BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= ATGAAGGAAAGGTGGAGGGAAG (evalue = 10)
Length=22
Score E
Sequences producing significant alignments: (Bits) Value
gi|973353087|ref|NM_212482.2| Homo sapiens fibronectin 1 (FN1),... 44.1 2e-04
gi|973353088|ref|NM_002026.3| Homo sapiens fibronectin 1 (FN1),... 44.1 2e-04
gi|973353089|ref|NM_212478.2| Homo sapiens fibronectin 1 (FN1),... 44.1 2e-04
gi|973353090|ref|NM_212476.2| Homo sapiens fibronectin 1 (FN1),... 44.1 2e-04
gi|973353091|ref|NM_212474.2| Homo sapiens fibronectin 1 (FN1),... 44.1 2e-04
gi|807066341|ref|NM_001306129.1| Homo sapiens fibronectin 1 (FN... 44.1 2e-04
gi|807066343|ref|NM_001306130.1| Homo sapiens fibronectin 1 (FN... 44.1 2e-04
gi|807066345|ref|NM_001306131.1| Homo sapiens fibronectin 1 (FN... 44.1 2e-04
gi|807066347|ref|NM_001306132.1| Homo sapiens fibronectin 1 (FN... 44.1 2e-04
gi|1034681892|ref|XR_001732034.1| PREDICTED: Homo sapiens uncha... 34.2 0.18
gi|1034577317|ref|XR_001748443.1| PREDICTED: Homo sapiens uncha... 34.2 0.18
gi|527122103|ref|NM_001281445.1| Homo sapiens protein kinase (c... 32.2 0.71
gi|1034622650|ref|XM_017027614.1| PREDICTED: Homo sapiens prote... 32.2 0.71
gi|1034622654|ref|XM_017027616.1| PREDICTED: Homo sapiens prote... 32.2 0.71
gi|1034622652|ref|XM_017027615.1| PREDICTED: Homo sapiens prote... 32.2 0.71
gi|527122099|ref|NM_007066.4| Homo sapiens protein kinase (cAMP... 32.2 0.71
gi|527122100|ref|NM_181804.2| Homo sapiens protein kinase (cAMP... 32.2 0.71
gi|527122101|ref|NM_001281444.1| Homo sapiens protein kinase (c... 32.2 0.71
gi|527122098|ref|NM_181805.2| Homo sapiens protein kinase (cAMP... 32.2 0.71
gi|1034690613|ref|XR_001736305.1| PREDICTED: Homo sapiens uncha... 30.2 2.8
gi|1034681183|ref|XR_001731684.1| PREDICTED: Homo sapiens uncha... 30.2 2.8
gi|1034698959|ref|XR_958914.2| PREDICTED: Homo sapiens uncharac... 30.2 2.8
gi|767890302|ref|XR_958913.1| PREDICTED: Homo sapiens uncharact... 30.2 2.8
gi|768046467|ref|XR_952032.1| PREDICTED: Homo sapiens uncharact... 30.2 2.8
gi|768046466|ref|XR_952031.1| PREDICTED: Homo sapiens uncharact... 30.2 2.8
gi|1034627827|ref|XR_001754976.1| PREDICTED: Homo sapiens uncha... 30.2 2.8
gi|161016764|ref|NM_001110822.1| Homo sapiens tudor domain cont... 30.2 2.8
gi|1034576680|ref|XR_001748135.1| PREDICTED: Homo sapiens uncha... 30.2 2.8
gi|987437954|ref|NR_135124.1| Homo sapiens uncharacterized LOC4... 30.2 2.8
gi|1034673102|ref|XR_930391.2| PREDICTED: Homo sapiens uncharac... 30.2 2.8
gi|767959470|ref|XR_930390.1| PREDICTED: Homo sapiens uncharact... 30.2 2.8
gi|1034664651|ref|XM_017014550.1| PREDICTED: Homo sapiens ATP/G... 30.2 2.8
gi|1034664650|ref|XM_011518421.2| PREDICTED: Homo sapiens ATP/G... 30.2 2.8
gi|1034644924|ref|XM_005268447.4| PREDICTED: Homo sapiens Rho g... 30.2 2.8
gi|83715965|ref|NM_001001669.2| Homo sapiens Rho guanine nucleo... 30.2 2.8
gi|1034644925|ref|XM_017009461.1| PREDICTED: Homo sapiens Rho g... 30.2 2.8
gi|530380553|ref|XM_005268448.1| PREDICTED: Homo sapiens Rho gu... 30.2 2.8
gi|1034644920|ref|XM_006714784.3| PREDICTED: Homo sapiens Rho g... 30.2 2.8
gi|1034644921|ref|XM_017009460.1| PREDICTED: Homo sapiens Rho g... 30.2 2.8
