BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= CAGTGTCCAGACTGCGTATTTCTCGAGAAATACGCAGTCTGGACACTGTTTTT (evalue = 10)
Length=53
Score E
Sequences producing significant alignments: (Bits) Value
gi|283837901|ref|NM_017520.3| Homo sapiens M-phase phosphoprote... 44.1 0.001
gi|1034584551|ref|XR_001749584.1| PREDICTED: Homo sapiens M-pha... 44.1 0.001
gi|1034584550|ref|XM_011535124.2| PREDICTED: Homo sapiens M-pha... 44.1 0.001
gi|1034584553|ref|XR_001749585.1| PREDICTED: Homo sapiens M-pha... 44.1 0.001
gi|1034584554|ref|XR_001749586.1| PREDICTED: Homo sapiens M-pha... 44.1 0.001
> gi|283837901|ref|NM_017520.3| Homo sapiens M-phase phosphoprotein
8 (MPHOSPH8), mRNA
Length=4281
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 1 CAGTGTCCAGACTGCGTATTTC 22
||||||||||||||||||||||
Sbjct 2876 CAGTGTCCAGACTGCGTATTTC 2897
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 27 GAAATACGCAGTCTGGACACTG 48
||||||||||||||||||||||
Sbjct 2897 GAAATACGCAGTCTGGACACTG 2876
> gi|1034584551|ref|XR_001749584.1| PREDICTED: Homo sapiens M-phase
phosphoprotein 8 (MPHOSPH8), transcript variant X2, misc_RNA
Length=4613
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 1 CAGTGTCCAGACTGCGTATTTC 22
||||||||||||||||||||||
Sbjct 3239 CAGTGTCCAGACTGCGTATTTC 3260
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 27 GAAATACGCAGTCTGGACACTG 48
||||||||||||||||||||||
Sbjct 3260 GAAATACGCAGTCTGGACACTG 3239
> gi|1034584550|ref|XM_011535124.2| PREDICTED: Homo sapiens M-phase
phosphoprotein 8 (MPHOSPH8), transcript variant X1, mRNA
Length=4376
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 1 CAGTGTCCAGACTGCGTATTTC 22
||||||||||||||||||||||
Sbjct 3002 CAGTGTCCAGACTGCGTATTTC 3023
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 27 GAAATACGCAGTCTGGACACTG 48
||||||||||||||||||||||
Sbjct 3023 GAAATACGCAGTCTGGACACTG 3002
> gi|1034584553|ref|XR_001749585.1| PREDICTED: Homo sapiens M-phase
phosphoprotein 8 (MPHOSPH8), transcript variant X4, misc_RNA
Length=4420
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 1 CAGTGTCCAGACTGCGTATTTC 22
||||||||||||||||||||||
Sbjct 3046 CAGTGTCCAGACTGCGTATTTC 3067
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 27 GAAATACGCAGTCTGGACACTG 48
||||||||||||||||||||||
Sbjct 3067 GAAATACGCAGTCTGGACACTG 3046
> gi|1034584554|ref|XR_001749586.1| PREDICTED: Homo sapiens M-phase
phosphoprotein 8 (MPHOSPH8), transcript variant X5, misc_RNA
Length=4786
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Plus
Query 1 CAGTGTCCAGACTGCGTATTTC 22
||||||||||||||||||||||
Sbjct 3412 CAGTGTCCAGACTGCGTATTTC 3433
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 27 GAAATACGCAGTCTGGACACTG 48
||||||||||||||||||||||
Sbjct 3433 GAAATACGCAGTCTGGACACTG 3412
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 21028271724
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2