BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= CCCAAGTGCAATATACAGTATCTCGAGATACTGTATATTGCACTTGGGTTTTT (evalue = 10)
Length=53
Score E
Sequences producing significant alignments: (Bits) Value
gi|1034568642|ref|XM_011539920.2| PREDICTED: Homo sapiens centr... 44.1 0.001
gi|187608536|ref|NM_018131.4| Homo sapiens centrosomal protein ... 44.1 0.001
gi|1034568640|ref|XM_017016372.1| PREDICTED: Homo sapiens centr... 44.1 0.001
gi|1034568643|ref|XM_017016373.1| PREDICTED: Homo sapiens centr... 44.1 0.001
gi|767963186|ref|XM_011539918.1| PREDICTED: Homo sapiens centro... 44.1 0.001
gi|187608544|ref|NM_001127182.1| Homo sapiens centrosomal prote... 44.1 0.001
gi|767963188|ref|XM_011539919.1| PREDICTED: Homo sapiens centro... 44.1 0.001
gi|228008411|ref|NM_001139444.2| Homo sapiens trafficking prote... 34.2 1.1
gi|1034664719|ref|XM_005251869.4| PREDICTED: Homo sapiens trans... 32.2 4.2
gi|209447094|ref|NM_013390.2| Homo sapiens transmembrane protei... 32.2 4.2
gi|209447095|ref|NM_001135820.1| Homo sapiens transmembrane pro... 32.2 4.2
> gi|1034568642|ref|XM_011539920.2| PREDICTED: Homo sapiens centrosomal
protein 55 (CEP55), transcript variant X4, mRNA
Length=2348
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 1 CCCAAGTGCAATATACAGTATC 22
||||||||||||||||||||||
Sbjct 1333 CCCAAGTGCAATATACAGTATC 1354
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 27 GATACTGTATATTGCACTTGGG 48
||||||||||||||||||||||
Sbjct 1354 GATACTGTATATTGCACTTGGG 1333
> gi|187608536|ref|NM_018131.4| Homo sapiens centrosomal protein
55 (CEP55), transcript variant 1, mRNA
Length=2656
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 1 CCCAAGTGCAATATACAGTATC 22
||||||||||||||||||||||
Sbjct 1625 CCCAAGTGCAATATACAGTATC 1646
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 27 GATACTGTATATTGCACTTGGG 48
||||||||||||||||||||||
Sbjct 1646 GATACTGTATATTGCACTTGGG 1625
> gi|1034568640|ref|XM_017016372.1| PREDICTED: Homo sapiens centrosomal
protein 55 (CEP55), transcript variant X3, mRNA
Length=2494
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 1 CCCAAGTGCAATATACAGTATC 22
||||||||||||||||||||||
Sbjct 1479 CCCAAGTGCAATATACAGTATC 1500
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 27 GATACTGTATATTGCACTTGGG 48
||||||||||||||||||||||
Sbjct 1500 GATACTGTATATTGCACTTGGG 1479
> gi|1034568643|ref|XM_017016373.1| PREDICTED: Homo sapiens centrosomal
protein 55 (CEP55), transcript variant X5, mRNA
Length=2516
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 1 CCCAAGTGCAATATACAGTATC 22
||||||||||||||||||||||
Sbjct 1501 CCCAAGTGCAATATACAGTATC 1522
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 27 GATACTGTATATTGCACTTGGG 48
||||||||||||||||||||||
Sbjct 1522 GATACTGTATATTGCACTTGGG 1501
> gi|767963186|ref|XM_011539918.1| PREDICTED: Homo sapiens centrosomal
protein 55 (CEP55), transcript variant X1, mRNA
Length=2654
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 1 CCCAAGTGCAATATACAGTATC 22
||||||||||||||||||||||
Sbjct 1639 CCCAAGTGCAATATACAGTATC 1660
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 27 GATACTGTATATTGCACTTGGG 48
||||||||||||||||||||||
Sbjct 1660 GATACTGTATATTGCACTTGGG 1639
> gi|187608544|ref|NM_001127182.1| Homo sapiens centrosomal protein
55 (CEP55), transcript variant 2, mRNA
Length=2534
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 1 CCCAAGTGCAATATACAGTATC 22
||||||||||||||||||||||
Sbjct 1503 CCCAAGTGCAATATACAGTATC 1524
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 27 GATACTGTATATTGCACTTGGG 48
||||||||||||||||||||||
Sbjct 1524 GATACTGTATATTGCACTTGGG 1503
> gi|767963188|ref|XM_011539919.1| PREDICTED: Homo sapiens centrosomal
protein 55 (CEP55), transcript variant X2, mRNA
Length=2522
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 1 CCCAAGTGCAATATACAGTATC 22
||||||||||||||||||||||
Sbjct 1507 CCCAAGTGCAATATACAGTATC 1528
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 27 GATACTGTATATTGCACTTGGG 48
||||||||||||||||||||||
Sbjct 1528 GATACTGTATATTGCACTTGGG 1507
> gi|228008411|ref|NM_001139444.2| Homo sapiens trafficking protein
particle complex 3 like (TRAPPC3L), mRNA
Length=1118
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 26 AGATACTGTATATTGCA 42
|||||||||||||||||
Sbjct 1062 AGATACTGTATATTGCA 1078
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 7 TGCAATATACAGTATCT 23
|||||||||||||||||
Sbjct 1078 TGCAATATACAGTATCT 1062
> gi|1034664719|ref|XM_005251869.4| PREDICTED: Homo sapiens transmembrane
protein 2 (TMEM2), transcript variant X1, mRNA
Length=5951
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 38 TTGCACTTGGGTTTTT 53
||||||||||||||||
Sbjct 5224 TTGCACTTGGGTTTTT 5239
> gi|209447094|ref|NM_013390.2| Homo sapiens transmembrane protein
2 (TMEM2), transcript variant 1, mRNA
Length=6540
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 38 TTGCACTTGGGTTTTT 53
||||||||||||||||
Sbjct 5591 TTGCACTTGGGTTTTT 5606
> gi|209447095|ref|NM_001135820.1| Homo sapiens transmembrane protein
2 (TMEM2), transcript variant 2, mRNA
Length=6351
Score = 32.2 bits (16), Expect = 4.2
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 38 TTGCACTTGGGTTTTT 53
||||||||||||||||
Sbjct 5402 TTGCACTTGGGTTTTT 5417
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 21028271724
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2