gi|1034644923|ref|XM_011537642.2| PREDICTED: Homo sapiens Rho g... 30.2 2.8
gi|1034644848|ref|XM_017009437.1| PREDICTED: Homo sapiens phosp... 30.2 2.8
gi|1034557380|ref|XM_005245069.2| PREDICTED: Homo sapiens solut... 30.2 2.8
gi|751868081|ref|NM_173854.5| Homo sapiens solute carrier famil... 30.2 2.8
> gi|973353087|ref|NM_212482.2| Homo sapiens fibronectin 1 (FN1),
transcript variant 1, mRNA
Length=8833
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 1 ATGAAGGAAAGGTGGAGGGAAG 22
||||||||||||||||||||||
Sbjct 8738 ATGAAGGAAAGGTGGAGGGAAG 8717
> gi|973353088|ref|NM_002026.3| Homo sapiens fibronectin 1 (FN1),
transcript variant 3, mRNA
Length=8467
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 1 ATGAAGGAAAGGTGGAGGGAAG 22
||||||||||||||||||||||
Sbjct 8372 ATGAAGGAAAGGTGGAGGGAAG 8351
> gi|973353089|ref|NM_212478.2| Homo sapiens fibronectin 1 (FN1),
transcript variant 4, mRNA
Length=8392
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 1 ATGAAGGAAAGGTGGAGGGAAG 22
||||||||||||||||||||||
Sbjct 8297 ATGAAGGAAAGGTGGAGGGAAG 8276
> gi|973353090|ref|NM_212476.2| Homo sapiens fibronectin 1 (FN1),
transcript variant 5, mRNA
Length=8290
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 1 ATGAAGGAAAGGTGGAGGGAAG 22
||||||||||||||||||||||
Sbjct 8195 ATGAAGGAAAGGTGGAGGGAAG 8174
> gi|973353091|ref|NM_212474.2| Homo sapiens fibronectin 1 (FN1),
transcript variant 6, mRNA
Length=7930
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 1 ATGAAGGAAAGGTGGAGGGAAG 22
||||||||||||||||||||||
Sbjct 7835 ATGAAGGAAAGGTGGAGGGAAG 7814
> gi|807066341|ref|NM_001306129.1| Homo sapiens fibronectin 1 (FN1),
transcript variant 8, mRNA
Length=8742
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 1 ATGAAGGAAAGGTGGAGGGAAG 22
||||||||||||||||||||||
Sbjct 8647 ATGAAGGAAAGGTGGAGGGAAG 8626
> gi|807066343|ref|NM_001306130.1| Homo sapiens fibronectin 1 (FN1),
transcript variant 9, mRNA
Length=8205
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 1 ATGAAGGAAAGGTGGAGGGAAG 22
||||||||||||||||||||||
Sbjct 8110 ATGAAGGAAAGGTGGAGGGAAG 8089
> gi|807066345|ref|NM_001306131.1| Homo sapiens fibronectin 1 (FN1),
transcript variant 10, mRNA
Length=8199
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 1 ATGAAGGAAAGGTGGAGGGAAG 22
||||||||||||||||||||||
Sbjct 8104 ATGAAGGAAAGGTGGAGGGAAG 8083
> gi|807066347|ref|NM_001306132.1| Homo sapiens fibronectin 1 (FN1),
transcript variant 11, mRNA
Length=8124
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 1 ATGAAGGAAAGGTGGAGGGAAG 22
||||||||||||||||||||||
Sbjct 8029 ATGAAGGAAAGGTGGAGGGAAG 8008
> gi|1034681892|ref|XR_001732034.1| PREDICTED: Homo sapiens uncharacterized
LOC107984410 (LOC107984410), ncRNA
Length=5753
Score = 34.2 bits (17), Expect = 0.18
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 6 GGAAAGGTGGAGGGAAG 22
|||||||||||||||||
Sbjct 49 GGAAAGGTGGAGGGAAG 33
> gi|1034577317|ref|XR_001748443.1| PREDICTED: Homo sapiens uncharacterized
LOC107984410 (LOC107984410), ncRNA
Length=5752
Score = 34.2 bits (17), Expect = 0.18
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Minus
Query 6 GGAAAGGTGGAGGGAAG 22
|||||||||||||||||
Sbjct 49 GGAAAGGTGGAGGGAAG 33
