-gated... 32.2 4.7
gi|126362946|ref|NM_001081676.1| Homo sapiens sodium voltage-ga... 32.2 4.7
> gi|31377729|ref|NM_020143.2| Homo sapiens partner of NOB1 homolog
(PNO1), mRNA
Length=1994
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 32 AAATGACTGAAATTGTTCAGCT 53
||||||||||||||||||||||
Sbjct 919 AAATGACTGAAATTGTTCAGCT 898
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 5 GCTGAACAATTTCAGTCATTT 25
|||||||||||||||||||||
Sbjct 899 GCTGAACAATTTCAGTCATTT 919
> gi|1034644827|ref|XM_005268442.3| PREDICTED: Homo sapiens N-deacetylase/N-sulfotransferase
1 (NDST1), transcript variant
X22, mRNA
Length=7024
Score = 38.2 bits (19), Expect = 0.076
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Plus
Query 29 GAGAAATGACTGAAATTGTTCAG 51
||||||| |||||||||||||||
Sbjct 4975 GAGAAATAACTGAAATTGTTCAG 4997
Score = 38.2 bits (19), Expect = 0.076
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 6 CTGAACAATTTCAGTCATTTCTC 28
||||||||||||||| |||||||
Sbjct 4997 CTGAACAATTTCAGTTATTTCTC 4975
> gi|1034644822|ref|XM_017009433.1| PREDICTED: Homo sapiens N-deacetylase/N-sulfotransferase
1 (NDST1), transcript variant
X17, mRNA
Length=9786
Score = 38.2 bits (19), Expect = 0.076
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Plus
Query 29 GAGAAATGACTGAAATTGTTCAG 51
||||||| |||||||||||||||
Sbjct 7737 GAGAAATAACTGAAATTGTTCAG 7759
Score = 38.2 bits (19), Expect = 0.076
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 6 CTGAACAATTTCAGTCATTTCTC 28
||||||||||||||| |||||||
Sbjct 7759 CTGAACAATTTCAGTTATTTCTC 7737
> gi|1034644820|ref|XM_017009432.1| PREDICTED: Homo sapiens N-deacetylase/N-sulfotransferase
1 (NDST1), transcript variant
X16, mRNA
Length=9827
Score = 38.2 bits (19), Expect = 0.076
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Plus
Query 29 GAGAAATGACTGAAATTGTTCAG 51
||||||| |||||||||||||||
Sbjct 7778 GAGAAATAACTGAAATTGTTCAG 7800
Score = 38.2 bits (19), Expect = 0.076
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 6 CTGAACAATTTCAGTCATTTCTC 28
||||||||||||||| |||||||
Sbjct 7800 CTGAACAATTTCAGTTATTTCTC 7778
> gi|1034644815|ref|XM_017009430.1| PREDICTED: Homo sapiens N-deacetylase/N-sulfotransferase
1 (NDST1), transcript variant
X11, mRNA
Length=8037
Score = 38.2 bits (19), Expect = 0.076
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Plus
Query 29 GAGAAATGACTGAAATTGTTCAG 51
||||||| |||||||||||||||
Sbjct 5988 GAGAAATAACTGAAATTGTTCAG 6010
Score = 38.2 bits (19), Expect = 0.076
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 6 CTGAACAATTTCAGTCATTTCTC 28
||||||||||||||| |||||||
Sbjct 6010 CTGAACAATTTCAGTTATTTCTC 5988
> gi|578810874|ref|XM_006714782.1| PREDICTED: Homo sapiens N-deacetylase/N-sulfotransferase
1 (NDST1), transcript variant X6,
mRNA
Length=8076
Score = 38.2 bits (19), Expect = 0.076
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Plus
Query 29 GAGAAATGACTGAAATTGTTCAG 51
||||||| |||||||||||||||
Sbjct 6027 GAGAAATAACTGAAATTGTTCAG 6049
Score = 38.2 bits (19), Expect = 0.076
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 6 CTGAACAATTTCAGTCATTTCTC 28
||||||||||||||| |||||||
Sbjct 6049 CTGAACAATTTCAGTTATTTCTC 6027
> gi|196049385|ref|NM_001543.4| Homo sapiens N-deacetylase/N-sulfotransferase
1 (NDST1), transcript variant 1, mRNA
Length=8030
Score = 38.2 bits (19), Expect = 0.076
