BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= CAGCCTTGAGATGACCTAAGC (evalue = 10)
Length=21
Score E
Sequences producing significant alignments: (Bits) Value
gi|442796430|ref|NM_014062.2| Homo sapiens NIN1/PSMD8 binding p... 42.1 6e-04
gi|442796465|ref|NR_074074.1| Homo sapiens NIN1/PSMD8 binding p... 42.1 6e-04
gi|767879895|ref|XR_926130.1| PREDICTED: Homo sapiens uncharact... 32.2 0.59
gi|1034683416|ref|XR_001732838.1| PREDICTED: Homo sapiens long ... 30.2 2.3
gi|1034683418|ref|XR_001732839.1| PREDICTED: Homo sapiens long ... 30.2 2.3
gi|1034683417|ref|XR_914784.2| PREDICTED: Homo sapiens long int... 30.2 2.3
gi|1034694381|ref|XR_001757470.1| PREDICTED: Homo sapiens uncha... 30.2 2.3
gi|1034590055|ref|XR_931770.2| PREDICTED: Homo sapiens centroso... 30.2 2.3
gi|1034590054|ref|XR_001751153.1| PREDICTED: Homo sapiens centr... 30.2 2.3
gi|1034590056|ref|XR_931775.2| PREDICTED: Homo sapiens centroso... 30.2 2.3
gi|1034585398|ref|XR_001749782.1| PREDICTED: Homo sapiens long ... 30.2 2.3
gi|1034585400|ref|XR_001749784.1| PREDICTED: Homo sapiens long ... 30.2 2.3
gi|1034585399|ref|XR_941740.2| PREDICTED: Homo sapiens long int... 30.2 2.3
gi|1034647748|ref|XR_001742859.1| PREDICTED: Homo sapiens uncha... 30.2 2.3
gi|1034684233|ref|XR_001733278.1| PREDICTED: Homo sapiens uncha... 28.2 9.2
gi|1034684229|ref|XR_001733276.1| PREDICTED: Homo sapiens uncha... 28.2 9.2
gi|1034684231|ref|XR_915493.2| PREDICTED: Homo sapiens uncharac... 28.2 9.2
gi|1034684228|ref|XR_432966.3| PREDICTED: Homo sapiens uncharac... 28.2 9.2
gi|1034684232|ref|XR_001733277.1| PREDICTED: Homo sapiens uncha... 28.2 9.2
gi|1034698510|ref|XR_001759469.1| PREDICTED: Homo sapiens uncha... 28.2 9.2
gi|1034695621|ref|XR_954529.2| PREDICTED: Homo sapiens uncharac... 28.2 9.2
gi|1034691382|ref|XR_001749827.1| PREDICTED: Homo sapiens uncha... 28.2 9.2
gi|1034679977|ref|XM_016999897.1| PREDICTED: Homo sapiens notch... 28.2 9.2
gi|1034679973|ref|XM_016999895.1| PREDICTED: Homo sapiens notch... 28.2 9.2
gi|1034679975|ref|XM_016999896.1| PREDICTED: Homo sapiens notch... 28.2 9.2
gi|1034679981|ref|XM_016999899.1| PREDICTED: Homo sapiens notch... 28.2 9.2
gi|1034679971|ref|XM_016999894.1| PREDICTED: Homo sapiens notch... 28.2 9.2
gi|1034679902|ref|XM_011508658.2| PREDICTED: Homo sapiens notch... 28.2 9.2
gi|1034679903|ref|XM_016999866.1| PREDICTED: Homo sapiens notch... 28.2 9.2
gi|1034679905|ref|XM_011508659.2| PREDICTED: Homo sapiens notch... 28.2 9.2
gi|1034679906|ref|XM_011508660.2| PREDICTED: Homo sapiens notch... 28.2 9.2
gi|1034679880|ref|XM_016999862.1| PREDICTED: Homo sapiens notch... 28.2 9.2
gi|1034679879|ref|XM_011549304.2| PREDICTED: Homo sapiens notch... 28.2 9.2
gi|1034679877|ref|XM_016999861.1| PREDICTED: Homo sapiens notch... 28.2 9.2
gi|1034679882|ref|XR_001736351.1| PREDICTED: Homo sapiens notch... 28.2 9.2
gi|1034679875|ref|XM_016999860.1| PREDICTED: Homo sapiens notch... 28.2 9.2
gi|597709751|ref|NM_198456.2| Homo sapiens family with sequence... 28.2 9.2
gi|1034589343|ref|XR_001750943.1| PREDICTED: Homo sapiens uncha... 28.2 9.2