> gi|527122103|ref|NM_001281445.1| Homo sapiens protein kinase
(cAMP-dependent, catalytic) inhibitor gamma (PKIG), transcript
variant 5, mRNA
Length=1186
Score = 32.2 bits (16), Expect = 0.71
Identities = 19/20 (95%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 3 GAAGGAAAGGTGGAGGGAAG 22
|||||| |||||||||||||
Sbjct 427 GAAGGACAGGTGGAGGGAAG 446
> gi|1034622650|ref|XM_017027614.1| PREDICTED: Homo sapiens protein
kinase (cAMP-dependent, catalytic) inhibitor gamma (PKIG),
transcript variant X1, mRNA
Length=1326
Score = 32.2 bits (16), Expect = 0.71
Identities = 19/20 (95%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 3 GAAGGAAAGGTGGAGGGAAG 22
|||||| |||||||||||||
Sbjct 573 GAAGGACAGGTGGAGGGAAG 592
> gi|1034622654|ref|XM_017027616.1| PREDICTED: Homo sapiens protein
kinase (cAMP-dependent, catalytic) inhibitor gamma (PKIG),
transcript variant X3, mRNA
Length=1132
Score = 32.2 bits (16), Expect = 0.71
Identities = 19/20 (95%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 3 GAAGGAAAGGTGGAGGGAAG 22
|||||| |||||||||||||
Sbjct 379 GAAGGACAGGTGGAGGGAAG 398
> gi|1034622652|ref|XM_017027615.1| PREDICTED: Homo sapiens protein
kinase (cAMP-dependent, catalytic) inhibitor gamma (PKIG),
transcript variant X2, mRNA
Length=1214
Score = 32.2 bits (16), Expect = 0.71
Identities = 19/20 (95%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 3 GAAGGAAAGGTGGAGGGAAG 22
|||||| |||||||||||||
Sbjct 461 GAAGGACAGGTGGAGGGAAG 480
> gi|527122099|ref|NM_007066.4| Homo sapiens protein kinase (cAMP-dependent,
catalytic) inhibitor gamma (PKIG), transcript
variant 2, mRNA
Length=1201
Score = 32.2 bits (16), Expect = 0.71
Identities = 19/20 (95%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 3 GAAGGAAAGGTGGAGGGAAG 22
|||||| |||||||||||||
Sbjct 442 GAAGGACAGGTGGAGGGAAG 461
> gi|527122100|ref|NM_181804.2| Homo sapiens protein kinase (cAMP-dependent,
catalytic) inhibitor gamma (PKIG), transcript
variant 3, mRNA
Length=1348
Score = 32.2 bits (16), Expect = 0.71
Identities = 19/20 (95%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 3 GAAGGAAAGGTGGAGGGAAG 22
|||||| |||||||||||||
Sbjct 589 GAAGGACAGGTGGAGGGAAG 608
> gi|527122101|ref|NM_001281444.1| Homo sapiens protein kinase
(cAMP-dependent, catalytic) inhibitor gamma (PKIG), transcript
variant 4, mRNA
Length=1623
Score = 32.2 bits (16), Expect = 0.71
Identities = 19/20 (95%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 3 GAAGGAAAGGTGGAGGGAAG 22
|||||| |||||||||||||
Sbjct 864 GAAGGACAGGTGGAGGGAAG 883
> gi|527122098|ref|NM_181805.2| Homo sapiens protein kinase (cAMP-dependent,
catalytic) inhibitor gamma (PKIG), transcript
variant 1, mRNA
Length=1453
Score = 32.2 bits (16), Expect = 0.71
Identities = 19/20 (95%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 3 GAAGGAAAGGTGGAGGGAAG 22
|||||| |||||||||||||
Sbjct 694 GAAGGACAGGTGGAGGGAAG 713
> gi|1034690613|ref|XR_001736305.1| PREDICTED: Homo sapiens uncharacterized
LOC105372741 (LOC105372741), ncRNA
Length=4170
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 7 GAAAGGTGGAGGGAA 21
|||||||||||||||
Sbjct 3755 GAAAGGTGGAGGGAA 3741
> gi|1034681183|ref|XR_001731684.1| PREDICTED: Homo sapiens uncharacterized