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Plus
Query 29 GAGAAATGACTGAAATTGTTCAG 51
||||||| |||||||||||||||
Sbjct 5981 GAGAAATAACTGAAATTGTTCAG 6003
Score = 38.2 bits (19), Expect = 0.076
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 6 CTGAACAATTTCAGTCATTTCTC 28
||||||||||||||| |||||||
Sbjct 6003 CTGAACAATTTCAGTTATTTCTC 5981
> gi|1034644806|ref|XM_005268436.3| PREDICTED: Homo sapiens N-deacetylase/N-sulfotransferase
1 (NDST1), transcript variant
X3, mRNA
Length=9815
Score = 38.2 bits (19), Expect = 0.076
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Plus
Query 29 GAGAAATGACTGAAATTGTTCAG 51
||||||| |||||||||||||||
Sbjct 7766 GAGAAATAACTGAAATTGTTCAG 7788
Score = 38.2 bits (19), Expect = 0.076
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 6 CTGAACAATTTCAGTCATTTCTC 28
||||||||||||||| |||||||
Sbjct 7788 CTGAACAATTTCAGTTATTTCTC 7766
> gi|666637968|ref|NM_001301063.1| Homo sapiens N-deacetylase/N-sulfotransferase
1 (NDST1), transcript variant 2, mRNA
Length=7970
Score = 38.2 bits (19), Expect = 0.076
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Plus
Query 29 GAGAAATGACTGAAATTGTTCAG 51
||||||| |||||||||||||||
Sbjct 5897 GAGAAATAACTGAAATTGTTCAG 5919
Score = 38.2 bits (19), Expect = 0.076
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 6 CTGAACAATTTCAGTCATTTCTC 28
||||||||||||||| |||||||
Sbjct 5919 CTGAACAATTTCAGTTATTTCTC 5897
> gi|1034644817|ref|XM_017009431.1| PREDICTED: Homo sapiens N-deacetylase/N-sulfotransferase
1 (NDST1), transcript variant
X12, mRNA
Length=8607
Score = 38.2 bits (19), Expect = 0.076
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Plus
Query 29 GAGAAATGACTGAAATTGTTCAG 51
||||||| |||||||||||||||
Sbjct 6558 GAGAAATAACTGAAATTGTTCAG 6580
Score = 38.2 bits (19), Expect = 0.076
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 6 CTGAACAATTTCAGTCATTTCTC 28
||||||||||||||| |||||||
Sbjct 6580 CTGAACAATTTCAGTTATTTCTC 6558
> gi|1034644810|ref|XM_005268434.2| PREDICTED: Homo sapiens N-deacetylase/N-sulfotransferase
1 (NDST1), transcript variant
X7, mRNA
Length=8650
Score = 38.2 bits (19), Expect = 0.076
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Plus
Query 29 GAGAAATGACTGAAATTGTTCAG 51
||||||| |||||||||||||||
Sbjct 6601 GAGAAATAACTGAAATTGTTCAG 6623
Score = 38.2 bits (19), Expect = 0.076
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 6 CTGAACAATTTCAGTCATTTCTC 28
||||||||||||||| |||||||
Sbjct 6623 CTGAACAATTTCAGTTATTTCTC 6601
> gi|1034644807|ref|XM_017009427.1| PREDICTED: Homo sapiens N-deacetylase/N-sulfotransferase
1 (NDST1), transcript variant
X4, mRNA
Length=11032
Score = 38.2 bits (19), Expect = 0.076
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Plus
Query 29 GAGAAATGACTGAAATTGTTCAG 51
||||||| |||||||||||||||
Sbjct 8983 GAGAAATAACTGAAATTGTTCAG 9005
Score = 38.2 bits (19), Expect = 0.076
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 6 CTGAACAATTTCAGTCATTTCTC 28
||||||||||||||| |||||||
Sbjct 9005 CTGAACAATTTCAGTTATTTCTC 8983
> gi|1034644813|ref|XM_017009429.1| PREDICTED: Homo sapiens N-deacetylase/N-sulfotransferase
1 (NDST1), transcript variant
X10, mRNA
Length=8015
Score = 38.2 bits (19), Expect = 0.076
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Plus
Query 29 GAGAAATGACTGAAATTGTTCAG 51
