BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= CCGGGACCATAAAGTCTAAGGTTGTCTCGAGACAACCTTAGACTTTATGGTCTTTTTG (evalue =
10)
Length=58
Score E
Sequences producing significant alignments: (Bits) Value
gi|345197263|ref|NM_001243892.1| Homo sapiens tumor protein D52... 46.1 3e-04
gi|345197261|ref|NM_001243891.1| Homo sapiens tumor protein D52... 46.1 3e-04
gi|345197267|ref|NM_001243894.1| Homo sapiens tumor protein D52... 46.1 3e-04
gi|345197259|ref|NM_199359.2| Homo sapiens tumor protein D52 li... 46.1 3e-04
gi|345197256|ref|NM_199363.2| Homo sapiens tumor protein D52 li... 46.1 3e-04
gi|345197254|ref|NM_199361.2| Homo sapiens tumor protein D52 li... 46.1 3e-04
gi|345199272|ref|NR_045090.1| Homo sapiens tumor protein D52 li... 46.1 3e-04
gi|345197255|ref|NM_003288.3| Homo sapiens tumor protein D52 li... 46.1 3e-04
gi|345197253|ref|NM_199362.2| Homo sapiens tumor protein D52 li... 46.1 3e-04
gi|345128623|ref|NM_199360.2| Homo sapiens tumor protein D52 li... 46.1 3e-04
gi|1034638782|ref|XM_017007854.1| PREDICTED: Homo sapiens epide... 34.2 1.2
gi|1034563460|ref|XM_017002853.1| PREDICTED: Homo sapiens RAS p... 32.2 4.7
> gi|345197263|ref|NM_001243892.1| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 8, mRNA
Length=2230
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Plus
Query 3 GGGACCATAAAGTCTAAGGTTGT 25
|||||||||||||||||||||||
Sbjct 523 GGGACCATAAAGTCTAAGGTTGT 545
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 32 ACAACCTTAGACTTTATGGTC 52
|||||||||||||||||||||
Sbjct 545 ACAACCTTAGACTTTATGGTC 525
> gi|345197261|ref|NM_001243891.1| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 7, mRNA
Length=2284
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Plus
Query 3 GGGACCATAAAGTCTAAGGTTGT 25
|||||||||||||||||||||||
Sbjct 577 GGGACCATAAAGTCTAAGGTTGT 599
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 32 ACAACCTTAGACTTTATGGTC 52
|||||||||||||||||||||
Sbjct 599 ACAACCTTAGACTTTATGGTC 579
> gi|345197267|ref|NM_001243894.1| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 9, mRNA
Length=2197
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Plus
Query 3 GGGACCATAAAGTCTAAGGTTGT 25
|||||||||||||||||||||||
Sbjct 490 GGGACCATAAAGTCTAAGGTTGT 512
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 32 ACAACCTTAGACTTTATGGTC 52
|||||||||||||||||||||
Sbjct 512 ACAACCTTAGACTTTATGGTC 492
> gi|345197259|ref|NM_199359.2| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 6, mRNA
Length=2299
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Plus
Query 3 GGGACCATAAAGTCTAAGGTTGT 25
|||||||||||||||||||||||
Sbjct 592 GGGACCATAAAGTCTAAGGTTGT 614
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 32 ACAACCTTAGACTTTATGGTC 52
|||||||||||||||||||||
Sbjct 614 ACAACCTTAGACTTTATGGTC 594
> gi|345197256|ref|NM_199363.2| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 4, mRNA
Length=2341
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Plus
Query 3 GGGACCATAAAGTCTAAGGTTGT 25
|||||||||||||||||||||||
Sbjct 634 GGGACCATAAAGTCTAAGGTTGT 656
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 32 ACAACCTTAGACTTTATGGTC 52
|||||||||||||||||||||
Sbjct 656 ACAACCTTAGACTTTATGGTC 636
> gi|345197254|ref|NM_199361.2| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 2, mRNA
Length=2368
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Plus
Query 3 GGGACCATAAAGTCTAAGGTTGT 25
|||||||||||||||||||||||
Sbjct 661 GGGACCATAAAGTCTAAGGTTGT 683
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 32 ACAACCTTAGACTTTATGGTC 52
|||||||||||||||||||||
Sbjct 683 ACAACCTTAGACTTTATGGTC 663
> gi|345199272|ref|NR_045090.1| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 11, non-coding RNA
Length=2328
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Plus
Query 3 GGGACCATAAAGTCTAAGGTTGT 25
|||||||||||||||||||||||
Sbjct 621 GGGACCATAAAGTCTAAGGTTGT 643
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 32 ACAACCTTAGACTTTATGGTC 52
|||||||||||||||||||||
Sbjct 643 ACAACCTTAGACTTTATGGTC 623
> gi|345197255|ref|NM_003288.3| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 5, mRNA
Length=2359
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Plus
Query 3 GGGACCATAAAGTCTAAGGTTGT 25
|||||||||||||||||||||||
Sbjct 652 GGGACCATAAAGTCTAAGGTTGT 674
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 32 ACAACCTTAGACTTTATGGTC 52
|||||||||||||||||||||
Sbjct 674 ACAACCTTAGACTTTATGGTC 654
> gi|345197253|ref|NM_199362.2| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 3, mRNA
Length=2401
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Plus
Query 3 GGGACCATAAAGTCTAAGGTTGT 25
|||||||||||||||||||||||
Sbjct 694 GGGACCATAAAGTCTAAGGTTGT 716
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 32 ACAACCTTAGACTTTATGGTC 52
|||||||||||||||||||||
Sbjct 716 ACAACCTTAGACTTTATGGTC 696
> gi|345128623|ref|NM_199360.2| Homo sapiens tumor protein D52
like 2 (TPD52L2), transcript variant 1, mRNA
Length=2428
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Plus
Query 3 GGGACCATAAAGTCTAAGGTTGT 25
|||||||||||||||||||||||
Sbjct 721 GGGACCATAAAGTCTAAGGTTGT 743
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 32 ACAACCTTAGACTTTATGGTC 52
|||||||||||||||||||||
Sbjct 743 ACAACCTTAGACTTTATGGTC 723
> gi|1034638782|ref|XM_017007854.1| PREDICTED: Homo sapiens epidermal
growth factor (EGF), transcript variant X14, mRNA
Length=2826
Score = 34.2 bits (17), Expect = 1.2
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 32 ACAACCTTAGACTTTAT 48
|||||||||||||||||
Sbjct 2674 ACAACCTTAGACTTTAT 2690
Score = 34.2 bits (17), Expect = 1.2
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 9 ATAAAGTCTAAGGTTGT 25
|||||||||||||||||
Sbjct 2690 ATAAAGTCTAAGGTTGT 2674
> gi|1034563460|ref|XM_017002853.1| PREDICTED: Homo sapiens RAS
protein activator like 2 (RASAL2), transcript variant X7, mRNA
Length=10343
Score = 32.2 bits (16), Expect = 4.7
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 40 AGACTTTATGGTCTTT 55
||||||||||||||||
Sbjct 602 AGACTTTATGGTCTTT 587
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 23357689320
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2