gi|1034589342|ref|XR_001750942.1| PREDICTED: Homo sapiens uncha... 28.2 9.2
gi|315360667|ref|NM_001199839.1| Homo sapiens BCL2 like 2 (BCL2... 28.2 9.2
gi|315360669|ref|NM_004050.4| Homo sapiens BCL2 like 2 (BCL2L2)... 28.2 9.2
gi|1034567550|ref|XM_011539580.2| PREDICTED: Homo sapiens heat ... 28.2 9.2
gi|1034672656|ref|XR_001746701.1| PREDICTED: Homo sapiens uncha... 28.2 9.2
gi|668259717|ref|NR_125420.1| Homo sapiens uncharacterized LOC1... 28.2 9.2
gi|1034653128|ref|XR_926773.2| PREDICTED: Homo sapiens uncharac... 28.2 9.2
gi|1034644703|ref|XM_017009392.1| PREDICTED: Homo sapiens gluta... 28.2 9.2
gi|384381489|ref|NM_001258022.1| Homo sapiens glutamate ionotro... 28.2 9.2
gi|384381487|ref|NM_001258021.1| Homo sapiens glutamate ionotro... 28.2 9.2
gi|384381491|ref|NM_001258023.1| Homo sapiens glutamate ionotro... 28.2 9.2
gi|1034644705|ref|XM_017009393.1| PREDICTED: Homo sapiens gluta... 28.2 9.2
gi|384381483|ref|NM_001258019.1| Homo sapiens glutamate ionotro... 28.2 9.2
gi|167001483|ref|NM_001114183.1| Homo sapiens glutamate ionotro... 28.2 9.2
gi|167001418|ref|NM_000827.3| Homo sapiens glutamate ionotropic... 28.2 9.2
gi|384381485|ref|NM_001258020.1| Homo sapiens glutamate ionotro... 28.2 9.2
gi|1034644702|ref|XM_011537635.2| PREDICTED: Homo sapiens gluta... 28.2 9.2
gi|1034637433|ref|XR_001740736.1| PREDICTED: Homo sapiens uncha... 28.2 9.2
gi|1034633006|ref|XM_017006299.1| PREDICTED: Homo sapiens zinc ... 28.2 9.2
gi|332801010|ref|NM_001137674.2| Homo sapiens zinc finger prote... 28.2 9.2
gi|1034564202|ref|XM_017003050.1| PREDICTED: Homo sapiens notch... 28.2 9.2
gi|1034564198|ref|XM_017003048.1| PREDICTED: Homo sapiens notch... 28.2 9.2
gi|1034564200|ref|XM_017003049.1| PREDICTED: Homo sapiens notch... 28.2 9.2
gi|1034564206|ref|XM_017003052.1| PREDICTED: Homo sapiens notch... 28.2 9.2
gi|1034564196|ref|XM_017003047.1| PREDICTED: Homo sapiens notch... 28.2 9.2
gi|1034564134|ref|XM_011510256.2| PREDICTED: Homo sapiens notch... 28.2 9.2
gi|1034564107|ref|XM_017003014.1| PREDICTED: Homo sapiens notch... 28.2 9.2
gi|1034564106|ref|XM_011542531.2| PREDICTED: Homo sapiens notch... 28.2 9.2
gi|1034564104|ref|XM_017003013.1| PREDICTED: Homo sapiens notch... 28.2 9.2
gi|1034564109|ref|XR_001737692.1| PREDICTED: Homo sapiens notch... 28.2 9.2
gi|1034564102|ref|XM_017003012.1| PREDICTED: Homo sapiens notch... 28.2 9.2
> gi|442796430|ref|NM_014062.2| Homo sapiens NIN1/PSMD8 binding
protein 1 homolog (NOB1), transcript variant 1, mRNA
Length=1775
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 1 CAGCCTTGAGATGACCTAAGC 21
|||||||||||||||||||||
Sbjct 1670 CAGCCTTGAGATGACCTAAGC 1650
> gi|442796465|ref|NR_074074.1| Homo sapiens NIN1/PSMD8 binding
protein 1 homolog (NOB1), transcript variant 2, non-coding
RNA
Length=1644
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Minus
Query 1 CAGCCTTGAGATGACCTAAGC 21
|||||||||||||||||||||
Sbjct 1539 CAGCCTTGAGATGACCTAAGC 1519
> gi|767879895|ref|XR_926130.1| PREDICTED: Homo sapiens uncharacterized
LOC105374797 (LOC105374797), ncRNA
