BLASTN 2.4.0+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Database: rna.fa
           176,426 sequences; 587,117,901 total letters



Query= CATCATGACCTGGTCTTCTAGGAA (evalue = 10)

Length=24
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  gi|300863095|ref|NM_058195.3| Homo sapiens cyclin-dependent kin...  48.1    2e-05
  gi|1034695254|ref|XR_954132.2| PREDICTED: Homo sapiens uncharac...  30.2    3.7  
  gi|1034695255|ref|XR_001757938.1| PREDICTED: Homo sapiens uncha...  30.2    3.7  
  gi|1034604308|ref|XM_011526077.2| PREDICTED: Homo sapiens mitog...  30.2    3.7  


> gi|300863095|ref|NM_058195.3| Homo sapiens cyclin-dependent kinase 
inhibitor 2A (CDKN2A), transcript variant 4, mRNA
Length=1164

 Score = 48.1 bits (24),  Expect = 2e-05
 Identities = 24/24 (100%), Gaps = 0/24 (0%)
 Strand=Plus/Minus

Query  1    CATCATGACCTGGTCTTCTAGGAA  24
            ||||||||||||||||||||||||
Sbjct  362  CATCATGACCTGGTCTTCTAGGAA  339


> gi|1034695254|ref|XR_954132.2| PREDICTED: Homo sapiens uncharacterized 
LOC105374873 (LOC105374873), transcript variant X1, 
ncRNA
Length=2669

 Score = 30.2 bits (15),  Expect = 3.7
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Plus

Query  8     ACCTGGTCTTCTAGG  22
             |||||||||||||||
Sbjct  2508  ACCTGGTCTTCTAGG  2522


> gi|1034695255|ref|XR_001757938.1| PREDICTED: Homo sapiens uncharacterized 
LOC105374873 (LOC105374873), transcript variant 
X2, ncRNA
Length=2539

 Score = 30.2 bits (15),  Expect = 3.7
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Plus

Query  8     ACCTGGTCTTCTAGG  22
             |||||||||||||||
Sbjct  2378  ACCTGGTCTTCTAGG  2392


> gi|1034604308|ref|XM_011526077.2| PREDICTED: Homo sapiens mitogen-activated 
protein kinase 4 (MAPK4), transcript variant 
X6, mRNA
Length=5747

 Score = 30.2 bits (15),  Expect = 3.7
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Plus

Query  2    ATCATGACCTGGTCT  16
            |||||||||||||||
Sbjct  162  ATCATGACCTGGTCT  176



Lambda      K        H
    1.37    0.711     1.31 

Gapped
Lambda      K        H
    1.37    0.711     1.31 

Effective search space used: 4674360680


  Database: rna.fa
    Posted date:  Jan 6, 2017  3:58 PM
  Number of letters in database: 587,117,901
  Number of sequences in database:  176,426



Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2