BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= CCAAGGAAGTGCAATTGCATA (evalue = 10)
Length=21
Score E
Sequences producing significant alignments: (Bits) Value
gi|442796430|ref|NM_014062.2| Homo sapiens NIN1/PSMD8 binding p... 42.1 6e-04
gi|442796465|ref|NR_074074.1| Homo sapiens NIN1/PSMD8 binding p... 42.1 6e-04
gi|1034699335|ref|XR_001736784.1| PREDICTED: Homo sapiens uncha... 28.2 9.2
gi|1034690565|ref|XR_920505.2| PREDICTED: Homo sapiens uncharac... 28.2 9.2
gi|1034684538|ref|XM_011508471.2| PREDICTED: Homo sapiens olfac... 28.2 9.2
gi|1034676956|ref|XM_011546670.2| PREDICTED: Homo sapiens olfac... 28.2 9.2
gi|1034676074|ref|XR_001755944.1| PREDICTED: Homo sapiens uncha... 28.2 9.2
gi|1034627914|ref|XR_937707.2| PREDICTED: Homo sapiens uncharac... 28.2 9.2
gi|1034554245|ref|XM_011546224.2| PREDICTED: Homo sapiens olfac... 28.2 9.2
gi|1034554236|ref|XM_011546215.2| PREDICTED: Homo sapiens olfac... 28.2 9.2
gi|1034554243|ref|XM_017030118.1| PREDICTED: Homo sapiens olfac... 28.2 9.2
gi|1034554241|ref|XM_017030117.1| PREDICTED: Homo sapiens olfac... 28.2 9.2
gi|1034554239|ref|XM_017030116.1| PREDICTED: Homo sapiens olfac... 28.2 9.2
gi|1034554234|ref|XM_017030114.1| PREDICTED: Homo sapiens olfac... 28.2 9.2
gi|1034554237|ref|XM_017030115.1| PREDICTED: Homo sapiens olfac... 28.2 9.2
gi|768041465|ref|XM_011546222.1| PREDICTED: Homo sapiens olfact... 28.2 9.2
gi|768041399|ref|XM_011546201.1| PREDICTED: Homo sapiens olfact... 28.2 9.2
gi|768041416|ref|XM_011546206.1| PREDICTED: Homo sapiens olfact... 28.2 9.2
gi|768041413|ref|XM_011546205.1| PREDICTED: Homo sapiens olfact... 28.2 9.2
gi|254281280|ref|NR_028067.1| Homo sapiens olfactory receptor f... 28.2 9.2
gi|669033263|ref|NM_001005241.3| Homo sapiens olfactory recepto... 28.2 9.2
gi|1034592498|ref|XM_011543799.2| PREDICTED: Homo sapiens olfac... 28.2 9.2
gi|589811523|ref|NM_001004723.2| Homo sapiens olfactory recepto... 28.2 9.2
> gi|442796430|ref|NM_014062.2| Homo sapiens NIN1/PSMD8 binding
protein 1 homolog (NOB1), transcript variant 1, mRNA
Length=1775
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CCAAGGAAGTGCAATTGCATA 21
|||||||||||||||||||||
Sbjct 1506 CCAAGGAAGTGCAATTGCATA 1526
> gi|442796465|ref|NR_074074.1| Homo sapiens NIN1/PSMD8 binding
protein 1 homolog (NOB1), transcript variant 2, non-coding
RNA
Length=1644
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 CCAAGGAAGTGCAATTGCATA 21
|||||||||||||||||||||
Sbjct 1375 CCAAGGAAGTGCAATTGCATA 1395
> gi|1034699335|ref|XR_001736784.1| PREDICTED: Homo sapiens uncharacterized
LOC107985681 (LOC107985681), ncRNA
Length=4619
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 AAGTGCAATTGCAT 20
||||||||||||||
Sbjct 2968 AAGTGCAATTGCAT 2955
> gi|1034690565|ref|XR_920505.2| PREDICTED: Homo sapiens uncharacterized
LOC105372799 (LOC105372799), ncRNA
Length=3437
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 CCAAGGAAGTGCAA 14
||||||||||||||
Sbjct 3019 CCAAGGAAGTGCAA 3032
> gi|1034684538|ref|XM_011508471.2| PREDICTED: Homo sapiens olfactory
receptor 4N4 (LOC105369274), mRNA
Length=1101
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 CCAAGGAAGTGCAA 14
||||||||||||||
Sbjct 447 CCAAGGAAGTGCAA 434
> gi|1034676956|ref|XM_011546670.2| PREDICTED: Homo sapiens olfactory
receptor 4N4 (LOC105369274), mRNA
Length=1112
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 CCAAGGAAGTGCAA 14
||||||||||||||
Sbjct 458 CCAAGGAAGTGCAA 445
> gi|1034676074|ref|XR_001755944.1| PREDICTED: Homo sapiens uncharacterized
LOC107985681 (LOC107985681), ncRNA
Length=4630
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 AAGTGCAATTGCAT 20
||||||||||||||
Sbjct 2977 AAGTGCAATTGCAT 2964
> gi|1034627914|ref|XR_937707.2| PREDICTED: Homo sapiens uncharacterized
LOC105372799 (LOC105372799), ncRNA
Length=3437
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 CCAAGGAAGTGCAA 14
||||||||||||||
Sbjct 3019 CCAAGGAAGTGCAA 3032
