BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= ATCTGCCCTACAAGCCTAAAC (evalue = 10)
Length=21
Score E
Sequences producing significant alignments: (Bits) Value
gi|442796430|ref|NM_014062.2| Homo sapiens NIN1/PSMD8 binding p... 42.1 6e-04
gi|442796465|ref|NR_074074.1| Homo sapiens NIN1/PSMD8 binding p... 42.1 6e-04
gi|998614196|ref|NM_001320351.1| Homo sapiens transient recepto... 28.2 9.2
gi|67906812|ref|NM_003307.3| Homo sapiens transient receptor po... 28.2 9.2
gi|998613935|ref|NM_001320350.1| Homo sapiens transient recepto... 28.2 9.2
gi|333609249|ref|NR_038257.1| Homo sapiens transient receptor p... 28.2 9.2
gi|1034627564|ref|XM_011529736.2| PREDICTED: Homo sapiens trans... 28.2 9.2
gi|1034627568|ref|XM_017028457.1| PREDICTED: Homo sapiens trans... 28.2 9.2
gi|1034627572|ref|XR_001754902.1| PREDICTED: Homo sapiens trans... 28.2 9.2
gi|1034627571|ref|XR_001754901.1| PREDICTED: Homo sapiens trans... 28.2 9.2
gi|1034627570|ref|XR_001754900.1| PREDICTED: Homo sapiens trans... 28.2 9.2
gi|1034627567|ref|XM_005261171.3| PREDICTED: Homo sapiens trans... 28.2 9.2
gi|1034627565|ref|XM_017028456.1| PREDICTED: Homo sapiens trans... 28.2 9.2
gi|1034599086|ref|XM_006721813.3| PREDICTED: Homo sapiens N-ace... 28.2 9.2
gi|1034599102|ref|XM_017024441.1| PREDICTED: Homo sapiens N-ace... 28.2 9.2
gi|1034599083|ref|XM_017024437.1| PREDICTED: Homo sapiens N-ace... 28.2 9.2
gi|1034599098|ref|XR_001752476.1| PREDICTED: Homo sapiens N-ace... 28.2 9.2
gi|1034599085|ref|XM_005257212.4| PREDICTED: Homo sapiens N-ace... 28.2 9.2
gi|1034599094|ref|XR_001752473.1| PREDICTED: Homo sapiens N-ace... 28.2 9.2
gi|1034599087|ref|XR_001752471.1| PREDICTED: Homo sapiens N-ace... 28.2 9.2
gi|1034599093|ref|XR_001752472.1| PREDICTED: Homo sapiens N-ace... 28.2 9.2
gi|1034599095|ref|XR_001752474.1| PREDICTED: Homo sapiens N-ace... 28.2 9.2
gi|1034599097|ref|XR_934438.2| PREDICTED: Homo sapiens N-acetyl... 28.2 9.2
gi|1034599099|ref|XR_001752477.1| PREDICTED: Homo sapiens N-ace... 28.2 9.2
gi|1034599091|ref|XM_017024439.1| PREDICTED: Homo sapiens N-ace... 28.2 9.2
gi|758818560|ref|NM_001305082.1| Homo sapiens N-acetyltransfera... 28.2 9.2
gi|758818570|ref|NM_001305087.1| Homo sapiens N-acetyltransfera... 28.2 9.2
gi|758818595|ref|NR_130953.1| Homo sapiens N-acetyltransferase ... 28.2 9.2
gi|758818549|ref|NM_015654.4| Homo sapiens N-acetyltransferase ... 28.2 9.2
gi|758818556|ref|NM_001305080.1| Homo sapiens N-acetyltransfera... 28.2 9.2
gi|758818554|ref|NM_001305079.1| Homo sapiens N-acetyltransfera... 28.2 9.2
gi|758818564|ref|NM_001305084.1| Homo sapiens N-acetyltransfera... 28.2 9.2
gi|758818596|ref|NR_130954.1| Homo sapiens N-acetyltransferase ... 28.2 9.2
gi|758818550|ref|NM_001305077.1| Homo sapiens N-acetyltransfera... 28.2 9.2
gi|758818558|ref|NM_001305081.1| Homo sapiens N-acetyltransfera... 28.2 9.2
gi|758818562|ref|NM_001305083.1| Homo sapiens N-acetyltransfera... 28.2 9.2
