BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= CCATCAAATCCAAAGTCGT (evalue = 10)
Length=19
Score E
Sequences producing significant alignments: (Bits) Value
gi|1034688926|ref|XR_932198.2| PREDICTED: Homo sapiens uncharac... 30.2 1.4
gi|1034688925|ref|XR_932190.2| PREDICTED: Homo sapiens uncharac... 30.2 1.4
gi|657406249|ref|NM_001164342.2| Homo sapiens zinc finger and B... 30.2 1.4
gi|657406253|ref|NM_001164347.2| Homo sapiens zinc finger and B... 30.2 1.4
gi|657406259|ref|NM_001164346.2| Homo sapiens zinc finger and B... 30.2 1.4
gi|657406248|ref|NM_001164344.2| Homo sapiens zinc finger and B... 30.2 1.4
gi|657940863|ref|NM_001164345.2| Homo sapiens zinc finger and B... 30.2 1.4
gi|657406293|ref|NR_121662.1| Homo sapiens zinc finger and BTB ... 30.2 1.4
gi|657406254|ref|NM_001164343.2| Homo sapiens zinc finger and B... 30.2 1.4
gi|657940864|ref|NM_015642.5| Homo sapiens zinc finger and BTB ... 30.2 1.4
gi|1034619532|ref|XR_923486.2| PREDICTED: Homo sapiens uncharac... 30.2 1.4
gi|1034619531|ref|XR_923485.2| PREDICTED: Homo sapiens uncharac... 30.2 1.4
gi|1034689713|ref|XR_919918.2| PREDICTED: Homo sapiens uncharac... 28.2 5.5
gi|1034680405|ref|XR_959277.2| PREDICTED: Homo sapiens uncharac... 28.2 5.5
gi|1034626701|ref|XR_937298.2| PREDICTED: Homo sapiens uncharac... 28.2 5.5
gi|767994736|ref|XM_011524796.1| PREDICTED: Homo sapiens galect... 28.2 5.5
gi|1034584822|ref|XM_017020707.1| PREDICTED: Homo sapiens serpi... 28.2 5.5
gi|53692180|ref|NM_033624.2| Homo sapiens F-box protein 21 (FBX... 28.2 5.5
gi|53692181|ref|NM_015002.2| Homo sapiens F-box protein 21 (FBX... 28.2 5.5
gi|1034578647|ref|XM_017019039.1| PREDICTED: Homo sapiens F-box... 28.2 5.5
gi|1034578643|ref|XM_017019037.1| PREDICTED: Homo sapiens F-box... 28.2 5.5
gi|1034578645|ref|XM_017019038.1| PREDICTED: Homo sapiens F-box... 28.2 5.5
gi|156139126|ref|NM_024942.3| Homo sapiens chromosome 10 open r... 28.2 5.5
gi|1034570841|ref|XR_930708.2| PREDICTED: Homo sapiens uncharac... 28.2 5.5
gi|1034649711|ref|XR_001743307.1| PREDICTED: Homo sapiens SNF2 ... 28.2 5.5
gi|1034632927|ref|XM_006713610.2| PREDICTED: Homo sapiens glyco... 28.2 5.5
gi|1034632928|ref|XM_006713611.2| PREDICTED: Homo sapiens glyco... 28.2 5.5
gi|1034563137|ref|XM_005273343.3| PREDICTED: Homo sapiens TATA-... 28.2 5.5
gi|1034563136|ref|XR_001737526.1| PREDICTED: Homo sapiens TATA-... 28.2 5.5
gi|1034563134|ref|XM_017002760.1| PREDICTED: Homo sapiens TATA-... 28.2 5.5
gi|1034563131|ref|XM_006711613.3| PREDICTED: Homo sapiens TATA-... 28.2 5.5
gi|319996596|ref|NM_005681.3| Homo sapiens TATA-box binding pro... 28.2 5.5
gi|578801677|ref|XM_006711612.1| PREDICTED: Homo sapiens TATA-b... 28.2 5.5
gi|1034563129|ref|XM_017002758.1| PREDICTED: Homo sapiens TATA-... 28.2 5.5
gi|1034563132|ref|XM_017002759.1| PREDICTED: Homo sapiens TATA-... 28.2 5.5
gi|319996598|ref|NM_001201536.1| Homo sapiens TATA-box binding ... 28.2 5.5
gi|319996597|ref|NM_139352.2| Homo sapiens TATA-box binding pro... 28.2 5.5
gi|219842258|ref|NM_007123.5| Homo sapiens Usher syndrome 2A (a... 28.2 5.5
gi|219842265|ref|NM_206933.2| Homo sapiens Usher syndrome 2A (a... 28.2 5.5
> gi|1034688926|ref|XR_932198.2| PREDICTED: Homo sapiens uncharacterized
LOC105373694 (LOC105373694), transcript variant X2,
ncRNA
Length=1459
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 1 CCATCAAATCCAAAG 15
|||||||||||||||
Sbjct 965 CCATCAAATCCAAAG 979