LOC107984312 (LOC107984312), ncRNA
Length=6174
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 7 GAAAGGTGGAGGGAA 21
|||||||||||||||
Sbjct 2845 GAAAGGTGGAGGGAA 2831
> gi|1034698959|ref|XR_958914.2| PREDICTED: Homo sapiens uncharacterized
LOC105376292 (LOC105376292), transcript variant X2,
ncRNA
Length=718
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 6 GGAAAGGTGGAGGGA 20
|||||||||||||||
Sbjct 189 GGAAAGGTGGAGGGA 203
> gi|767890302|ref|XR_958913.1| PREDICTED: Homo sapiens uncharacterized
LOC105376292 (LOC105376292), transcript variant X1,
ncRNA
Length=730
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 6 GGAAAGGTGGAGGGA 20
|||||||||||||||
Sbjct 201 GGAAAGGTGGAGGGA 215
> gi|768046467|ref|XR_952032.1| PREDICTED: Homo sapiens uncharacterized
LOC105379605 (LOC105379605), transcript variant X2,
ncRNA
Length=1699
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 8 AAAGGTGGAGGGAAG 22
|||||||||||||||
Sbjct 197 AAAGGTGGAGGGAAG 183
> gi|768046466|ref|XR_952031.1| PREDICTED: Homo sapiens uncharacterized
LOC105379605 (LOC105379605), transcript variant X1,
ncRNA
Length=1879
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 8 AAAGGTGGAGGGAAG 22
|||||||||||||||
Sbjct 197 AAAGGTGGAGGGAAG 183
> gi|1034627827|ref|XR_001754976.1| PREDICTED: Homo sapiens uncharacterized
LOC105372741 (LOC105372741), ncRNA
Length=4170
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 7 GAAAGGTGGAGGGAA 21
|||||||||||||||
Sbjct 3755 GAAAGGTGGAGGGAA 3741
> gi|161016764|ref|NM_001110822.1| Homo sapiens tudor domain containing
12 (TDRD12), mRNA
Length=1617
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 8 AAAGGTGGAGGGAAG 22
|||||||||||||||
Sbjct 177 AAAGGTGGAGGGAAG 191
> gi|1034576680|ref|XR_001748135.1| PREDICTED: Homo sapiens uncharacterized
LOC107984312 (LOC107984312), ncRNA
Length=6174
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 7 GAAAGGTGGAGGGAA 21
|||||||||||||||
Sbjct 2845 GAAAGGTGGAGGGAA 2831
> gi|987437954|ref|NR_135124.1| Homo sapiens uncharacterized LOC401554
(LOC401554), long non-coding RNA
Length=3258
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 8 AAAGGTGGAGGGAAG 22
|||||||||||||||
Sbjct 403 AAAGGTGGAGGGAAG 417
> gi|1034673102|ref|XR_930391.2| PREDICTED: Homo sapiens uncharacterized
LOC105376292 (LOC105376292), transcript variant X2,
ncRNA
Length=718
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 6 GGAAAGGTGGAGGGA 20
|||||||||||||||
Sbjct 189 GGAAAGGTGGAGGGA 203
> gi|767959470|ref|XR_930390.1| PREDICTED: Homo sapiens uncharacterized
LOC105376292 (LOC105376292), transcript variant X1,
ncRNA
Length=730
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 6 GGAAAGGTGGAGGGA 20
|||||||||||||||
Sbjct 201 GGAAAGGTGGAGGGA 215
> gi|1034664651|ref|XM_017014550.1| PREDICTED: Homo sapiens ATP/GTP
binding protein 1 (AGTPBP1), transcript variant X14, mRNA
Length=2355
Score = 30.2 bits (15), Expect = 2.8
Identities = 18/19 (95%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 4 AAGGAAAGGTGGAGGGAAG 22
|||||||||| ||||||||
Sbjct 2276 AAGGAAAGGTAGAGGGAAG 2258
> gi|1034664650|ref|XM_011518421.2| PREDICTED: Homo sapiens ATP/GTP
binding protein 1 (AGTPBP1), transcript variant X13, mRNA
Length=2438