||||||| |||||||||||||||
Sbjct 5966 GAGAAATAACTGAAATTGTTCAG 5988
Score = 38.2 bits (19), Expect = 0.076
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 6 CTGAACAATTTCAGTCATTTCTC 28
||||||||||||||| |||||||
Sbjct 5988 CTGAACAATTTCAGTTATTTCTC 5966
> gi|1034644809|ref|XM_005268437.4| PREDICTED: Homo sapiens N-deacetylase/N-sulfotransferase
1 (NDST1), transcript variant
X5, mRNA
Length=8054
Score = 38.2 bits (19), Expect = 0.076
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Plus
Query 29 GAGAAATGACTGAAATTGTTCAG 51
||||||| |||||||||||||||
Sbjct 6005 GAGAAATAACTGAAATTGTTCAG 6027
Score = 38.2 bits (19), Expect = 0.076
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 6 CTGAACAATTTCAGTCATTTCTC 28
||||||||||||||| |||||||
Sbjct 6027 CTGAACAATTTCAGTTATTTCTC 6005
> gi|1034644819|ref|XM_011537638.2| PREDICTED: Homo sapiens N-deacetylase/N-sulfotransferase
1 (NDST1), transcript variant
X15, mRNA
Length=7131
Score = 38.2 bits (19), Expect = 0.076
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Plus
Query 29 GAGAAATGACTGAAATTGTTCAG 51
||||||| |||||||||||||||
Sbjct 5082 GAGAAATAACTGAAATTGTTCAG 5104
Score = 38.2 bits (19), Expect = 0.076
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 6 CTGAACAATTTCAGTCATTTCTC 28
||||||||||||||| |||||||
Sbjct 5104 CTGAACAATTTCAGTTATTTCTC 5082
> gi|530380533|ref|XM_005268439.1| PREDICTED: Homo sapiens N-deacetylase/N-sulfotransferase
1 (NDST1), transcript variant X14,
mRNA
Length=7831
Score = 38.2 bits (19), Expect = 0.076
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Plus
Query 29 GAGAAATGACTGAAATTGTTCAG 51
||||||| |||||||||||||||
Sbjct 5782 GAGAAATAACTGAAATTGTTCAG 5804
Score = 38.2 bits (19), Expect = 0.076
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 6 CTGAACAATTTCAGTCATTTCTC 28
||||||||||||||| |||||||
Sbjct 5804 CTGAACAATTTCAGTTATTTCTC 5782
> gi|530380531|ref|XM_005268438.1| PREDICTED: Homo sapiens N-deacetylase/N-sulfotransferase
1 (NDST1), transcript variant X13,
mRNA
Length=7870
Score = 38.2 bits (19), Expect = 0.076
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Plus
Query 29 GAGAAATGACTGAAATTGTTCAG 51
||||||| |||||||||||||||
Sbjct 5821 GAGAAATAACTGAAATTGTTCAG 5843
Score = 38.2 bits (19), Expect = 0.076
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 6 CTGAACAATTTCAGTCATTTCTC 28
||||||||||||||| |||||||
Sbjct 5843 CTGAACAATTTCAGTTATTTCTC 5821
> gi|578810876|ref|XM_006714783.1| PREDICTED: Homo sapiens N-deacetylase/N-sulfotransferase
1 (NDST1), transcript variant X8,
mRNA
Length=8002
Score = 38.2 bits (19), Expect = 0.076
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Plus
Query 29 GAGAAATGACTGAAATTGTTCAG 51
||||||| |||||||||||||||
Sbjct 5953 GAGAAATAACTGAAATTGTTCAG 5975
Score = 38.2 bits (19), Expect = 0.076
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 6 CTGAACAATTTCAGTCATTTCTC 28
||||||||||||||| |||||||
Sbjct 5975 CTGAACAATTTCAGTTATTTCTC 5953
> gi|530380521|ref|XM_005268433.1| PREDICTED: Homo sapiens N-deacetylase/N-sulfotransferase
1 (NDST1), transcript variant X1,
mRNA
Length=8041
Score = 38.2 bits (19), Expect = 0.076
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Plus
Query 29 GAGAAATGACTGAAATTGTTCAG 51
||||||| |||||||||||||||
Sbjct 5992 GAGAAATAACTGAAATTGTTCAG 6014
Score = 38.2 bits (19), Expect = 0.076
