BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= CATGAGAAGTATGACAACAGCCT (evalue = 10)
Length=23
Score E
Sequences producing significant alignments: (Bits) Value
gi|576583514|ref|NM_001256799.2| Homo sapiens glyceraldehyde-3-... 46.1 5e-05
gi|576583523|ref|NM_001289746.1| Homo sapiens glyceraldehyde-3-... 46.1 5e-05
gi|576583510|ref|NM_002046.5| Homo sapiens glyceraldehyde-3-pho... 46.1 5e-05
gi|576583518|ref|NM_001289745.1| Homo sapiens glyceraldehyde-3-... 46.1 5e-05
gi|1034688012|ref|XR_001742167.1| PREDICTED: Homo sapiens uncha... 34.2 0.21
gi|1034688011|ref|XR_001742166.1| PREDICTED: Homo sapiens uncha... 34.2 0.21
gi|1034618637|ref|XR_001739290.1| PREDICTED: Homo sapiens uncha... 34.2 0.21
gi|1034618636|ref|XR_001739289.1| PREDICTED: Homo sapiens uncha... 34.2 0.21
gi|1034635374|ref|XM_011534085.2| PREDICTED: Homo sapiens Wnt f... 32.2 0.82
gi|1034635375|ref|XM_017007128.1| PREDICTED: Homo sapiens Wnt f... 32.2 0.82
gi|1034635377|ref|XM_011534086.2| PREDICTED: Homo sapiens Wnt f... 32.2 0.82
> gi|576583514|ref|NM_001256799.2| Homo sapiens glyceraldehyde-3-phosphate
dehydrogenase (GAPDH), transcript variant 2, mRNA
Length=1455
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Plus
Query 1 CATGAGAAGTATGACAACAGCCT 23
|||||||||||||||||||||||
Sbjct 631 CATGAGAAGTATGACAACAGCCT 653
> gi|576583523|ref|NM_001289746.1| Homo sapiens glyceraldehyde-3-phosphate
dehydrogenase (GAPDH), transcript variant 4, mRNA
Length=1407
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Plus
Query 1 CATGAGAAGTATGACAACAGCCT 23
|||||||||||||||||||||||
Sbjct 583 CATGAGAAGTATGACAACAGCCT 605
> gi|576583510|ref|NM_002046.5| Homo sapiens glyceraldehyde-3-phosphate
dehydrogenase (GAPDH), transcript variant 1, mRNA
Length=1421
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Plus
Query 1 CATGAGAAGTATGACAACAGCCT 23
|||||||||||||||||||||||
Sbjct 597 CATGAGAAGTATGACAACAGCCT 619
> gi|576583518|ref|NM_001289745.1| Homo sapiens glyceraldehyde-3-phosphate
dehydrogenase (GAPDH), transcript variant 3, mRNA
Length=1513
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%), Gaps = 0/23 (0%)
Strand=Plus/Plus
Query 1 CATGAGAAGTATGACAACAGCCT 23
|||||||||||||||||||||||
Sbjct 689 CATGAGAAGTATGACAACAGCCT 711
> gi|1034688012|ref|XR_001742167.1| PREDICTED: Homo sapiens uncharacterized
LOC107985853 (LOC107985853), transcript variant
X2, ncRNA
Length=4020
Score = 34.2 bits (17), Expect = 0.21
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 7 AAGTATGACAACAGCCT 23
|||||||||||||||||
Sbjct 2905 AAGTATGACAACAGCCT 2921
> gi|1034688011|ref|XR_001742166.1| PREDICTED: Homo sapiens uncharacterized
LOC107985853 (LOC107985853), transcript variant
X1, ncRNA
Length=4128
Score = 34.2 bits (17), Expect = 0.21
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 7 AAGTATGACAACAGCCT 23
|||||||||||||||||
Sbjct 3013 AAGTATGACAACAGCCT 3029
> gi|1034618637|ref|XR_001739290.1| PREDICTED: Homo sapiens uncharacterized
LOC107985853 (LOC107985853), transcript variant
X2, ncRNA
Length=4020
Score = 34.2 bits (17), Expect = 0.21
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 7 AAGTATGACAACAGCCT 23
|||||||||||||||||
Sbjct 2905 AAGTATGACAACAGCCT 2921
> gi|1034618636|ref|XR_001739289.1| PREDICTED: Homo sapiens uncharacterized
LOC107985853 (LOC107985853), transcript variant
X1, ncRNA
Length=4128
Score = 34.2 bits (17), Expect = 0.21
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 7 AAGTATGACAACAGCCT 23
|||||||||||||||||
Sbjct 3013 AAGTATGACAACAGCCT 3029
> gi|1034635374|ref|XM_011534085.2| PREDICTED: Homo sapiens Wnt
family member 5A (WNT5A), transcript variant X2, mRNA
Length=11166
Score = 32.2 bits (16), Expect = 0.82
Identities = 19/20 (95%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 CATGAGAAGTATGACAACAG 20
||||||| ||||||||||||
Sbjct 1166 CATGAGATGTATGACAACAG 1185
> gi|1034635375|ref|XM_017007128.1| PREDICTED: Homo sapiens Wnt
family member 5A (WNT5A), transcript variant X3, mRNA
Length=7795
Score = 32.2 bits (16), Expect = 0.82
Identities = 19/20 (95%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 CATGAGAAGTATGACAACAG 20
||||||| ||||||||||||
Sbjct 1166 CATGAGATGTATGACAACAG 1185
> gi|1034635377|ref|XM_011534086.2| PREDICTED: Homo sapiens Wnt
family member 5A (WNT5A), transcript variant X4, mRNA
Length=7790
Score = 32.2 bits (16), Expect = 0.82
Identities = 19/20 (95%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 CATGAGAAGTATGACAACAG 20
||||||| ||||||||||||
Sbjct 1166 CATGAGATGTATGACAACAG 1185
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 4090065595
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2