> gi|1034688925|ref|XR_932190.2| PREDICTED: Homo sapiens uncharacterized
LOC105373694 (LOC105373694), transcript variant X1,
ncRNA
Length=1452
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 1 CCATCAAATCCAAAG 15
|||||||||||||||
Sbjct 959 CCATCAAATCCAAAG 973
> gi|657406249|ref|NM_001164342.2| Homo sapiens zinc finger and
BTB domain containing 20 (ZBTB20), transcript variant 1, mRNA
Length=26911
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 3 ATCAAATCCAAAGTC 17
|||||||||||||||
Sbjct 19099 ATCAAATCCAAAGTC 19085
> gi|657406253|ref|NM_001164347.2| Homo sapiens zinc finger and
BTB domain containing 20 (ZBTB20), transcript variant 7, mRNA
Length=26952
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 3 ATCAAATCCAAAGTC 17
|||||||||||||||
Sbjct 19140 ATCAAATCCAAAGTC 19126
> gi|657406259|ref|NM_001164346.2| Homo sapiens zinc finger and
BTB domain containing 20 (ZBTB20), transcript variant 6, mRNA
Length=26930
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 3 ATCAAATCCAAAGTC 17
|||||||||||||||
Sbjct 19118 ATCAAATCCAAAGTC 19104
> gi|657406248|ref|NM_001164344.2| Homo sapiens zinc finger and
BTB domain containing 20 (ZBTB20), transcript variant 4, mRNA
Length=27337
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 3 ATCAAATCCAAAGTC 17
|||||||||||||||
Sbjct 19525 ATCAAATCCAAAGTC 19511
> gi|657940863|ref|NM_001164345.2| Homo sapiens zinc finger and
BTB domain containing 20 (ZBTB20), transcript variant 5, mRNA
Length=27291
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 3 ATCAAATCCAAAGTC 17
|||||||||||||||
Sbjct 19479 ATCAAATCCAAAGTC 19465
> gi|657406293|ref|NR_121662.1| Homo sapiens zinc finger and BTB
domain containing 20 (ZBTB20), transcript variant 8, non-coding
RNA
Length=25393
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 3 ATCAAATCCAAAGTC 17
|||||||||||||||
Sbjct 17581 ATCAAATCCAAAGTC 17567
> gi|657406254|ref|NM_001164343.2| Homo sapiens zinc finger and
BTB domain containing 20 (ZBTB20), transcript variant 3, mRNA
Length=27373
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 3 ATCAAATCCAAAGTC 17
|||||||||||||||
Sbjct 19561 ATCAAATCCAAAGTC 19547
> gi|657940864|ref|NM_015642.5| Homo sapiens zinc finger and BTB
domain containing 20 (ZBTB20), transcript variant 2, mRNA
Length=27135
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 3 ATCAAATCCAAAGTC 17
|||||||||||||||
Sbjct 19323 ATCAAATCCAAAGTC 19309
> gi|1034619532|ref|XR_923486.2| PREDICTED: Homo sapiens uncharacterized
LOC105373694 (LOC105373694), transcript variant X2,
ncRNA
Length=1459
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 1 CCATCAAATCCAAAG 15
|||||||||||||||
Sbjct 965 CCATCAAATCCAAAG 979
> gi|1034619531|ref|XR_923485.2| PREDICTED: Homo sapiens uncharacterized
LOC105373694 (LOC105373694), transcript variant X1,
ncRNA
Length=1452
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 1 CCATCAAATCCAAAG 15
|||||||||||||||
Sbjct 959 CCATCAAATCCAAAG 973
> gi|1034689713|ref|XR_919918.2| PREDICTED: Homo sapiens uncharacterized
LOC105372549 (LOC105372549), ncRNA
Length=1182
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 CCATCAAATCCAAA 14
||||||||||||||
Sbjct 186 CCATCAAATCCAAA 199
> gi|1034680405|ref|XR_959277.2| PREDICTED: Homo sapiens uncharacterized
LOC105376435 (LOC105376435), ncRNA
Length=537
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 CCATCAAATCCAAA 14
||||||||||||||