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 6 CTGAACAATTTCAGTCATTTCTC 28
||||||||||||||| |||||||
Sbjct 6014 CTGAACAATTTCAGTTATTTCTC 5992
> gi|1034644811|ref|XM_017009428.1| PREDICTED: Homo sapiens N-deacetylase/N-sulfotransferase
1 (NDST1), transcript variant
X9, mRNA
Length=8135
Score = 38.2 bits (19), Expect = 0.076
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Plus
Query 29 GAGAAATGACTGAAATTGTTCAG 51
||||||| |||||||||||||||
Sbjct 6086 GAGAAATAACTGAAATTGTTCAG 6108
Score = 38.2 bits (19), Expect = 0.076
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 6 CTGAACAATTTCAGTCATTTCTC 28
||||||||||||||| |||||||
Sbjct 6108 CTGAACAATTTCAGTTATTTCTC 6086
> gi|1034644805|ref|XM_005268435.4| PREDICTED: Homo sapiens N-deacetylase/N-sulfotransferase
1 (NDST1), transcript variant
X2, mRNA
Length=8175
Score = 38.2 bits (19), Expect = 0.076
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Plus
Query 29 GAGAAATGACTGAAATTGTTCAG 51
||||||| |||||||||||||||
Sbjct 6126 GAGAAATAACTGAAATTGTTCAG 6148
Score = 38.2 bits (19), Expect = 0.076
Identities = 22/23 (96%), Gaps = 0/23 (0%)
Strand=Plus/Minus
Query 6 CTGAACAATTTCAGTCATTTCTC 28
||||||||||||||| |||||||
Sbjct 6148 CTGAACAATTTCAGTTATTTCTC 6126
> gi|441478325|ref|NR_073603.1| Homo sapiens autophagy related
12 (ATG12), transcript variant 4, non-coding RNA
Length=4563
Score = 34.2 bits (17), Expect = 1.2
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 32 AAATGACTGAAATTGTT 48
|||||||||||||||||
Sbjct 1278 AAATGACTGAAATTGTT 1294
Score = 34.2 bits (17), Expect = 1.2
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 9 AACAATTTCAGTCATTT 25
|||||||||||||||||
Sbjct 1294 AACAATTTCAGTCATTT 1278
> gi|290560747|ref|NR_033362.1| Homo sapiens autophagy related
12 (ATG12), transcript variant 2, non-coding RNA
Length=4447
Score = 34.2 bits (17), Expect = 1.2
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 32 AAATGACTGAAATTGTT 48
|||||||||||||||||
Sbjct 1162 AAATGACTGAAATTGTT 1178
Score = 34.2 bits (17), Expect = 1.2
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 9 AACAATTTCAGTCATTT 25
|||||||||||||||||
Sbjct 1178 AACAATTTCAGTCATTT 1162
> gi|290563208|ref|NR_033363.1| Homo sapiens autophagy related
12 (ATG12), transcript variant 3, non-coding RNA
Length=4446
Score = 34.2 bits (17), Expect = 1.2
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 32 AAATGACTGAAATTGTT 48
|||||||||||||||||
Sbjct 1161 AAATGACTGAAATTGTT 1177
Score = 34.2 bits (17), Expect = 1.2
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 9 AACAATTTCAGTCATTT 25
|||||||||||||||||
Sbjct 1177 AACAATTTCAGTCATTT 1161
> gi|290560745|ref|NM_004707.3| Homo sapiens autophagy related
12 (ATG12), transcript variant 1, mRNA
Length=4330
Score = 34.2 bits (17), Expect = 1.2
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 32 AAATGACTGAAATTGTT 48
|||||||||||||||||
Sbjct 1045 AAATGACTGAAATTGTT 1061
Score = 34.2 bits (17), Expect = 1.2
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 9 AACAATTTCAGTCATTT 25
|||||||||||||||||
Sbjct 1061 AACAATTTCAGTCATTT 1045
> gi|480540329|ref|NM_001277783.1| Homo sapiens autophagy related
12 (ATG12), transcript variant 5, mRNA
Length=4193
Score = 34.2 bits (17), Expect = 1.2
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 32 AAATGACTGAAATTGTT 48
