BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= CCCTTCTCGTGTTTGCTTAAA (evalue = 10)
Length=21
Score E
Sequences producing significant alignments: (Bits) Value
gi|1034601735|ref|XR_934577.2| PREDICTED: Homo sapiens protein ... 42.1 6e-04
gi|312434022|ref|NM_003620.3| Homo sapiens protein phosphatase,... 42.1 6e-04
gi|224493993|ref|NR_027138.1| Homo sapiens MRGPRG antisense RNA... 32.2 0.59
gi|1034625096|ref|XM_017027839.1| PREDICTED: Homo sapiens R-spo... 30.2 2.3
gi|1034678881|ref|XR_958990.2| PREDICTED: Homo sapiens uncharac... 28.2 9.2
gi|226693322|ref|NM_001014440.3| Homo sapiens outer dense fiber... 28.2 9.2
gi|575403058|ref|NM_033360.3| Homo sapiens Kirsten rat sarcoma ... 28.2 9.2
gi|575403057|ref|NM_004985.4| Homo sapiens Kirsten rat sarcoma ... 28.2 9.2
gi|1034656886|ref|XM_005249847.3| PREDICTED: Homo sapiens amino... 28.2 9.2
gi|1034565192|ref|XR_947722.2| PREDICTED: Homo sapiens uncharac... 28.2 9.2
> gi|1034601735|ref|XR_934577.2| PREDICTED: Homo sapiens protein
phosphatase, Mg2+/Mn2+ dependent 1D (PPM1D), transcript variant
X1, misc_RNA
Length=4885
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CCCTTCTCGTGTTTGCTTAAA 21
|||||||||||||||||||||
Sbjct 2924 CCCTTCTCGTGTTTGCTTAAA 2944
> gi|312434022|ref|NM_003620.3| Homo sapiens protein phosphatase,
Mg2+/Mn2+ dependent 1D (PPM1D), mRNA
Length=4790
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CCCTTCTCGTGTTTGCTTAAA 21
|||||||||||||||||||||
Sbjct 2817 CCCTTCTCGTGTTTGCTTAAA 2837
> gi|224493993|ref|NR_027138.1| Homo sapiens MRGPRG antisense RNA
1 (MRGPRG-AS1), long non-coding RNA
Length=1790
Score = 32.2 bits (16), Expect = 0.59
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 1 CCCTTCTCGTGTTTGC 16
||||||||||||||||
Sbjct 1172 CCCTTCTCGTGTTTGC 1187
> gi|1034625096|ref|XM_017027839.1| PREDICTED: Homo sapiens R-spondin
4 (RSPO4), transcript variant X1, mRNA
Length=2567
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 4 TTCTCGTGTTTGCTT 18
|||||||||||||||
Sbjct 2361 TTCTCGTGTTTGCTT 2375
> gi|1034678881|ref|XR_958990.2| PREDICTED: Homo sapiens uncharacterized
LOC105378916 (LOC105378916), ncRNA
Length=4530
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 CTCGTGTTTGCTTA 19
||||||||||||||
Sbjct 1079 CTCGTGTTTGCTTA 1066
> gi|226693322|ref|NM_001014440.3| Homo sapiens outer dense fiber
of sperm tails 3B (ODF3B), mRNA
Length=970
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 8 CGTGTTTGCTTAAA 21
||||||||||||||
Sbjct 925 CGTGTTTGCTTAAA 938
> gi|575403058|ref|NM_033360.3| Homo sapiens Kirsten rat sarcoma
viral oncogene homolog (KRAS), transcript variant a, mRNA
Length=5889
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 8 CGTGTTTGCTTAAA 21
||||||||||||||
Sbjct 5593 CGTGTTTGCTTAAA 5606
> gi|575403057|ref|NM_004985.4| Homo sapiens Kirsten rat sarcoma
viral oncogene homolog (KRAS), transcript variant b, mRNA
Length=5765
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 8 CGTGTTTGCTTAAA 21
||||||||||||||
Sbjct 5469 CGTGTTTGCTTAAA 5482
> gi|1034656886|ref|XM_005249847.3| PREDICTED: Homo sapiens aminoacyl
tRNA synthetase complex interacting multifunctional protein
2 (AIMP2), transcript variant X1, mRNA
Length=1433
Score = 28.2 bits (14), Expect = 9.2
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 3 CTTCTCGTGTTTGCTTAA 20
|||||| |||||||||||
Sbjct 337 CTTCTCTTGTTTGCTTAA 320
> gi|1034565192|ref|XR_947722.2| PREDICTED: Homo sapiens uncharacterized
LOC105378916 (LOC105378916), ncRNA
Length=4526
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 CTCGTGTTTGCTTA 19
||||||||||||||
Sbjct 1079 CTCGTGTTTGCTTA 1066
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 2921475425
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2