Sbjct 409 CCATCAAATCCAAA 396
> gi|1034626701|ref|XR_937298.2| PREDICTED: Homo sapiens uncharacterized
LOC105372549 (LOC105372549), ncRNA
Length=1182
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 CCATCAAATCCAAA 14
||||||||||||||
Sbjct 186 CCATCAAATCCAAA 199
> gi|767994736|ref|XM_011524796.1| PREDICTED: Homo sapiens galectin
9 (LGALS9), transcript variant X6, mRNA
Length=2125
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 ATCAAATCCAAAGT 16
||||||||||||||
Sbjct 1651 ATCAAATCCAAAGT 1638
> gi|1034584822|ref|XM_017020707.1| PREDICTED: Homo sapiens serpin
family E member 3 (SERPINE3), transcript variant X1, mRNA
Length=10689
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 CCATCAAATCCAAA 14
||||||||||||||
Sbjct 440 CCATCAAATCCAAA 453
> gi|53692180|ref|NM_033624.2| Homo sapiens F-box protein 21 (FBXO21),
transcript variant 1, mRNA
Length=4248
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 TCAAATCCAAAGTC 17
||||||||||||||
Sbjct 3635 TCAAATCCAAAGTC 3648
> gi|53692181|ref|NM_015002.2| Homo sapiens F-box protein 21 (FBXO21),
transcript variant 2, mRNA
Length=4227
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 TCAAATCCAAAGTC 17
||||||||||||||
Sbjct 3614 TCAAATCCAAAGTC 3627
> gi|1034578647|ref|XM_017019039.1| PREDICTED: Homo sapiens F-box
protein 21 (FBXO21), transcript variant X3, mRNA
Length=4135
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 TCAAATCCAAAGTC 17
||||||||||||||
Sbjct 3230 TCAAATCCAAAGTC 3243
> gi|1034578643|ref|XM_017019037.1| PREDICTED: Homo sapiens F-box
protein 21 (FBXO21), transcript variant X1, mRNA
Length=4365
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 TCAAATCCAAAGTC 17
||||||||||||||
Sbjct 3460 TCAAATCCAAAGTC 3473
> gi|1034578645|ref|XM_017019038.1| PREDICTED: Homo sapiens F-box
protein 21 (FBXO21), transcript variant X2, mRNA
Length=4344
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 4 TCAAATCCAAAGTC 17
||||||||||||||
Sbjct 3439 TCAAATCCAAAGTC 3452
> gi|156139126|ref|NM_024942.3| Homo sapiens chromosome 10 open
reading frame 88 (C10orf88), mRNA
Length=3102
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 ATCAAATCCAAAGT 16
||||||||||||||
Sbjct 2201 ATCAAATCCAAAGT 2188
> gi|1034570841|ref|XR_930708.2| PREDICTED: Homo sapiens uncharacterized
LOC105376435 (LOC105376435), ncRNA
Length=537
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 CCATCAAATCCAAA 14
||||||||||||||
Sbjct 409 CCATCAAATCCAAA 396
> gi|1034649711|ref|XR_001743307.1| PREDICTED: Homo sapiens SNF2
histone linker PHD RING helicase (SHPRH), transcript variant
X15, misc_RNA
Length=20158
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 CCATCAAATCCAAA 14
||||||||||||||
Sbjct 10267 CCATCAAATCCAAA 10280
> gi|1034632927|ref|XM_006713610.2| PREDICTED: Homo sapiens glycogen
synthase kinase 3 beta (GSK3B), transcript variant X1,
mRNA
Length=7139
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 CATCAAATCCAAAG 15
||||||||||||||
Sbjct 6739 CATCAAATCCAAAG 6726
> gi|1034632928|ref|XM_006713611.2| PREDICTED: Homo sapiens glycogen
synthase kinase 3 beta (GSK3B), transcript variant X2,
mRNA
Length=7100
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 CATCAAATCCAAAG 15
||||||||||||||
Sbjct 6700 CATCAAATCCAAAG 6687
> gi|1034563137|ref|XM_005273343.3| PREDICTED: Homo sapiens TATA-box
binding protein associated factor, RNA polymerase I subunit
A (TAF1A), transcript variant X7, mRNA
Length=3523