|||||||||||||||||
Sbjct 908 AAATGACTGAAATTGTT 924
Score = 34.2 bits (17), Expect = 1.2
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 9 AACAATTTCAGTCATTT 25
|||||||||||||||||
Sbjct 924 AACAATTTCAGTCATTT 908
> gi|145580603|ref|NM_194291.2| Homo sapiens transmembrane protein
65 (TMEM65), mRNA
Length=4318
Score = 32.2 bits (16), Expect = 4.7
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 12 AATTTCAGTCATTTCT 27
||||||||||||||||
Sbjct 1761 AATTTCAGTCATTTCT 1776
Score = 32.2 bits (16), Expect = 4.7
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 30 AGAAATGACTGAAATT 45
||||||||||||||||
Sbjct 1776 AGAAATGACTGAAATT 1761
> gi|807201034|ref|NM_152682.3| Homo sapiens RWD domain containing
4 (RWDD4), transcript variant 1, mRNA
Length=2652
Score = 32.2 bits (16), Expect = 4.7
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 36 GACTGAAATTGTTCAG 51
||||||||||||||||
Sbjct 2353 GACTGAAATTGTTCAG 2368
Score = 32.2 bits (16), Expect = 4.7
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 6 CTGAACAATTTCAGTC 21
||||||||||||||||
Sbjct 2368 CTGAACAATTTCAGTC 2353
> gi|807201028|ref|NM_001307922.1| Homo sapiens RWD domain containing
4 (RWDD4), transcript variant 2, mRNA
Length=2648
Score = 32.2 bits (16), Expect = 4.7
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 36 GACTGAAATTGTTCAG 51
||||||||||||||||
Sbjct 2349 GACTGAAATTGTTCAG 2364
Score = 32.2 bits (16), Expect = 4.7
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 6 CTGAACAATTTCAGTC 21
||||||||||||||||
Sbjct 2364 CTGAACAATTTCAGTC 2349
> gi|1034615759|ref|XM_011511617.2| PREDICTED: Homo sapiens sodium
voltage-gated channel alpha subunit 9 (SCN9A), transcript
variant X3, mRNA
Length=6354
Score = 32.2 bits (16), Expect = 4.7
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 9 AACAATTTCAGTCATT 24
||||||||||||||||
Sbjct 983 AACAATTTCAGTCATT 998
Score = 32.2 bits (16), Expect = 4.7
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 33 AATGACTGAAATTGTT 48
||||||||||||||||
Sbjct 998 AATGACTGAAATTGTT 983
> gi|1034615760|ref|XM_011511618.2| PREDICTED: Homo sapiens sodium
voltage-gated channel alpha subunit 9 (SCN9A), transcript
variant X4, mRNA
Length=6321
Score = 32.2 bits (16), Expect = 4.7
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 9 AACAATTTCAGTCATT 24
||||||||||||||||
Sbjct 983 AACAATTTCAGTCATT 998
Score = 32.2 bits (16), Expect = 4.7
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 33 AATGACTGAAATTGTT 48
||||||||||||||||
Sbjct 998 AATGACTGAAATTGTT 983
> gi|93141209|ref|NM_021007.2| Homo sapiens sodium voltage-gated
channel alpha subunit 2 (SCN2A), transcript variant 1, mRNA
Length=8876
Score = 32.2 bits (16), Expect = 4.7
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 9 AACAATTTCAGTCATT 24
||||||||||||||||
Sbjct 1034 AACAATTTCAGTCATT 1049
Score = 32.2 bits (16), Expect = 4.7
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 33 AATGACTGAAATTGTT 48
||||||||||||||||
Sbjct 1049 AATGACTGAAATTGTT 1034
> gi|1034615723|ref|XM_017004655.1| PREDICTED: Homo sapiens sodium
voltage-gated channel alpha subunit 2 (SCN2A), transcript
variant X1, mRNA
Length=8709
Score = 32.2 bits (16), Expect = 4.7
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 9 AACAATTTCAGTCATT 24
||||||||||||||||