Length=415
Score = 32.2 bits (16), Expect = 0.59
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 1 CAGCCTTGAGATGACC 16
||||||||||||||||
Sbjct 311 CAGCCTTGAGATGACC 326
> gi|1034683416|ref|XR_001732838.1| PREDICTED: Homo sapiens long
intergenic non-protein coding RNA 621 (LINC00621), transcript
variant X1, ncRNA
Length=2472
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 2 AGCCTTGAGATGACC 16
|||||||||||||||
Sbjct 2137 AGCCTTGAGATGACC 2151
> gi|1034683418|ref|XR_001732839.1| PREDICTED: Homo sapiens long
intergenic non-protein coding RNA 621 (LINC00621), transcript
variant X4, ncRNA
Length=1260
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 2 AGCCTTGAGATGACC 16
|||||||||||||||
Sbjct 925 AGCCTTGAGATGACC 939
> gi|1034683417|ref|XR_914784.2| PREDICTED: Homo sapiens long intergenic
non-protein coding RNA 621 (LINC00621), transcript
variant X2, ncRNA
Length=2240
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 2 AGCCTTGAGATGACC 16
|||||||||||||||
Sbjct 2137 AGCCTTGAGATGACC 2151
> gi|1034694381|ref|XR_001757470.1| PREDICTED: Homo sapiens uncharacterized
LOC107986444 (LOC107986444), ncRNA
Length=2576
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 1 CAGCCTTGAGATGAC 15
|||||||||||||||
Sbjct 1874 CAGCCTTGAGATGAC 1860
> gi|1034590055|ref|XR_931770.2| PREDICTED: Homo sapiens centrosomal
protein 152 (CEP152), transcript variant X8, misc_RNA
Length=7658
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 1 CAGCCTTGAGATGAC 15
|||||||||||||||
Sbjct 5431 CAGCCTTGAGATGAC 5445
> gi|1034590054|ref|XR_001751153.1| PREDICTED: Homo sapiens centrosomal
protein 152 (CEP152), transcript variant X7, misc_RNA
Length=7757
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 1 CAGCCTTGAGATGAC 15
|||||||||||||||
Sbjct 5530 CAGCCTTGAGATGAC 5544
> gi|1034590056|ref|XR_931775.2| PREDICTED: Homo sapiens centrosomal
protein 152 (CEP152), transcript variant X9, misc_RNA
Length=7628
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 1 CAGCCTTGAGATGAC 15
|||||||||||||||
Sbjct 5401 CAGCCTTGAGATGAC 5415
> gi|1034585398|ref|XR_001749782.1| PREDICTED: Homo sapiens long
intergenic non-protein coding RNA 621 (LINC00621), transcript
variant X1, ncRNA
Length=2472
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 2 AGCCTTGAGATGACC 16
|||||||||||||||
Sbjct 2137 AGCCTTGAGATGACC 2151
> gi|1034585400|ref|XR_001749784.1| PREDICTED: Homo sapiens long
intergenic non-protein coding RNA 621 (LINC00621), transcript
variant X3, ncRNA
Length=1585
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 2 AGCCTTGAGATGACC 16
|||||||||||||||
Sbjct 1250 AGCCTTGAGATGACC 1264
> gi|1034585399|ref|XR_941740.2| PREDICTED: Homo sapiens long intergenic
non-protein coding RNA 621 (LINC00621), transcript
variant X2, ncRNA
Length=2240
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 2 AGCCTTGAGATGACC 16
|||||||||||||||
Sbjct 2137 AGCCTTGAGATGACC 2151
> gi|1034647748|ref|XR_001742859.1| PREDICTED: Homo sapiens uncharacterized
LOC107986444 (LOC107986444), ncRNA
Length=2584
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 1 CAGCCTTGAGATGAC 15
