BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= AUAUAAUAGUGACUUCACCAUUCCCTT (evalue = 10)
Length=27
Score E
Sequences producing significant alignments: (Bits) Value
gi|1034583597|ref|XM_017020318.1| PREDICTED: Homo sapiens cycli... 50.1 6e-06
gi|1034583593|ref|XM_005266216.4| PREDICTED: Homo sapiens cycli... 50.1 6e-06
gi|1034583594|ref|XM_017020317.1| PREDICTED: Homo sapiens cycli... 50.1 6e-06
gi|767977138|ref|XM_011534864.1| PREDICTED: Homo sapiens cyclin... 50.1 6e-06
gi|971460834|ref|NM_001318368.1| Homo sapiens cyclin-dependent ... 50.1 6e-06
gi|971460838|ref|NM_001260.2| Homo sapiens cyclin-dependent kin... 50.1 6e-06
gi|195963434|ref|NM_001130929.1| Homo sapiens chromosome 7 open... 32.2 1.3
gi|1034682271|ref|XR_001732243.1| PREDICTED: Homo sapiens uncha... 30.2 5.1
gi|1034682273|ref|XR_001732245.1| PREDICTED: Homo sapiens uncha... 30.2 5.1
gi|1034682274|ref|XR_001732246.1| PREDICTED: Homo sapiens uncha... 30.2 5.1
gi|1034583471|ref|XR_001749408.1| PREDICTED: Homo sapiens uncha... 30.2 5.1
gi|1034583473|ref|XR_001749410.1| PREDICTED: Homo sapiens uncha... 30.2 5.1
gi|1034583474|ref|XR_001749411.1| PREDICTED: Homo sapiens uncha... 30.2 5.1
gi|767965617|ref|XM_011519985.1| PREDICTED: Homo sapiens ETS ho... 30.2 5.1
gi|1034573002|ref|XM_017017534.1| PREDICTED: Homo sapiens ETS h... 30.2 5.1
gi|530395219|ref|XM_005252861.1| PREDICTED: Homo sapiens ETS ho... 30.2 5.1
gi|530395211|ref|XM_005252857.1| PREDICTED: Homo sapiens ETS ho... 30.2 5.1
gi|331028759|ref|NM_001206616.1| Homo sapiens ETS homologous fa... 30.2 5.1
gi|530395217|ref|XM_005252860.1| PREDICTED: Homo sapiens ETS ho... 30.2 5.1
gi|530395221|ref|XM_005252862.1| PREDICTED: Homo sapiens ETS ho... 30.2 5.1
gi|767965613|ref|XM_011519983.1| PREDICTED: Homo sapiens ETS ho... 30.2 5.1
gi|767965615|ref|XM_011519984.1| PREDICTED: Homo sapiens ETS ho... 30.2 5.1
gi|331028755|ref|NM_001206615.1| Homo sapiens ETS homologous fa... 30.2 5.1
gi|331028750|ref|NM_012153.5| Homo sapiens ETS homologous facto... 30.2 5.1
gi|324073310|ref|NM_001204315.1| Homo sapiens prolactin recepto... 30.2 5.1
gi|609877687|ref|NM_001204314.2| Homo sapiens prolactin recepto... 30.2 5.1
gi|1034645472|ref|XM_011514069.2| PREDICTED: Homo sapiens prola... 30.2 5.1
gi|1034645471|ref|XM_011514068.2| PREDICTED: Homo sapiens prola... 30.2 5.1
gi|1034645470|ref|XM_006714484.2| PREDICTED: Homo sapiens prola... 30.2 5.1
gi|1034645473|ref|XM_017009645.1| PREDICTED: Homo sapiens prola... 30.2 5.1
gi|609877686|ref|NM_000949.6| Homo sapiens prolactin receptor (... 30.2 5.1
gi|324073329|ref|NM_001204316.1| Homo sapiens prolactin recepto... 30.2 5.1
gi|324073345|ref|NM_001204317.1| Homo sapiens prolactin recepto... 30.2 5.1
gi|324073379|ref|NR_037910.1| Homo sapiens prolactin receptor (... 30.2 5.1
gi|1034645475|ref|XM_017009646.1| PREDICTED: Homo sapiens prola... 30.2 5.1
> gi|1034583597|ref|XM_017020318.1| PREDICTED: Homo sapiens cyclin-dependent
kinase 8 (CDK8), transcript variant X5, mRNA
Length=2177
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%), Gaps = 0/25 (0%)
Strand=Plus/Minus
Query 1 ATATAATAGTGACTTCACCATTCCC 25
|||||||||||||||||||||||||
Sbjct 85 ATATAATAGTGACTTCACCATTCCC 61
> gi|1034583593|ref|XM_005266216.4| PREDICTED: Homo sapiens cyclin-dependent
kinase 8 (CDK8), transcript variant X1, mRNA
Length=2448