Score = 30.2 bits (15), Expect = 2.8
Identities = 18/19 (95%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 4 AAGGAAAGGTGGAGGGAAG 22
|||||||||| ||||||||
Sbjct 2276 AAGGAAAGGTAGAGGGAAG 2258
> gi|1034644924|ref|XM_005268447.4| PREDICTED: Homo sapiens Rho
guanine nucleotide exchange factor 37 (ARHGEF37), transcript
variant X4, mRNA
Length=4840
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 4 AAGGAAAGGTGGAGG 18
|||||||||||||||
Sbjct 2140 AAGGAAAGGTGGAGG 2154
> gi|83715965|ref|NM_001001669.2| Homo sapiens Rho guanine nucleotide
exchange factor 37 (ARHGEF37), mRNA
Length=4865
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 4 AAGGAAAGGTGGAGG 18
|||||||||||||||
Sbjct 2169 AAGGAAAGGTGGAGG 2183
> gi|1034644925|ref|XM_017009461.1| PREDICTED: Homo sapiens Rho
guanine nucleotide exchange factor 37 (ARHGEF37), transcript
variant X6, mRNA
Length=4632
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 4 AAGGAAAGGTGGAGG 18
|||||||||||||||
Sbjct 1932 AAGGAAAGGTGGAGG 1946
> gi|530380553|ref|XM_005268448.1| PREDICTED: Homo sapiens Rho
guanine nucleotide exchange factor 37 (ARHGEF37), transcript
variant X5, mRNA
Length=4743
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 4 AAGGAAAGGTGGAGG 18
|||||||||||||||
Sbjct 2043 AAGGAAAGGTGGAGG 2057
> gi|1034644920|ref|XM_006714784.3| PREDICTED: Homo sapiens Rho
guanine nucleotide exchange factor 37 (ARHGEF37), transcript
variant X1, mRNA
Length=5208
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 4 AAGGAAAGGTGGAGG 18
|||||||||||||||
Sbjct 2508 AAGGAAAGGTGGAGG 2522
> gi|1034644921|ref|XM_017009460.1| PREDICTED: Homo sapiens Rho
guanine nucleotide exchange factor 37 (ARHGEF37), transcript
variant X2, mRNA
Length=4982
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 4 AAGGAAAGGTGGAGG 18
|||||||||||||||
Sbjct 2282 AAGGAAAGGTGGAGG 2296
> gi|1034644923|ref|XM_011537642.2| PREDICTED: Homo sapiens Rho
guanine nucleotide exchange factor 37 (ARHGEF37), transcript
variant X3, mRNA
Length=4891
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 4 AAGGAAAGGTGGAGG 18
|||||||||||||||
Sbjct 2191 AAGGAAAGGTGGAGG 2205
> gi|1034644848|ref|XM_017009437.1| PREDICTED: Homo sapiens phosphatidylinositol
specific phospholipase C X domain containing
3 (PLCXD3), transcript variant X2, mRNA
Length=2657
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 1 ATGAAGGAAAGGTGG 15
|||||||||||||||
Sbjct 453 ATGAAGGAAAGGTGG 467
> gi|1034557380|ref|XM_005245069.2| PREDICTED: Homo sapiens solute
carrier family 41 member 1 (SLC41A1), transcript variant
X1, mRNA
Length=4685
Score = 30.2 bits (15), Expect = 2.8
Identities = 18/19 (95%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 4 AAGGAAAGGTGGAGGGAAG 22
||||| |||||||||||||
Sbjct 3743 AAGGAGAGGTGGAGGGAAG 3725
> gi|751868081|ref|NM_173854.5| Homo sapiens solute carrier family
41 member 1 (SLC41A1), mRNA
Length=5032
Score = 30.2 bits (15), Expect = 2.8
Identities = 18/19 (95%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 4 AAGGAAAGGTGGAGGGAAG 22
||||| |||||||||||||
Sbjct 4067 AAGGAGAGGTGGAGGGAAG 4049
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 3505770510
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2