|||||||||||||||
Sbjct 1874 CAGCCTTGAGATGAC 1860
> gi|1034684233|ref|XR_001733278.1| PREDICTED: Homo sapiens uncharacterized
LOC102724945 (LOC102724945), transcript variant
X2, ncRNA
Length=1071
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 AGCCTTGAGATGAC 15
||||||||||||||
Sbjct 796 AGCCTTGAGATGAC 809
> gi|1034684229|ref|XR_001733276.1| PREDICTED: Homo sapiens uncharacterized
LOC102724945 (LOC102724945), transcript variant
X1, ncRNA
Length=1095
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 AGCCTTGAGATGAC 15
||||||||||||||
Sbjct 820 AGCCTTGAGATGAC 833
> gi|1034684231|ref|XR_915493.2| PREDICTED: Homo sapiens uncharacterized
LOC102724945 (LOC102724945), transcript variant X5,
ncRNA
Length=1405
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 AGCCTTGAGATGAC 15
||||||||||||||
Sbjct 1130 AGCCTTGAGATGAC 1143
> gi|1034684228|ref|XR_432966.3| PREDICTED: Homo sapiens uncharacterized
LOC102724945 (LOC102724945), transcript variant X3,
ncRNA
Length=1400
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 AGCCTTGAGATGAC 15
||||||||||||||
Sbjct 1125 AGCCTTGAGATGAC 1138
> gi|1034684232|ref|XR_001733277.1| PREDICTED: Homo sapiens uncharacterized
LOC102724945 (LOC102724945), transcript variant
X6, ncRNA
Length=1341
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 AGCCTTGAGATGAC 15
||||||||||||||
Sbjct 1066 AGCCTTGAGATGAC 1079
> gi|1034698510|ref|XR_001759469.1| PREDICTED: Homo sapiens uncharacterized
LOC105376072 (LOC105376072), ncRNA
Length=1429
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 AGCCTTGAGATGAC 15
||||||||||||||
Sbjct 278 AGCCTTGAGATGAC 291
> gi|1034695621|ref|XR_954529.2| PREDICTED: Homo sapiens uncharacterized
LOC105375046 (LOC105375046), ncRNA
Length=4300
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 AGCCTTGAGATGAC 15
||||||||||||||
Sbjct 735 AGCCTTGAGATGAC 748
> gi|1034691382|ref|XR_001749827.1| PREDICTED: Homo sapiens uncharacterized
LOC105377127 (LOC105377127), transcript variant
X3, ncRNA
Length=676
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 AGCCTTGAGATGAC 15
||||||||||||||
Sbjct 27 AGCCTTGAGATGAC 14
> gi|1034679977|ref|XM_016999897.1| PREDICTED: Homo sapiens notch
homolog 2 N-terminal-like protein (LOC100996717), transcript
variant X4, mRNA
Length=3217
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 TTGAGATGACCTAA 19
||||||||||||||
Sbjct 2876 TTGAGATGACCTAA 2863
> gi|1034679973|ref|XM_016999895.1| PREDICTED: Homo sapiens notch
homolog 2 N-terminal-like protein (LOC100996717), transcript
variant X2, mRNA
Length=9666
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 TTGAGATGACCTAA 19
||||||||||||||
Sbjct 9325 TTGAGATGACCTAA 9312
> gi|1034679975|ref|XM_016999896.1| PREDICTED: Homo sapiens notch
homolog 2 N-terminal-like protein (LOC100996717), transcript
variant X3, mRNA
Length=2983
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 TTGAGATGACCTAA 19
||||||||||||||
Sbjct 2642 TTGAGATGACCTAA 2629
> gi|1034679981|ref|XM_016999899.1| PREDICTED: Homo sapiens notch
homolog 2 N-terminal-like protein (LOC100996717), transcript