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%), Gaps = 0/25 (0%)
Strand=Plus/Minus
Query 1 ATATAATAGTGACTTCACCATTCCC 25
|||||||||||||||||||||||||
Sbjct 295 ATATAATAGTGACTTCACCATTCCC 271
> gi|1034583594|ref|XM_017020317.1| PREDICTED: Homo sapiens cyclin-dependent
kinase 8 (CDK8), transcript variant X2, mRNA
Length=2446
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%), Gaps = 0/25 (0%)
Strand=Plus/Minus
Query 1 ATATAATAGTGACTTCACCATTCCC 25
|||||||||||||||||||||||||
Sbjct 293 ATATAATAGTGACTTCACCATTCCC 269
> gi|767977138|ref|XM_011534864.1| PREDICTED: Homo sapiens cyclin-dependent
kinase 8 (CDK8), transcript variant X3, mRNA
Length=3011
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%), Gaps = 0/25 (0%)
Strand=Plus/Minus
Query 1 ATATAATAGTGACTTCACCATTCCC 25
|||||||||||||||||||||||||
Sbjct 916 ATATAATAGTGACTTCACCATTCCC 892
> gi|971460834|ref|NM_001318368.1| Homo sapiens cyclin-dependent
kinase 8 (CDK8), transcript variant 2, mRNA
Length=3098
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%), Gaps = 0/25 (0%)
Strand=Plus/Minus
Query 1 ATATAATAGTGACTTCACCATTCCC 25
|||||||||||||||||||||||||
Sbjct 937 ATATAATAGTGACTTCACCATTCCC 913
> gi|971460838|ref|NM_001260.2| Homo sapiens cyclin-dependent kinase
8 (CDK8), transcript variant 1, mRNA
Length=3101
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%), Gaps = 0/25 (0%)
Strand=Plus/Minus
Query 1 ATATAATAGTGACTTCACCATTCCC 25
|||||||||||||||||||||||||
Sbjct 937 ATATAATAGTGACTTCACCATTCCC 913
> gi|195963434|ref|NM_001130929.1| Homo sapiens chromosome 7 open
reading frame 73 (C7orf73), mRNA
Length=2515
Score = 32.2 bits (16), Expect = 1.3
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 3 ATAATAGTGACTTCAC 18
||||||||||||||||
Sbjct 620 ATAATAGTGACTTCAC 635
> gi|1034682271|ref|XR_001732243.1| PREDICTED: Homo sapiens uncharacterized
LOC101929974 (LOC101929974), transcript variant
X9, ncRNA
Length=4346
Score = 30.2 bits (15), Expect = 5.1
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 10 TGACTTCACCATTCC 24
|||||||||||||||
Sbjct 3734 TGACTTCACCATTCC 3720
> gi|1034682273|ref|XR_001732245.1| PREDICTED: Homo sapiens uncharacterized
LOC101929974 (LOC101929974), transcript variant
X3, ncRNA
Length=2367
Score = 30.2 bits (15), Expect = 5.1
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 10 TGACTTCACCATTCC 24
|||||||||||||||
Sbjct 1755 TGACTTCACCATTCC 1741
> gi|1034682274|ref|XR_001732246.1| PREDICTED: Homo sapiens uncharacterized
LOC101929974 (LOC101929974), transcript variant
X10, ncRNA
Length=2261
Score = 30.2 bits (15), Expect = 5.1
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 10 TGACTTCACCATTCC 24
|||||||||||||||
Sbjct 1649 TGACTTCACCATTCC 1635
> gi|1034583471|ref|XR_001749408.1| PREDICTED: Homo sapiens uncharacterized
LOC101929974 (LOC101929974), transcript variant
X6, ncRNA
Length=4146
Score = 30.2 bits (15), Expect = 5.1
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 10 TGACTTCACCATTCC 24
|||||||||||||||
Sbjct 3534 TGACTTCACCATTCC 3520
> gi|1034583473|ref|XR_001749410.1| PREDICTED: Homo sapiens uncharacterized
LOC101929974 (LOC101929974), transcript variant
X3, ncRNA
Length=2167
Score = 30.2 bits (15), Expect = 5.1
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 10 TGACTTCACCATTCC 24
|||||||||||||||
Sbjct 1555 TGACTTCACCATTCC 1541