> gi|1034554245|ref|XM_011546224.2| PREDICTED: Homo sapiens olfactory
receptor 4N4 (LOC102723532), transcript variant X11,
mRNA
Length=1229
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 CCAAGGAAGTGCAA 14
||||||||||||||
Sbjct 575 CCAAGGAAGTGCAA 562
> gi|1034554236|ref|XM_011546215.2| PREDICTED: Homo sapiens olfactory
receptor 4N4 (LOC102723532), transcript variant X5, mRNA
Length=1113
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 CCAAGGAAGTGCAA 14
||||||||||||||
Sbjct 459 CCAAGGAAGTGCAA 446
> gi|1034554243|ref|XM_017030118.1| PREDICTED: Homo sapiens olfactory
receptor 4N4 (LOC102723532), transcript variant X10,
mRNA
Length=1434
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 CCAAGGAAGTGCAA 14
||||||||||||||
Sbjct 780 CCAAGGAAGTGCAA 767
> gi|1034554241|ref|XM_017030117.1| PREDICTED: Homo sapiens olfactory
receptor 4N4 (LOC102723532), transcript variant X8, mRNA
Length=1200
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 CCAAGGAAGTGCAA 14
||||||||||||||
Sbjct 546 CCAAGGAAGTGCAA 533
> gi|1034554239|ref|XM_017030116.1| PREDICTED: Homo sapiens olfactory
receptor 4N4 (LOC102723532), transcript variant X7, mRNA
Length=1224
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 CCAAGGAAGTGCAA 14
||||||||||||||
Sbjct 570 CCAAGGAAGTGCAA 557
> gi|1034554234|ref|XM_017030114.1| PREDICTED: Homo sapiens olfactory
receptor 4N4 (LOC102723532), transcript variant X1, mRNA
Length=1308
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 CCAAGGAAGTGCAA 14
||||||||||||||
Sbjct 654 CCAAGGAAGTGCAA 641
> gi|1034554237|ref|XM_017030115.1| PREDICTED: Homo sapiens olfactory
receptor 4N4 (LOC102723532), transcript variant X6, mRNA
Length=1068
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 CCAAGGAAGTGCAA 14
||||||||||||||
Sbjct 414 CCAAGGAAGTGCAA 401
> gi|768041465|ref|XM_011546222.1| PREDICTED: Homo sapiens olfactory
receptor 4N4 (LOC102723532), transcript variant X9, mRNA
Length=1067
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 CCAAGGAAGTGCAA 14
||||||||||||||
Sbjct 413 CCAAGGAAGTGCAA 400
> gi|768041399|ref|XM_011546201.1| PREDICTED: Homo sapiens olfactory
receptor 4N4 (LOC102723532), transcript variant X4, mRNA
Length=1866
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 CCAAGGAAGTGCAA 14
||||||||||||||
Sbjct 1212 CCAAGGAAGTGCAA 1199
> gi|768041416|ref|XM_011546206.1| PREDICTED: Homo sapiens olfactory
receptor 4N4 (LOC102723532), transcript variant X3, mRNA
Length=2254
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 CCAAGGAAGTGCAA 14
||||||||||||||
Sbjct 1600 CCAAGGAAGTGCAA 1587
> gi|768041413|ref|XM_011546205.1| PREDICTED: Homo sapiens olfactory
receptor 4N4 (LOC102723532), transcript variant X2, mRNA
Length=2277
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 CCAAGGAAGTGCAA 14
||||||||||||||
Sbjct 1623 CCAAGGAAGTGCAA 1610
> gi|254281280|ref|NR_028067.1| Homo sapiens olfactory receptor
family 4 subfamily N member 3 pseudogene (OR4N3P), non-coding
RNA
Length=937
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 CCAAGGAAGTGCAA 14
||||||||||||||
Sbjct 323 CCAAGGAAGTGCAA 310
> gi|669033263|ref|NM_001005241.3| Homo sapiens olfactory receptor
family 4 subfamily N member 4 (OR4N4), mRNA
Length=1434
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 CCAAGGAAGTGCAA 14
||||||||||||||
Sbjct 414 CCAAGGAAGTGCAA 401
> gi|1034592498|ref|XM_011543799.2| PREDICTED: Homo sapiens olfactory
receptor 4N4 (LOC105369274), mRNA
Length=1107
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 CCAAGGAAGTGCAA 14
||||||||||||||
Sbjct 453 CCAAGGAAGTGCAA 440
> gi|589811523|ref|NM_001004723.2| Homo sapiens olfactory receptor
family 4 subfamily N member 2 (OR4N2), mRNA
Length=1008
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 1 CCAAGGAAGTGCAA 14
||||||||||||||
Sbjct 407 CCAAGGAAGTGCAA 394
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 2921475425
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2