variant X6, mRNA
Length=3117
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 TTGAGATGACCTAA 19
||||||||||||||
Sbjct 2776 TTGAGATGACCTAA 2763
> gi|1034679971|ref|XM_016999894.1| PREDICTED: Homo sapiens notch
homolog 2 N-terminal-like protein (LOC100996717), transcript
variant X1, mRNA
Length=2971
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 TTGAGATGACCTAA 19
||||||||||||||
Sbjct 2630 TTGAGATGACCTAA 2617
> gi|1034679902|ref|XM_011508658.2| PREDICTED: Homo sapiens notch
homolog 2 N-terminal-like protein (LOC100996763), transcript
variant X1, mRNA
Length=4008
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 TTGAGATGACCTAA 19
||||||||||||||
Sbjct 3610 TTGAGATGACCTAA 3597
> gi|1034679903|ref|XM_016999866.1| PREDICTED: Homo sapiens notch
homolog 2 N-terminal-like protein (LOC100996763), transcript
variant X4, mRNA
Length=3917
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 TTGAGATGACCTAA 19
||||||||||||||
Sbjct 3519 TTGAGATGACCTAA 3506
> gi|1034679905|ref|XM_011508659.2| PREDICTED: Homo sapiens notch
homolog 2 N-terminal-like protein (LOC100996763), transcript
variant X5, mRNA
Length=3648
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 TTGAGATGACCTAA 19
||||||||||||||
Sbjct 3250 TTGAGATGACCTAA 3237
> gi|1034679906|ref|XM_011508660.2| PREDICTED: Homo sapiens notch
homolog 2 N-terminal-like protein (LOC100996763), transcript
variant X6, mRNA
Length=2750
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 TTGAGATGACCTAA 19
||||||||||||||
Sbjct 2352 TTGAGATGACCTAA 2339
> gi|1034679880|ref|XM_016999862.1| PREDICTED: Homo sapiens notch
homolog 2 N-terminal-like protein (LOC101929796), transcript
variant X4, mRNA
Length=1711
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 TTGAGATGACCTAA 19
||||||||||||||
Sbjct 1647 TTGAGATGACCTAA 1634
> gi|1034679879|ref|XM_011549304.2| PREDICTED: Homo sapiens notch
homolog 2 N-terminal-like protein (LOC101929796), transcript
variant X3, mRNA
Length=2609
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 TTGAGATGACCTAA 19
||||||||||||||
Sbjct 2545 TTGAGATGACCTAA 2532
> gi|1034679877|ref|XM_016999861.1| PREDICTED: Homo sapiens notch
homolog 2 N-terminal-like protein (LOC101929796), transcript
variant X2, mRNA
Length=2878
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 TTGAGATGACCTAA 19
||||||||||||||
Sbjct 2814 TTGAGATGACCTAA 2801
> gi|1034679882|ref|XR_001736351.1| PREDICTED: Homo sapiens notch
homolog 2 N-terminal-like protein (LOC101929796), transcript
variant X5, misc_RNA
Length=3443
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 TTGAGATGACCTAA 19
||||||||||||||
Sbjct 3379 TTGAGATGACCTAA 3366
> gi|1034679875|ref|XM_016999860.1| PREDICTED: Homo sapiens notch
homolog 2 N-terminal-like protein (LOC101929796), transcript
variant X1, mRNA
Length=2973
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 TTGAGATGACCTAA 19
||||||||||||||
Sbjct 2909 TTGAGATGACCTAA 2896
> gi|597709751|ref|NM_198456.2| Homo sapiens family with sequence
similarity 120C (FAM120C), transcript variant 2, mRNA
Length=1153