> gi|1034583474|ref|XR_001749411.1| PREDICTED: Homo sapiens uncharacterized
LOC101929974 (LOC101929974), transcript variant
X7, ncRNA
Length=2061
Score = 30.2 bits (15), Expect = 5.1
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 10 TGACTTCACCATTCC 24
|||||||||||||||
Sbjct 1449 TGACTTCACCATTCC 1435
> gi|767965617|ref|XM_011519985.1| PREDICTED: Homo sapiens ETS
homologous factor (EHF), transcript variant X5, mRNA
Length=5342
Score = 30.2 bits (15), Expect = 5.1
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 10 TGACTTCACCATTCC 24
|||||||||||||||
Sbjct 3405 TGACTTCACCATTCC 3419
> gi|1034573002|ref|XM_017017534.1| PREDICTED: Homo sapiens ETS
homologous factor (EHF), transcript variant X7, mRNA
Length=5380
Score = 30.2 bits (15), Expect = 5.1
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 10 TGACTTCACCATTCC 24
|||||||||||||||
Sbjct 3443 TGACTTCACCATTCC 3457
> gi|530395219|ref|XM_005252861.1| PREDICTED: Homo sapiens ETS
homologous factor (EHF), transcript variant X6, mRNA
Length=5383
Score = 30.2 bits (15), Expect = 5.1
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 10 TGACTTCACCATTCC 24
|||||||||||||||
Sbjct 3446 TGACTTCACCATTCC 3460
> gi|530395211|ref|XM_005252857.1| PREDICTED: Homo sapiens ETS
homologous factor (EHF), transcript variant X1, mRNA
Length=5449
Score = 30.2 bits (15), Expect = 5.1
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 10 TGACTTCACCATTCC 24
|||||||||||||||
Sbjct 3512 TGACTTCACCATTCC 3526
> gi|331028759|ref|NM_001206616.1| Homo sapiens ETS homologous
factor (EHF), transcript variant 1, mRNA
Length=5467
Score = 30.2 bits (15), Expect = 5.1
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 10 TGACTTCACCATTCC 24
|||||||||||||||
Sbjct 3515 TGACTTCACCATTCC 3529
> gi|530395217|ref|XM_005252860.1| PREDICTED: Homo sapiens ETS
homologous factor (EHF), transcript variant X4, mRNA
Length=5305
Score = 30.2 bits (15), Expect = 5.1
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 10 TGACTTCACCATTCC 24
|||||||||||||||
Sbjct 3368 TGACTTCACCATTCC 3382
> gi|530395221|ref|XM_005252862.1| PREDICTED: Homo sapiens ETS
homologous factor (EHF), transcript variant X8, mRNA
Length=5252
Score = 30.2 bits (15), Expect = 5.1
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 10 TGACTTCACCATTCC 24
|||||||||||||||
Sbjct 3315 TGACTTCACCATTCC 3329
> gi|767965613|ref|XM_011519983.1| PREDICTED: Homo sapiens ETS
homologous factor (EHF), transcript variant X2, mRNA
Length=5477
Score = 30.2 bits (15), Expect = 5.1
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 10 TGACTTCACCATTCC 24
|||||||||||||||
Sbjct 3540 TGACTTCACCATTCC 3554
> gi|767965615|ref|XM_011519984.1| PREDICTED: Homo sapiens ETS
homologous factor (EHF), transcript variant X3, mRNA
Length=5557
Score = 30.2 bits (15), Expect = 5.1
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 10 TGACTTCACCATTCC 24
|||||||||||||||
Sbjct 3620 TGACTTCACCATTCC 3634
> gi|331028755|ref|NM_001206615.1| Homo sapiens ETS homologous
factor (EHF), transcript variant 3, mRNA
Length=5397
Score = 30.2 bits (15), Expect = 5.1
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 10 TGACTTCACCATTCC 24
|||||||||||||||
Sbjct 3445 TGACTTCACCATTCC 3459
> gi|331028750|ref|NM_012153.5| Homo sapiens ETS homologous factor
(EHF), transcript variant 2, mRNA
Length=5466
Score = 30.2 bits (15), Expect = 5.1
