BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= CCAGATTTAACCATTCCATAACTCGAGTTATGGAATGGTTAAATCTGGTTTTTT (evalue = 10)
Length=54
Score E
Sequences producing significant alignments: (Bits) Value
gi|92859700|ref|NM_004999.3| Homo sapiens myosin VI (MYO6), tra... 42.1 0.005
gi|1034650383|ref|XM_005248726.3| PREDICTED: Homo sapiens myosi... 42.1 0.005
gi|1034650381|ref|XM_017010899.1| PREDICTED: Homo sapiens myosi... 42.1 0.005
gi|1034650380|ref|XM_005248724.3| PREDICTED: Homo sapiens myosi... 42.1 0.005
gi|1034650379|ref|XM_005248722.3| PREDICTED: Homo sapiens myosi... 42.1 0.005
gi|1034650378|ref|XM_005248721.3| PREDICTED: Homo sapiens myosi... 42.1 0.005
gi|1034650377|ref|XM_005248720.3| PREDICTED: Homo sapiens myosi... 42.1 0.005
gi|1034650376|ref|XM_005248719.3| PREDICTED: Homo sapiens myosi... 42.1 0.005
gi|665505982|ref|NM_001300899.1| Homo sapiens myosin VI (MYO6),... 42.1 0.005
gi|472339086|ref|NM_001277333.1| Homo sapiens ankyrin repeat do... 34.2 1.1
gi|1034603920|ref|XM_017025720.1| PREDICTED: Homo sapiens ankyr... 34.2 1.1
gi|1034603922|ref|XR_001753188.1| PREDICTED: Homo sapiens ankyr... 34.2 1.1
gi|1022943332|ref|NR_136705.1| Homo sapiens Kruppel-like factor... 32.2 4.3
gi|585866494|ref|NR_110622.1| Homo sapiens uncharacterized LOC1... 32.2 4.3
gi|586598164|ref|NR_110621.1| Homo sapiens uncharacterized LOC1... 32.2 4.3
> gi|92859700|ref|NM_004999.3| Homo sapiens myosin VI (MYO6), transcript
variant 1, mRNA
Length=8662
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CCAGATTTAACCATTCCATAA 21
|||||||||||||||||||||
Sbjct 4201 CCAGATTTAACCATTCCATAA 4221
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TTATGGAATGGTTAAATCTGG 48
|||||||||||||||||||||
Sbjct 4221 TTATGGAATGGTTAAATCTGG 4201
> gi|1034650383|ref|XM_005248726.3| PREDICTED: Homo sapiens myosin
VI (MYO6), transcript variant X7, mRNA
Length=8580
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CCAGATTTAACCATTCCATAA 21
|||||||||||||||||||||
Sbjct 4121 CCAGATTTAACCATTCCATAA 4141
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TTATGGAATGGTTAAATCTGG 48
|||||||||||||||||||||
Sbjct 4141 TTATGGAATGGTTAAATCTGG 4121
> gi|1034650381|ref|XM_017010899.1| PREDICTED: Homo sapiens myosin
VI (MYO6), transcript variant X6, mRNA
Length=8610
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CCAGATTTAACCATTCCATAA 21
|||||||||||||||||||||
Sbjct 4151 CCAGATTTAACCATTCCATAA 4171
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TTATGGAATGGTTAAATCTGG 48
|||||||||||||||||||||
Sbjct 4171 TTATGGAATGGTTAAATCTGG 4151
> gi|1034650380|ref|XM_005248724.3| PREDICTED: Homo sapiens myosin
VI (MYO6), transcript variant X5, mRNA
Length=8637
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CCAGATTTAACCATTCCATAA 21
|||||||||||||||||||||
Sbjct 4178 CCAGATTTAACCATTCCATAA 4198
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TTATGGAATGGTTAAATCTGG 48
|||||||||||||||||||||
Sbjct 4198 TTATGGAATGGTTAAATCTGG 4178
> gi|1034650379|ref|XM_005248722.3| PREDICTED: Homo sapiens myosin
VI (MYO6), transcript variant X4, mRNA
Length=8649
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CCAGATTTAACCATTCCATAA 21
|||||||||||||||||||||
Sbjct 4190 CCAGATTTAACCATTCCATAA 4210
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TTATGGAATGGTTAAATCTGG 48
|||||||||||||||||||||
Sbjct 4210 TTATGGAATGGTTAAATCTGG 4190
> gi|1034650378|ref|XM_005248721.3| PREDICTED: Homo sapiens myosin
VI (MYO6), transcript variant X3, mRNA
Length=8664
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CCAGATTTAACCATTCCATAA 21
|||||||||||||||||||||
Sbjct 4205 CCAGATTTAACCATTCCATAA 4225