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 CCATCAAATCCAAA 14
||||||||||||||
Sbjct 1180 CCATCAAATCCAAA 1193
> gi|1034563136|ref|XR_001737526.1| PREDICTED: Homo sapiens TATA-box
binding protein associated factor, RNA polymerase I subunit
A (TAF1A), transcript variant X6, misc_RNA
Length=2114
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 CCATCAAATCCAAA 14
||||||||||||||
Sbjct 1180 CCATCAAATCCAAA 1193
> gi|1034563134|ref|XM_017002760.1| PREDICTED: Homo sapiens TATA-box
binding protein associated factor, RNA polymerase I subunit
A (TAF1A), transcript variant X5, mRNA
Length=1691
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 CCATCAAATCCAAA 14
||||||||||||||
Sbjct 794 CCATCAAATCCAAA 807
> gi|1034563131|ref|XM_006711613.3| PREDICTED: Homo sapiens TATA-box
binding protein associated factor, RNA polymerase I subunit
A (TAF1A), transcript variant X3, mRNA
Length=1927
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 CCATCAAATCCAAA 14
||||||||||||||
Sbjct 1030 CCATCAAATCCAAA 1043
> gi|319996596|ref|NM_005681.3| Homo sapiens TATA-box binding protein
associated factor, RNA polymerase I subunit A (TAF1A),
transcript variant 1, mRNA
Length=1931
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 CCATCAAATCCAAA 14
||||||||||||||
Sbjct 1017 CCATCAAATCCAAA 1030
> gi|578801677|ref|XM_006711612.1| PREDICTED: Homo sapiens TATA-box
binding protein associated factor, RNA polymerase I subunit
A (TAF1A), transcript variant X1, mRNA
Length=1963
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 CCATCAAATCCAAA 14
||||||||||||||
Sbjct 1066 CCATCAAATCCAAA 1079
> gi|1034563129|ref|XM_017002758.1| PREDICTED: Homo sapiens TATA-box
binding protein associated factor, RNA polymerase I subunit
A (TAF1A), transcript variant X2, mRNA
Length=1698
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 CCATCAAATCCAAA 14
||||||||||||||
Sbjct 1066 CCATCAAATCCAAA 1079
> gi|1034563132|ref|XM_017002759.1| PREDICTED: Homo sapiens TATA-box
binding protein associated factor, RNA polymerase I subunit
A (TAF1A), transcript variant X4, mRNA
Length=1706
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 CCATCAAATCCAAA 14
||||||||||||||
Sbjct 986 CCATCAAATCCAAA 999
> gi|319996598|ref|NM_001201536.1| Homo sapiens TATA-box binding
protein associated factor, RNA polymerase I subunit A (TAF1A),
transcript variant 3, mRNA
Length=1966
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 CCATCAAATCCAAA 14
||||||||||||||
Sbjct 1017 CCATCAAATCCAAA 1030
> gi|319996597|ref|NM_139352.2| Homo sapiens TATA-box binding protein
associated factor, RNA polymerase I subunit A (TAF1A),
transcript variant 2, mRNA
Length=1796
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 CCATCAAATCCAAA 14
||||||||||||||
Sbjct 847 CCATCAAATCCAAA 860
> gi|219842258|ref|NM_007123.5| Homo sapiens Usher syndrome 2A
(autosomal recessive, mild) (USH2A), transcript variant 1, mRNA
Length=6332
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 ATCAAATCCAAAGT 16
||||||||||||||
Sbjct 3366 ATCAAATCCAAAGT 3353
> gi|219842265|ref|NM_206933.2| Homo sapiens Usher syndrome 2A
(autosomal recessive, mild) (USH2A), transcript variant 2, mRNA
Length=18883
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 3 ATCAAATCCAAAGT 16
||||||||||||||
Sbjct 3366 ATCAAATCCAAAGT 3353
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 1752885255
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2