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 10 TGACTTCACCATTCC 24
|||||||||||||||
Sbjct 3514 TGACTTCACCATTCC 3528
> gi|324073310|ref|NM_001204315.1| Homo sapiens prolactin receptor
(PRLR), transcript variant 2, mRNA
Length=1402
Score = 30.2 bits (15), Expect = 5.1
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 7 TAGTGACTTCACCAT 21
|||||||||||||||
Sbjct 786 TAGTGACTTCACCAT 800
> gi|609877687|ref|NM_001204314.2| Homo sapiens prolactin receptor
(PRLR), transcript variant 6, mRNA
Length=11069
Score = 30.2 bits (15), Expect = 5.1
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 7 TAGTGACTTCACCAT 21
|||||||||||||||
Sbjct 483 TAGTGACTTCACCAT 497
> gi|1034645472|ref|XM_011514069.2| PREDICTED: Homo sapiens prolactin
receptor (PRLR), transcript variant X3, mRNA
Length=11460
Score = 30.2 bits (15), Expect = 5.1
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 7 TAGTGACTTCACCAT 21
|||||||||||||||
Sbjct 880 TAGTGACTTCACCAT 894
> gi|1034645471|ref|XM_011514068.2| PREDICTED: Homo sapiens prolactin
receptor (PRLR), transcript variant X2, mRNA
Length=11521
Score = 30.2 bits (15), Expect = 5.1
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 7 TAGTGACTTCACCAT 21
|||||||||||||||
Sbjct 941 TAGTGACTTCACCAT 955
> gi|1034645470|ref|XM_006714484.2| PREDICTED: Homo sapiens prolactin
receptor (PRLR), transcript variant X1, mRNA
Length=11506
Score = 30.2 bits (15), Expect = 5.1
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 7 TAGTGACTTCACCAT 21
|||||||||||||||
Sbjct 926 TAGTGACTTCACCAT 940
> gi|1034645473|ref|XM_017009645.1| PREDICTED: Homo sapiens prolactin
receptor (PRLR), transcript variant X4, mRNA
Length=11454
Score = 30.2 bits (15), Expect = 5.1
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 7 TAGTGACTTCACCAT 21
|||||||||||||||
Sbjct 874 TAGTGACTTCACCAT 888
> gi|609877686|ref|NM_000949.6| Homo sapiens prolactin receptor
(PRLR), transcript variant 1, mRNA
Length=11694
Score = 30.2 bits (15), Expect = 5.1
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 7 TAGTGACTTCACCAT 21
|||||||||||||||
Sbjct 1108 TAGTGACTTCACCAT 1122
> gi|324073329|ref|NM_001204316.1| Homo sapiens prolactin receptor
(PRLR), transcript variant 3, mRNA
Length=1785
Score = 30.2 bits (15), Expect = 5.1
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 7 TAGTGACTTCACCAT 21
|||||||||||||||
Sbjct 786 TAGTGACTTCACCAT 800
> gi|324073345|ref|NM_001204317.1| Homo sapiens prolactin receptor
(PRLR), transcript variant 4, mRNA
Length=1631
Score = 30.2 bits (15), Expect = 5.1
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 7 TAGTGACTTCACCAT 21
|||||||||||||||
Sbjct 786 TAGTGACTTCACCAT 800
> gi|324073379|ref|NR_037910.1| Homo sapiens prolactin receptor
(PRLR), transcript variant 7, non-coding RNA
Length=1498
Score = 30.2 bits (15), Expect = 5.1
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 7 TAGTGACTTCACCAT 21
|||||||||||||||
Sbjct 653 TAGTGACTTCACCAT 667
> gi|1034645475|ref|XM_017009646.1| PREDICTED: Homo sapiens prolactin
receptor (PRLR), transcript variant X5, mRNA
Length=1828
Score = 30.2 bits (15), Expect = 5.1
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 7 TAGTGACTTCACCAT 21
|||||||||||||||
Sbjct 724 TAGTGACTTCACCAT 738
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 6427245935
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2