BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= CCCGTCACCTCACATCATTC (evalue = 10)
Length=20
Score E
Sequences producing significant alignments: (Bits) Value
gi|1034608395|ref|XM_017026935.1| PREDICTED: Homo sapiens prote... 40.1 0.002
gi|324021715|ref|NM_001204284.1| Homo sapiens protein phosphata... 40.1 0.002
gi|324021714|ref|NM_006247.3| Homo sapiens protein phosphatase ... 40.1 0.002
gi|1034683187|ref|XR_001732714.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|1034694078|ref|XR_001757301.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|1034585501|ref|XR_001749842.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|1034647829|ref|XR_001742908.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
> gi|1034608395|ref|XM_017026935.1| PREDICTED: Homo sapiens protein
phosphatase 5 catalytic subunit (PPP5C), transcript variant
X1, mRNA
Length=2255
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 CCCGTCACCTCACATCATTC 20
||||||||||||||||||||
Sbjct 1758 CCCGTCACCTCACATCATTC 1739
> gi|324021715|ref|NM_001204284.1| Homo sapiens protein phosphatase
5 catalytic subunit (PPP5C), transcript variant 2, mRNA
Length=2166
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 CCCGTCACCTCACATCATTC 20
||||||||||||||||||||
Sbjct 1546 CCCGTCACCTCACATCATTC 1527
> gi|324021714|ref|NM_006247.3| Homo sapiens protein phosphatase
5 catalytic subunit (PPP5C), transcript variant 1, mRNA
Length=2232
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 CCCGTCACCTCACATCATTC 20
||||||||||||||||||||
Sbjct 1612 CCCGTCACCTCACATCATTC 1593
> gi|1034683187|ref|XR_001732714.1| PREDICTED: Homo sapiens uncharacterized
LOC105370168 (LOC105370168), ncRNA
Length=2641
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 GTCACCTCACATCA 17
||||||||||||||
Sbjct 540 GTCACCTCACATCA 527
> gi|1034694078|ref|XR_001757301.1| PREDICTED: Homo sapiens uncharacterized
LOC107986456 (LOC107986456), ncRNA
Length=2028
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 ACCTCACATCATTC 20
||||||||||||||
Sbjct 588 ACCTCACATCATTC 575
> gi|1034585501|ref|XR_001749842.1| PREDICTED: Homo sapiens uncharacterized
LOC105370168 (LOC105370168), ncRNA
Length=2431
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 GTCACCTCACATCA 17
||||||||||||||
Sbjct 540 GTCACCTCACATCA 527
> gi|1034647829|ref|XR_001742908.1| PREDICTED: Homo sapiens uncharacterized
LOC107986456 (LOC107986456), ncRNA
Length=2028
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 ACCTCACATCATTC 20
||||||||||||||
Sbjct 588 ACCTCACATCATTC 575
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 2337180340
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2