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TTATGGAATGGTTAAATCTGG 48
|||||||||||||||||||||
Sbjct 4225 TTATGGAATGGTTAAATCTGG 4205
> gi|1034650377|ref|XM_005248720.3| PREDICTED: Homo sapiens myosin
VI (MYO6), transcript variant X2, mRNA
Length=8676
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CCAGATTTAACCATTCCATAA 21
|||||||||||||||||||||
Sbjct 4217 CCAGATTTAACCATTCCATAA 4237
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TTATGGAATGGTTAAATCTGG 48
|||||||||||||||||||||
Sbjct 4237 TTATGGAATGGTTAAATCTGG 4217
> gi|1034650376|ref|XM_005248719.3| PREDICTED: Homo sapiens myosin
VI (MYO6), transcript variant X1, mRNA
Length=8703
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CCAGATTTAACCATTCCATAA 21
|||||||||||||||||||||
Sbjct 4244 CCAGATTTAACCATTCCATAA 4264
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TTATGGAATGGTTAAATCTGG 48
|||||||||||||||||||||
Sbjct 4264 TTATGGAATGGTTAAATCTGG 4244
> gi|665505982|ref|NM_001300899.1| Homo sapiens myosin VI (MYO6),
transcript variant 2, mRNA
Length=8609
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CCAGATTTAACCATTCCATAA 21
|||||||||||||||||||||
Sbjct 4148 CCAGATTTAACCATTCCATAA 4168
Score = 42.1 bits (21), Expect = 0.005
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 28 TTATGGAATGGTTAAATCTGG 48
|||||||||||||||||||||
Sbjct 4168 TTATGGAATGGTTAAATCTGG 4148
> gi|472339086|ref|NM_001277333.1| Homo sapiens ankyrin repeat
domain 62 (ANKRD62), mRNA
Length=4748
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 38 GTTAAATCTGGTTTTTT 54
|||||||||||||||||
Sbjct 762 GTTAAATCTGGTTTTTT 746
> gi|1034603920|ref|XM_017025720.1| PREDICTED: Homo sapiens ankyrin
repeat domain 62 (ANKRD62), transcript variant X1, mRNA
Length=3694
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 38 GTTAAATCTGGTTTTTT 54
|||||||||||||||||
Sbjct 815 GTTAAATCTGGTTTTTT 799
> gi|1034603922|ref|XR_001753188.1| PREDICTED: Homo sapiens ankyrin
repeat domain 62 (ANKRD62), transcript variant X2, misc_RNA
Length=4496
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 38 GTTAAATCTGGTTTTTT 54
|||||||||||||||||
Sbjct 815 GTTAAATCTGGTTTTTT 799
> gi|1022943332|ref|NR_136705.1| Homo sapiens Kruppel-like factor
8 (KLF8), transcript variant 7, non-coding RNA
Length=12729
Score = 32.2 bits (16), Expect = 4.3
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 31 TGGAATGGTTAAATCT 46
||||||||||||||||
Sbjct 3624 TGGAATGGTTAAATCT 3639
Score = 32.2 bits (16), Expect = 4.3
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 3 AGATTTAACCATTCCA 18
||||||||||||||||
Sbjct 3639 AGATTTAACCATTCCA 3624
> gi|585866494|ref|NR_110622.1| Homo sapiens uncharacterized LOC100996635
(LOC100996635), transcript variant 2, long non-coding
RNA
Length=1576
Score = 32.2 bits (16), Expect = 4.3
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 31 TGGAATGGTTAAATCT 46
||||||||||||||||
Sbjct 1314 TGGAATGGTTAAATCT 1329
Score = 32.2 bits (16), Expect = 4.3
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 3 AGATTTAACCATTCCA 18
||||||||||||||||
Sbjct 1329 AGATTTAACCATTCCA 1314
> gi|586598164|ref|NR_110621.1| Homo sapiens uncharacterized LOC100996635
(LOC100996635), transcript variant 1, long non-coding
RNA
Length=1679
Score = 32.2 bits (16), Expect = 4.3
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 31 TGGAATGGTTAAATCT 46
||||||||||||||||
Sbjct 1417 TGGAATGGTTAAATCT 1432
Score = 32.2 bits (16), Expect = 4.3
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 3 AGATTTAACCATTCCA 18
||||||||||||||||
Sbjct 1432 AGATTTAACCATTCCA 1417
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 21612390383
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2