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 AGCCTTGAGATGAC 15
||||||||||||||
Sbjct 965 AGCCTTGAGATGAC 978
> gi|1034589343|ref|XR_001750943.1| PREDICTED: Homo sapiens uncharacterized
LOC102724945 (LOC102724945), transcript variant
X2, ncRNA
Length=1071
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 AGCCTTGAGATGAC 15
||||||||||||||
Sbjct 796 AGCCTTGAGATGAC 809
> gi|1034589342|ref|XR_001750942.1| PREDICTED: Homo sapiens uncharacterized
LOC102724945 (LOC102724945), transcript variant
X1, ncRNA
Length=1095
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 AGCCTTGAGATGAC 15
||||||||||||||
Sbjct 820 AGCCTTGAGATGAC 833
> gi|315360667|ref|NM_001199839.1| Homo sapiens BCL2 like 2 (BCL2L2),
transcript variant 2, mRNA
Length=3576
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 3 GCCTTGAGATGACC 16
||||||||||||||
Sbjct 1807 GCCTTGAGATGACC 1820
> gi|315360669|ref|NM_004050.4| Homo sapiens BCL2 like 2 (BCL2L2),
transcript variant 1, mRNA
Length=3621
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 3 GCCTTGAGATGACC 16
||||||||||||||
Sbjct 1852 GCCTTGAGATGACC 1865
> gi|1034567550|ref|XM_011539580.2| PREDICTED: Homo sapiens heat
shock protein family A (Hsp70) member 12A (HSPA12A), transcript
variant X4, mRNA
Length=5878
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 AGCCTTGAGATGAC 15
||||||||||||||
Sbjct 264 AGCCTTGAGATGAC 277
> gi|1034672656|ref|XR_001746701.1| PREDICTED: Homo sapiens uncharacterized
LOC105376072 (LOC105376072), ncRNA
Length=1429
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 AGCCTTGAGATGAC 15
||||||||||||||
Sbjct 278 AGCCTTGAGATGAC 291
> gi|668259717|ref|NR_125420.1| Homo sapiens uncharacterized LOC101927588
(LOC101927588), long non-coding RNA
Length=1175
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 AGCCTTGAGATGAC 15
||||||||||||||
Sbjct 228 AGCCTTGAGATGAC 241
> gi|1034653128|ref|XR_926773.2| PREDICTED: Homo sapiens uncharacterized
LOC105375046 (LOC105375046), ncRNA
Length=4300
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 AGCCTTGAGATGAC 15
||||||||||||||
Sbjct 735 AGCCTTGAGATGAC 748
> gi|1034644703|ref|XM_017009392.1| PREDICTED: Homo sapiens glutamate
ionotropic receptor AMPA type subunit 1 (GRIA1), transcript
variant X2, mRNA
Length=5431
Score = 28.2 bits (14), Expect = 9.2
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 1 CAGCCTTGAGATGACCTA 18
|||| |||||||||||||
Sbjct 250 CAGCTTTGAGATGACCTA 267
> gi|384381489|ref|NM_001258022.1| Homo sapiens glutamate ionotropic
receptor AMPA type subunit 1 (GRIA1), transcript variant
6, mRNA
Length=5439
Score = 28.2 bits (14), Expect = 9.2
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 1 CAGCCTTGAGATGACCTA 18
|||| |||||||||||||
Sbjct 255 CAGCTTTGAGATGACCTA 272
> gi|384381487|ref|NM_001258021.1| Homo sapiens glutamate ionotropic
receptor AMPA type subunit 1 (GRIA1), transcript variant
5, mRNA
Length=5439
Score = 28.2 bits (14), Expect = 9.2
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 1 CAGCCTTGAGATGACCTA 18
|||| |||||||||||||
Sbjct 255 CAGCTTTGAGATGACCTA 272
