BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= ATGCAGTGTGGTGCACATTT (evalue = 10)
Length=20
Score E
Sequences producing significant alignments: (Bits) Value
gi|1034656054|ref|XM_017012356.1| PREDICTED: Homo sapiens anill... 40.1 0.002
gi|1034656053|ref|XM_006715747.3| PREDICTED: Homo sapiens anill... 40.1 0.002
gi|1034656051|ref|XM_017012355.1| PREDICTED: Homo sapiens anill... 40.1 0.002
gi|1034656049|ref|XM_017012354.1| PREDICTED: Homo sapiens anill... 40.1 0.002
gi|578813548|ref|XM_006715746.1| PREDICTED: Homo sapiens anilli... 40.1 0.002
gi|697272151|ref|NM_001284302.2| Homo sapiens anillin actin bin... 40.1 0.002
gi|697272139|ref|NM_001284301.2| Homo sapiens anillin actin bin... 40.1 0.002
gi|697272137|ref|NM_018685.4| Homo sapiens anillin actin bindin... 40.1 0.002
gi|1034688804|ref|XR_929141.2| PREDICTED: Homo sapiens uncharac... 30.2 1.9
gi|1034683466|ref|XM_016999520.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|1034585879|ref|XM_017020910.1| PREDICTED: Homo sapiens uncha... 28.2 7.3
gi|219689130|ref|NM_018018.4| Homo sapiens solute carrier famil... 28.2 7.3
gi|219689131|ref|NM_001143824.1| Homo sapiens solute carrier fa... 28.2 7.3
gi|578823914|ref|XM_005268997.2| PREDICTED: Homo sapiens solute... 28.2 7.3
gi|1034661686|ref|XM_017013885.1| PREDICTED: Homo sapiens solut... 28.2 7.3
gi|1034661682|ref|XM_017013883.1| PREDICTED: Homo sapiens solut... 28.2 7.3
gi|767951978|ref|XR_428341.2| PREDICTED: Homo sapiens solute ca... 28.2 7.3
gi|767951977|ref|XM_005251313.2| PREDICTED: Homo sapiens solute... 28.2 7.3
gi|767951979|ref|XR_928814.1| PREDICTED: Homo sapiens solute ca... 28.2 7.3
gi|1034647787|ref|XR_948793.2| PREDICTED: Homo sapiens uncharac... 28.2 7.3
gi|1034558238|ref|XM_011541376.2| PREDICTED: Homo sapiens Tctex... 28.2 7.3
gi|1034558237|ref|XM_011541375.2| PREDICTED: Homo sapiens Tctex... 28.2 7.3
gi|1034558234|ref|XM_006710614.3| PREDICTED: Homo sapiens Tctex... 28.2 7.3
gi|1034558235|ref|XM_017001187.1| PREDICTED: Homo sapiens Tctex... 28.2 7.3
gi|752507717|ref|NM_001013632.3| Homo sapiens Tctex1 domain con... 28.2 7.3
gi|1034559265|ref|XM_011541597.2| PREDICTED: Homo sapiens Wnt f... 28.2 7.3
gi|1034559266|ref|XM_011541598.2| PREDICTED: Homo sapiens Wnt f... 28.2 7.3
gi|156630997|ref|NM_030761.4| Homo sapiens Wnt family member 4 ... 28.2 7.3
> gi|1034656054|ref|XM_017012356.1| PREDICTED: Homo sapiens anillin
actin binding protein (ANLN), transcript variant X5, mRNA
Length=4664
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 ATGCAGTGTGGTGCACATTT 20
||||||||||||||||||||
Sbjct 4133 ATGCAGTGTGGTGCACATTT 4152
> gi|1034656053|ref|XM_006715747.3| PREDICTED: Homo sapiens anillin
actin binding protein (ANLN), transcript variant X4, mRNA
Length=4730
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 ATGCAGTGTGGTGCACATTT 20
||||||||||||||||||||
Sbjct 4199 ATGCAGTGTGGTGCACATTT 4218
> gi|1034656051|ref|XM_017012355.1| PREDICTED: Homo sapiens anillin
actin binding protein (ANLN), transcript variant X3, mRNA
Length=4775
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 ATGCAGTGTGGTGCACATTT 20
||||||||||||||||||||
Sbjct 4244 ATGCAGTGTGGTGCACATTT 4263
> gi|1034656049|ref|XM_017012354.1| PREDICTED: Homo sapiens anillin
actin binding protein (ANLN), transcript variant X2, mRNA
