BLASTN 2.4.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: rna.fa 176,426 sequences; 587,117,901 total letters Query= CATCATGACCTGGTCTTCTAGGAA (evalue = 10) Length=24 Score E Sequences producing significant alignments: (Bits) Value gi|300863095|ref|NM_058195.3| Homo sapiens cyclin-dependent kin... 48.1 2e-05 gi|1034695254|ref|XR_954132.2| PREDICTED: Homo sapiens uncharac... 30.2 3.7 gi|1034695255|ref|XR_001757938.1| PREDICTED: Homo sapiens uncha... 30.2 3.7 gi|1034604308|ref|XM_011526077.2| PREDICTED: Homo sapiens mitog... 30.2 3.7 > gi|300863095|ref|NM_058195.3| Homo sapiens cyclin-dependent kinase inhibitor 2A (CDKN2A), transcript variant 4, mRNA Length=1164 Score = 48.1 bits (24), Expect = 2e-05 Identities = 24/24 (100%), Gaps = 0/24 (0%) Strand=Plus/Minus Query 1 CATCATGACCTGGTCTTCTAGGAA 24 |||||||||||||||||||||||| Sbjct 362 CATCATGACCTGGTCTTCTAGGAA 339 > gi|1034695254|ref|XR_954132.2| PREDICTED: Homo sapiens uncharacterized LOC105374873 (LOC105374873), transcript variant X1, ncRNA Length=2669 Score = 30.2 bits (15), Expect = 3.7 Identities = 15/15 (100%), Gaps = 0/15 (0%) Strand=Plus/Plus Query 8 ACCTGGTCTTCTAGG 22 ||||||||||||||| Sbjct 2508 ACCTGGTCTTCTAGG 2522 > gi|1034695255|ref|XR_001757938.1| PREDICTED: Homo sapiens uncharacterized LOC105374873 (LOC105374873), transcript variant X2, ncRNA Length=2539 Score = 30.2 bits (15), Expect = 3.7 Identities = 15/15 (100%), Gaps = 0/15 (0%) Strand=Plus/Plus Query 8 ACCTGGTCTTCTAGG 22 ||||||||||||||| Sbjct 2378 ACCTGGTCTTCTAGG 2392 > gi|1034604308|ref|XM_011526077.2| PREDICTED: Homo sapiens mitogen-activated protein kinase 4 (MAPK4), transcript variant X6, mRNA Length=5747 Score = 30.2 bits (15), Expect = 3.7 Identities = 15/15 (100%), Gaps = 0/15 (0%) Strand=Plus/Plus Query 2 ATCATGACCTGGTCT 16 ||||||||||||||| Sbjct 162 ATCATGACCTGGTCT 176 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Effective search space used: 4674360680 Database: rna.fa Posted date: Jan 6, 2017 3:58 PM Number of letters in database: 587,117,901 Number of sequences in database: 176,426 Matrix: blastn matrix 1 -3 Gap Penalties: Existence: 5, Extension: 2