BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= CCCAACTACTGCGACCAGAT (evalue = 10)
Length=20
Score E
Sequences producing significant alignments: (Bits) Value
gi|1034608395|ref|XM_017026935.1| PREDICTED: Homo sapiens prote... 40.1 0.002
gi|324021715|ref|NM_001204284.1| Homo sapiens protein phosphata... 40.1 0.002
gi|324021714|ref|NM_006247.3| Homo sapiens protein phosphatase ... 40.1 0.002
gi|1034664918|ref|XR_929762.2| PREDICTED: Homo sapiens ST6 N-ac... 30.2 1.9
gi|88999589|ref|NM_175039.3| Homo sapiens ST6 N-acetylgalactosa... 30.2 1.9
gi|88999588|ref|NM_175040.3| Homo sapiens ST6 N-acetylgalactosa... 30.2 1.9
gi|1034664916|ref|XM_011518527.2| PREDICTED: Homo sapiens ST6 N... 30.2 1.9
gi|1034664917|ref|XM_011518529.2| PREDICTED: Homo sapiens ST6 N... 30.2 1.9
gi|208973259|ref|NM_058238.2| Homo sapiens Wnt family member 7B... 28.2 7.3
gi|768025718|ref|XM_011530366.1| PREDICTED: Homo sapiens Wnt fa... 28.2 7.3
gi|34328912|ref|NM_004625.3| Homo sapiens Wnt family member 7A ... 28.2 7.3
gi|1034635380|ref|XM_011534091.2| PREDICTED: Homo sapiens Wnt f... 28.2 7.3
> gi|1034608395|ref|XM_017026935.1| PREDICTED: Homo sapiens protein
phosphatase 5 catalytic subunit (PPP5C), transcript variant
X1, mRNA
Length=2255
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 CCCAACTACTGCGACCAGAT 20
||||||||||||||||||||
Sbjct 1443 CCCAACTACTGCGACCAGAT 1462
> gi|324021715|ref|NM_001204284.1| Homo sapiens protein phosphatase
5 catalytic subunit (PPP5C), transcript variant 2, mRNA
Length=2166
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 CCCAACTACTGCGACCAGAT 20
||||||||||||||||||||
Sbjct 1382 CCCAACTACTGCGACCAGAT 1401
> gi|324021714|ref|NM_006247.3| Homo sapiens protein phosphatase
5 catalytic subunit (PPP5C), transcript variant 1, mRNA
Length=2232
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 CCCAACTACTGCGACCAGAT 20
||||||||||||||||||||
Sbjct 1448 CCCAACTACTGCGACCAGAT 1467
> gi|1034664918|ref|XR_929762.2| PREDICTED: Homo sapiens ST6 N-acetylgalactosaminide
alpha-2,6-sialyltransferase 4 (ST6GALNAC4),
transcript variant X3, misc_RNA
Length=1186
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 6 CTACTGCGACCAGAT 20
|||||||||||||||
Sbjct 941 CTACTGCGACCAGAT 955
> gi|88999589|ref|NM_175039.3| Homo sapiens ST6 N-acetylgalactosaminide
alpha-2,6-sialyltransferase 4 (ST6GALNAC4), transcript
variant 1, mRNA
Length=1717
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 6 CTACTGCGACCAGAT 20
|||||||||||||||
Sbjct 846 CTACTGCGACCAGAT 860
> gi|88999588|ref|NM_175040.3| Homo sapiens ST6 N-acetylgalactosaminide
alpha-2,6-sialyltransferase 4 (ST6GALNAC4), transcript
variant 2, mRNA
Length=1630
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 6 CTACTGCGACCAGAT 20
|||||||||||||||
Sbjct 759 CTACTGCGACCAGAT 773
> gi|1034664916|ref|XM_011518527.2| PREDICTED: Homo sapiens ST6
N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 (ST6GALNAC4),
transcript variant X1, mRNA
Length=1783
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 6 CTACTGCGACCAGAT 20
|||||||||||||||
Sbjct 938 CTACTGCGACCAGAT 952
> gi|1034664917|ref|XM_011518529.2| PREDICTED: Homo sapiens ST6
N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 (ST6GALNAC4),
transcript variant X2, mRNA
Length=1814
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 6 CTACTGCGACCAGAT 20
|||||||||||||||
Sbjct 941 CTACTGCGACCAGAT 955
> gi|208973259|ref|NM_058238.2| Homo sapiens Wnt family member
7B (WNT7B), mRNA
Length=3928
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 CCCAACTACTGCGA 14
||||||||||||||
Sbjct 1197 CCCAACTACTGCGA 1210
> gi|768025718|ref|XM_011530366.1| PREDICTED: Homo sapiens Wnt
family member 7B (WNT7B), transcript variant X1, mRNA
Length=3683
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 CCCAACTACTGCGA 14
||||||||||||||
Sbjct 962 CCCAACTACTGCGA 975
> gi|34328912|ref|NM_004625.3| Homo sapiens Wnt family member 7A
(WNT7A), mRNA
Length=1732
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 CCCAACTACTGCGA 14
||||||||||||||
Sbjct 1128 CCCAACTACTGCGA 1141
> gi|1034635380|ref|XM_011534091.2| PREDICTED: Homo sapiens Wnt
family member 7A (WNT7A), transcript variant X1, mRNA
Length=1938
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 CCCAACTACTGCGA 14
||||||||||||||
Sbjct 875 CCCAACTACTGCGA 888
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 2337180340
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2