Length=4829
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 ATGCAGTGTGGTGCACATTT 20
||||||||||||||||||||
Sbjct 4298 ATGCAGTGTGGTGCACATTT 4317
> gi|578813548|ref|XM_006715746.1| PREDICTED: Homo sapiens anillin
actin binding protein (ANLN), transcript variant X1, mRNA
Length=4841
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 ATGCAGTGTGGTGCACATTT 20
||||||||||||||||||||
Sbjct 4310 ATGCAGTGTGGTGCACATTT 4329
> gi|697272151|ref|NM_001284302.2| Homo sapiens anillin actin binding
protein (ANLN), transcript variant 3, mRNA
Length=4690
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 ATGCAGTGTGGTGCACATTT 20
||||||||||||||||||||
Sbjct 4145 ATGCAGTGTGGTGCACATTT 4164
> gi|697272139|ref|NM_001284301.2| Homo sapiens anillin actin binding
protein (ANLN), transcript variant 2, mRNA
Length=4693
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 ATGCAGTGTGGTGCACATTT 20
||||||||||||||||||||
Sbjct 4148 ATGCAGTGTGGTGCACATTT 4167
> gi|697272137|ref|NM_018685.4| Homo sapiens anillin actin binding
protein (ANLN), transcript variant 1, mRNA
Length=4804
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 ATGCAGTGTGGTGCACATTT 20
||||||||||||||||||||
Sbjct 4259 ATGCAGTGTGGTGCACATTT 4278
> gi|1034688804|ref|XR_929141.2| PREDICTED: Homo sapiens uncharacterized
LOC105373593 (LOC105373593), transcript variant X3,
ncRNA
Length=3794
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 1 ATGCAGTGTGGTGCA 15
|||||||||||||||
Sbjct 3059 ATGCAGTGTGGTGCA 3045
> gi|1034683466|ref|XM_016999520.1| PREDICTED: Homo sapiens uncharacterized
protein C17orf105 homolog (LOC101929355), mRNA
Length=5446
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 ATGCAGTGTGGTGC 14
||||||||||||||
Sbjct 2972 ATGCAGTGTGGTGC 2985
> gi|1034585879|ref|XM_017020910.1| PREDICTED: Homo sapiens uncharacterized
protein C17orf105 homolog (LOC101929355), mRNA
Length=5446
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 ATGCAGTGTGGTGC 14
||||||||||||||
Sbjct 2972 ATGCAGTGTGGTGC 2985
> gi|219689130|ref|NM_018018.4| Homo sapiens solute carrier family
38 member 4 (SLC38A4), transcript variant 1, mRNA
Length=3999
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 7 TGTGGTGCACATTT 20
||||||||||||||
Sbjct 2251 TGTGGTGCACATTT 2264
> gi|219689131|ref|NM_001143824.1| Homo sapiens solute carrier
family 38 member 4 (SLC38A4), transcript variant 2, mRNA
Length=3807
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 7 TGTGGTGCACATTT 20
||||||||||||||
Sbjct 2059 TGTGGTGCACATTT 2072
> gi|578823914|ref|XM_005268997.2| PREDICTED: Homo sapiens solute
carrier family 38 member 4 (SLC38A4), transcript variant
X1, mRNA
Length=3792
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 7 TGTGGTGCACATTT 20
||||||||||||||
Sbjct 2060 TGTGGTGCACATTT 2073
> gi|1034661686|ref|XM_017013885.1| PREDICTED: Homo sapiens solute
carrier organic anion transporter family member 5A1 (SLCO5A1),
transcript variant X4, mRNA
Length=8720
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 TGTGGTGCACATTT 20
||||||||||||||
Sbjct 5223 TGTGGTGCACATTT 5210
> gi|1034661682|ref|XM_017013883.1| PREDICTED: Homo sapiens solute
carrier organic anion transporter family member 5A1 (SLCO5A1),
transcript variant X2, mRNA
Length=9012
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 TGTGGTGCACATTT 20