Sbjct 883 AACAATTTCAGTCATT 898
Score = 32.2 bits (16), Expect = 4.7
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 33 AATGACTGAAATTGTT 48
||||||||||||||||
Sbjct 898 AATGACTGAAATTGTT 883
> gi|1034615730|ref|XM_017004658.1| PREDICTED: Homo sapiens sodium
voltage-gated channel alpha subunit 2 (SCN2A), transcript
variant X5, mRNA
Length=8974
Score = 32.2 bits (16), Expect = 4.7
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 9 AACAATTTCAGTCATT 24
||||||||||||||||
Sbjct 1148 AACAATTTCAGTCATT 1163
Score = 32.2 bits (16), Expect = 4.7
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 33 AATGACTGAAATTGTT 48
||||||||||||||||
Sbjct 1163 AATGACTGAAATTGTT 1148
> gi|93141211|ref|NM_001040142.1| Homo sapiens sodium voltage-gated
channel alpha subunit 2 (SCN2A), transcript variant 2,
mRNA
Length=8810
Score = 32.2 bits (16), Expect = 4.7
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 9 AACAATTTCAGTCATT 24
||||||||||||||||
Sbjct 968 AACAATTTCAGTCATT 983
Score = 32.2 bits (16), Expect = 4.7
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 33 AATGACTGAAATTGTT 48
||||||||||||||||
Sbjct 983 AATGACTGAAATTGTT 968
> gi|1034615725|ref|XM_017004656.1| PREDICTED: Homo sapiens sodium
voltage-gated channel alpha subunit 2 (SCN2A), transcript
variant X2, mRNA
Length=8765
Score = 32.2 bits (16), Expect = 4.7
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 9 AACAATTTCAGTCATT 24
||||||||||||||||
Sbjct 939 AACAATTTCAGTCATT 954
Score = 32.2 bits (16), Expect = 4.7
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 33 AATGACTGAAATTGTT 48
||||||||||||||||
Sbjct 954 AATGACTGAAATTGTT 939
> gi|1034615745|ref|XM_017004664.1| PREDICTED: Homo sapiens sodium
voltage-gated channel alpha subunit 3 (SCN3A), transcript
variant X7, mRNA
Length=5703
Score = 32.2 bits (16), Expect = 4.7
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 9 AACAATTTCAGTCATT 24
||||||||||||||||
Sbjct 1150 AACAATTTCAGTCATT 1165
Score = 32.2 bits (16), Expect = 4.7
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 33 AATGACTGAAATTGTT 48
||||||||||||||||
Sbjct 1165 AATGACTGAAATTGTT 1150
> gi|1034615747|ref|XM_017004665.1| PREDICTED: Homo sapiens sodium
voltage-gated channel alpha subunit 3 (SCN3A), transcript
variant X8, mRNA
Length=5565
Score = 32.2 bits (16), Expect = 4.7
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 9 AACAATTTCAGTCATT 24
||||||||||||||||
Sbjct 1150 AACAATTTCAGTCATT 1165
Score = 32.2 bits (16), Expect = 4.7
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 33 AATGACTGAAATTGTT 48
||||||||||||||||
Sbjct 1165 AATGACTGAAATTGTT 1150
> gi|1034615749|ref|XM_017004666.1| PREDICTED: Homo sapiens sodium
voltage-gated channel alpha subunit 3 (SCN3A), transcript
variant X9, mRNA
Length=5556
Score = 32.2 bits (16), Expect = 4.7
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 9 AACAATTTCAGTCATT 24
||||||||||||||||
Sbjct 1150 AACAATTTCAGTCATT 1165
Score = 32.2 bits (16), Expect = 4.7
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 33 AATGACTGAAATTGTT 48
||||||||||||||||
Sbjct 1165 AATGACTGAAATTGTT 1150
> gi|1034615735|ref|XM_011511610.2| PREDICTED: Homo sapiens sodium
voltage-gated channel alpha subunit 3 (SCN3A), transcript
variant X1, mRNA
Length=9226
Score = 32.2 bits (16), Expect = 4.7