> gi|384381491|ref|NM_001258023.1| Homo sapiens glutamate ionotropic
receptor AMPA type subunit 1 (GRIA1), transcript variant
7, mRNA
Length=5336
Score = 28.2 bits (14), Expect = 9.2
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 1 CAGCCTTGAGATGACCTA 18
|||| |||||||||||||
Sbjct 152 CAGCTTTGAGATGACCTA 169
> gi|1034644705|ref|XM_017009393.1| PREDICTED: Homo sapiens glutamate
ionotropic receptor AMPA type subunit 1 (GRIA1), transcript
variant X3, mRNA
Length=5370
Score = 28.2 bits (14), Expect = 9.2
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 1 CAGCCTTGAGATGACCTA 18
|||| |||||||||||||
Sbjct 264 CAGCTTTGAGATGACCTA 281
> gi|384381483|ref|NM_001258019.1| Homo sapiens glutamate ionotropic
receptor AMPA type subunit 1 (GRIA1), transcript variant
3, mRNA
Length=5507
Score = 28.2 bits (14), Expect = 9.2
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 1 CAGCCTTGAGATGACCTA 18
|||| |||||||||||||
Sbjct 563 CAGCTTTGAGATGACCTA 580
> gi|167001483|ref|NM_001114183.1| Homo sapiens glutamate ionotropic
receptor AMPA type subunit 1 (GRIA1), transcript variant
2, mRNA
Length=5747
Score = 28.2 bits (14), Expect = 9.2
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 1 CAGCCTTGAGATGACCTA 18
|||| |||||||||||||
Sbjct 563 CAGCTTTGAGATGACCTA 580
> gi|167001418|ref|NM_000827.3| Homo sapiens glutamate ionotropic
receptor AMPA type subunit 1 (GRIA1), transcript variant
1, mRNA
Length=5747
Score = 28.2 bits (14), Expect = 9.2
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 1 CAGCCTTGAGATGACCTA 18
|||| |||||||||||||
Sbjct 563 CAGCTTTGAGATGACCTA 580
> gi|384381485|ref|NM_001258020.1| Homo sapiens glutamate ionotropic
receptor AMPA type subunit 1 (GRIA1), transcript variant
4, mRNA
Length=5804
Score = 28.2 bits (14), Expect = 9.2
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 1 CAGCCTTGAGATGACCTA 18
|||| |||||||||||||
Sbjct 563 CAGCTTTGAGATGACCTA 580
> gi|1034644702|ref|XM_011537635.2| PREDICTED: Homo sapiens glutamate
ionotropic receptor AMPA type subunit 1 (GRIA1), transcript
variant X1, mRNA
Length=5445
Score = 28.2 bits (14), Expect = 9.2
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Plus
Query 1 CAGCCTTGAGATGACCTA 18
|||| |||||||||||||
Sbjct 339 CAGCTTTGAGATGACCTA 356
> gi|1034637433|ref|XR_001740736.1| PREDICTED: Homo sapiens uncharacterized
LOC105377127 (LOC105377127), transcript variant
X3, ncRNA
Length=676
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 2 AGCCTTGAGATGAC 15
||||||||||||||
Sbjct 27 AGCCTTGAGATGAC 14
> gi|1034633006|ref|XM_017006299.1| PREDICTED: Homo sapiens zinc
finger protein 860 (ZNF860), transcript variant X2, mRNA
Length=4696
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 AGCCTTGAGATGAC 15
||||||||||||||
Sbjct 1386 AGCCTTGAGATGAC 1399
> gi|332801010|ref|NM_001137674.2| Homo sapiens zinc finger protein
860 (ZNF860), mRNA
Length=3210
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 2 AGCCTTGAGATGAC 15
||||||||||||||
Sbjct 303 AGCCTTGAGATGAC 316
> gi|1034564202|ref|XM_017003050.1| PREDICTED: Homo sapiens notch