||||||||||||||
Sbjct 5515 TGTGGTGCACATTT 5502
> gi|767951978|ref|XR_428341.2| PREDICTED: Homo sapiens solute
carrier organic anion transporter family member 5A1 (SLCO5A1),
transcript variant X5, misc_RNA
Length=8878
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 TGTGGTGCACATTT 20
||||||||||||||
Sbjct 5381 TGTGGTGCACATTT 5368
> gi|767951977|ref|XM_005251313.2| PREDICTED: Homo sapiens solute
carrier organic anion transporter family member 5A1 (SLCO5A1),
transcript variant X1, mRNA
Length=8912
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 TGTGGTGCACATTT 20
||||||||||||||
Sbjct 5415 TGTGGTGCACATTT 5402
> gi|767951979|ref|XR_928814.1| PREDICTED: Homo sapiens solute
carrier organic anion transporter family member 5A1 (SLCO5A1),
transcript variant X6, misc_RNA
Length=8713
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 TGTGGTGCACATTT 20
||||||||||||||
Sbjct 5216 TGTGGTGCACATTT 5203
> gi|1034647787|ref|XR_948793.2| PREDICTED: Homo sapiens uncharacterized
LOC105379179 (LOC105379179), ncRNA
Length=2273
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 5 AGTGTGGTGCACAT 18
||||||||||||||
Sbjct 243 AGTGTGGTGCACAT 230
> gi|1034558238|ref|XM_011541376.2| PREDICTED: Homo sapiens Tctex1
domain containing 4 (TCTEX1D4), transcript variant X4, mRNA
Length=856
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 ATGCAGTGTGGTGC 14
||||||||||||||
Sbjct 613 ATGCAGTGTGGTGC 626
> gi|1034558237|ref|XM_011541375.2| PREDICTED: Homo sapiens Tctex1
domain containing 4 (TCTEX1D4), transcript variant X3, mRNA
Length=1000
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 ATGCAGTGTGGTGC 14
||||||||||||||
Sbjct 757 ATGCAGTGTGGTGC 770
> gi|1034558234|ref|XM_006710614.3| PREDICTED: Homo sapiens Tctex1
domain containing 4 (TCTEX1D4), transcript variant X1, mRNA
Length=950
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 ATGCAGTGTGGTGC 14
||||||||||||||
Sbjct 707 ATGCAGTGTGGTGC 720
> gi|1034558235|ref|XM_017001187.1| PREDICTED: Homo sapiens Tctex1
domain containing 4 (TCTEX1D4), transcript variant X2, mRNA
Length=899
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 ATGCAGTGTGGTGC 14
||||||||||||||
Sbjct 656 ATGCAGTGTGGTGC 669
> gi|752507717|ref|NM_001013632.3| Homo sapiens Tctex1 domain containing
4 (TCTEX1D4), mRNA
Length=1278
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 1 ATGCAGTGTGGTGC 14
||||||||||||||
Sbjct 1022 ATGCAGTGTGGTGC 1035
> gi|1034559265|ref|XM_011541597.2| PREDICTED: Homo sapiens Wnt
family member 4 (WNT4), transcript variant X1, mRNA
Length=5376
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 3 GCAGTGTGGTGCAC 16
||||||||||||||
Sbjct 4086 GCAGTGTGGTGCAC 4099
> gi|1034559266|ref|XM_011541598.2| PREDICTED: Homo sapiens Wnt
family member 4 (WNT4), transcript variant X2, mRNA
Length=3971
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 3 GCAGTGTGGTGCAC 16
||||||||||||||
Sbjct 2681 GCAGTGTGGTGCAC 2694
> gi|156630997|ref|NM_030761.4| Homo sapiens Wnt family member
4 (WNT4), mRNA
Length=3905
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 3 GCAGTGTGGTGCAC 16
||||||||||||||
Sbjct 2612 GCAGTGTGGTGCAC 2625
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 2337180340
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2