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 9 AACAATTTCAGTCATT 24
||||||||||||||||
Sbjct 1290 AACAATTTCAGTCATT 1305
Score = 32.2 bits (16), Expect = 4.7
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 33 AATGACTGAAATTGTT 48
||||||||||||||||
Sbjct 1305 AATGACTGAAATTGTT 1290
> gi|1034615743|ref|XM_017004663.1| PREDICTED: Homo sapiens sodium
voltage-gated channel alpha subunit 3 (SCN3A), transcript
variant X6, mRNA
Length=9092
Score = 32.2 bits (16), Expect = 4.7
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 9 AACAATTTCAGTCATT 24
||||||||||||||||
Sbjct 1290 AACAATTTCAGTCATT 1305
Score = 32.2 bits (16), Expect = 4.7
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 33 AATGACTGAAATTGTT 48
||||||||||||||||
Sbjct 1305 AATGACTGAAATTGTT 1290
> gi|1034615738|ref|XM_017004661.1| PREDICTED: Homo sapiens sodium
voltage-gated channel alpha subunit 3 (SCN3A), transcript
variant X3, mRNA
Length=9035
Score = 32.2 bits (16), Expect = 4.7
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 9 AACAATTTCAGTCATT 24
||||||||||||||||
Sbjct 1150 AACAATTTCAGTCATT 1165
Score = 32.2 bits (16), Expect = 4.7
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 33 AATGACTGAAATTGTT 48
||||||||||||||||
Sbjct 1165 AATGACTGAAATTGTT 1150
> gi|1034615740|ref|XM_017004662.1| PREDICTED: Homo sapiens sodium
voltage-gated channel alpha subunit 3 (SCN3A), transcript
variant X4, mRNA
Length=8948
Score = 32.2 bits (16), Expect = 4.7
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 9 AACAATTTCAGTCATT 24
||||||||||||||||
Sbjct 1150 AACAATTTCAGTCATT 1165
Score = 32.2 bits (16), Expect = 4.7
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 33 AATGACTGAAATTGTT 48
||||||||||||||||
Sbjct 1165 AATGACTGAAATTGTT 1150
> gi|1034615742|ref|XM_011511613.2| PREDICTED: Homo sapiens sodium
voltage-gated channel alpha subunit 3 (SCN3A), transcript
variant X5, mRNA
Length=9197
Score = 32.2 bits (16), Expect = 4.7
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 9 AACAATTTCAGTCATT 24
||||||||||||||||
Sbjct 1395 AACAATTTCAGTCATT 1410
Score = 32.2 bits (16), Expect = 4.7
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 33 AATGACTGAAATTGTT 48
||||||||||||||||
Sbjct 1410 AATGACTGAAATTGTT 1395
> gi|126362948|ref|NM_006922.3| Homo sapiens sodium voltage-gated
channel alpha subunit 3 (SCN3A), transcript variant 1, mRNA
Length=9141
Score = 32.2 bits (16), Expect = 4.7
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 9 AACAATTTCAGTCATT 24
||||||||||||||||
Sbjct 1167 AACAATTTCAGTCATT 1182
Score = 32.2 bits (16), Expect = 4.7
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 33 AATGACTGAAATTGTT 48
||||||||||||||||
Sbjct 1182 AATGACTGAAATTGTT 1167
> gi|126362946|ref|NM_001081676.1| Homo sapiens sodium voltage-gated
channel alpha subunit 3 (SCN3A), transcript variant 2,
mRNA
Length=8994
Score = 32.2 bits (16), Expect = 4.7
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 9 AACAATTTCAGTCATT 24
||||||||||||||||
Sbjct 1167 AACAATTTCAGTCATT 1182
Score = 32.2 bits (16), Expect = 4.7
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 33 AATGACTGAAATTGTT 48
||||||||||||||||
Sbjct 1182 AATGACTGAAATTGTT 1167
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 23357689320
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2