homolog 2 N-terminal-like protein (LOC100996717), transcript
variant X4, mRNA
Length=3217
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 TTGAGATGACCTAA 19
||||||||||||||
Sbjct 2876 TTGAGATGACCTAA 2863
> gi|1034564198|ref|XM_017003048.1| PREDICTED: Homo sapiens notch
homolog 2 N-terminal-like protein (LOC100996717), transcript
variant X2, mRNA
Length=9666
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 TTGAGATGACCTAA 19
||||||||||||||
Sbjct 9325 TTGAGATGACCTAA 9312
> gi|1034564200|ref|XM_017003049.1| PREDICTED: Homo sapiens notch
homolog 2 N-terminal-like protein (LOC100996717), transcript
variant X3, mRNA
Length=2983
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 TTGAGATGACCTAA 19
||||||||||||||
Sbjct 2642 TTGAGATGACCTAA 2629
> gi|1034564206|ref|XM_017003052.1| PREDICTED: Homo sapiens notch
homolog 2 N-terminal-like protein (LOC100996717), transcript
variant X6, mRNA
Length=3117
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 TTGAGATGACCTAA 19
||||||||||||||
Sbjct 2776 TTGAGATGACCTAA 2763
> gi|1034564196|ref|XM_017003047.1| PREDICTED: Homo sapiens notch
homolog 2 N-terminal-like protein (LOC100996717), transcript
variant X1, mRNA
Length=2971
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 TTGAGATGACCTAA 19
||||||||||||||
Sbjct 2630 TTGAGATGACCTAA 2617
> gi|1034564134|ref|XM_011510256.2| PREDICTED: Homo sapiens notch
homolog 2 N-terminal-like protein (LOC100996763), transcript
variant X1, mRNA
Length=4008
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 TTGAGATGACCTAA 19
||||||||||||||
Sbjct 3610 TTGAGATGACCTAA 3597
> gi|1034564107|ref|XM_017003014.1| PREDICTED: Homo sapiens notch
homolog 2 N-terminal-like protein (LOC101929796), transcript
variant X4, mRNA
Length=1711
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 TTGAGATGACCTAA 19
||||||||||||||
Sbjct 1647 TTGAGATGACCTAA 1634
> gi|1034564106|ref|XM_011542531.2| PREDICTED: Homo sapiens notch
homolog 2 N-terminal-like protein (LOC101929796), transcript
variant X3, mRNA
Length=2609
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 TTGAGATGACCTAA 19
||||||||||||||
Sbjct 2545 TTGAGATGACCTAA 2532
> gi|1034564104|ref|XM_017003013.1| PREDICTED: Homo sapiens notch
homolog 2 N-terminal-like protein (LOC101929796), transcript
variant X2, mRNA
Length=2878
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 TTGAGATGACCTAA 19
||||||||||||||
Sbjct 2814 TTGAGATGACCTAA 2801
> gi|1034564109|ref|XR_001737692.1| PREDICTED: Homo sapiens notch
homolog 2 N-terminal-like protein (LOC101929796), transcript
variant X5, misc_RNA
Length=3443
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 TTGAGATGACCTAA 19
||||||||||||||
Sbjct 3379 TTGAGATGACCTAA 3366
> gi|1034564102|ref|XM_017003012.1| PREDICTED: Homo sapiens notch
homolog 2 N-terminal-like protein (LOC101929796), transcript
variant X1, mRNA
Length=2973
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 TTGAGATGACCTAA 19
||||||||||||||
Sbjct 2909 TTGAGATGACCTAA 2896
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 2921475425
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2