gi|758818568|ref|NM_001305086.1| Homo sapiens N-acetyltransfera... 28.2 9.2
gi|758818566|ref|NM_001305085.1| Homo sapiens N-acetyltransfera... 28.2 9.2
gi|758818572|ref|NM_001305088.1| Homo sapiens N-acetyltransfera... 28.2 9.2
gi|758818552|ref|NM_001305078.1| Homo sapiens N-acetyltransfera... 28.2 9.2
> gi|442796430|ref|NM_014062.2| Homo sapiens NIN1/PSMD8 binding
protein 1 homolog (NOB1), transcript variant 1, mRNA
Length=1775
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 ATCTGCCCTACAAGCCTAAAC 21
|||||||||||||||||||||
Sbjct 444 ATCTGCCCTACAAGCCTAAAC 464
> gi|442796465|ref|NR_074074.1| Homo sapiens NIN1/PSMD8 binding
protein 1 homolog (NOB1), transcript variant 2, non-coding
RNA
Length=1644
Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%), Gaps = 0/21 (0%)
Strand=Plus/Plus
Query 1 ATCTGCCCTACAAGCCTAAAC 21
|||||||||||||||||||||
Sbjct 313 ATCTGCCCTACAAGCCTAAAC 333
> gi|998614196|ref|NM_001320351.1| Homo sapiens transient receptor
potential cation channel subfamily M member 2 (TRPM2), transcript
variant 4, mRNA
Length=5774
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 6 CCCTACAAGCCTAA 19
||||||||||||||
Sbjct 3107 CCCTACAAGCCTAA 3120
> gi|67906812|ref|NM_003307.3| Homo sapiens transient receptor
potential cation channel subfamily M member 2 (TRPM2), transcript
variant 1, mRNA
Length=5876
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 6 CCCTACAAGCCTAA 19
||||||||||||||
Sbjct 3107 CCCTACAAGCCTAA 3120
> gi|998613935|ref|NM_001320350.1| Homo sapiens transient receptor
potential cation channel subfamily M member 2 (TRPM2), transcript
variant 3, mRNA
Length=6026
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 6 CCCTACAAGCCTAA 19
||||||||||||||
Sbjct 3107 CCCTACAAGCCTAA 3120
> gi|333609249|ref|NR_038257.1| Homo sapiens transient receptor
potential cation channel subfamily M member 2 (TRPM2), transcript
variant 2, non-coding RNA
Length=5879
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 6 CCCTACAAGCCTAA 19
||||||||||||||
Sbjct 3110 CCCTACAAGCCTAA 3123
> gi|1034627564|ref|XM_011529736.2| PREDICTED: Homo sapiens transient
receptor potential cation channel subfamily M member
2 (TRPM2), transcript variant X1, mRNA
Length=6096
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 6 CCCTACAAGCCTAA 19
||||||||||||||
Sbjct 3511 CCCTACAAGCCTAA 3524
> gi|1034627568|ref|XM_017028457.1| PREDICTED: Homo sapiens transient
receptor potential cation channel subfamily M member
2 (TRPM2), transcript variant X4, mRNA
Length=5995
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 6 CCCTACAAGCCTAA 19
||||||||||||||
Sbjct 3512 CCCTACAAGCCTAA 3525
> gi|1034627572|ref|XR_001754902.1| PREDICTED: Homo sapiens transient
receptor potential cation channel subfamily M member
2 (TRPM2), transcript variant X7, misc_RNA
Length=4666
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 6 CCCTACAAGCCTAA 19
||||||||||||||
Sbjct 3513 CCCTACAAGCCTAA 3526
> gi|1034627571|ref|XR_001754901.1| PREDICTED: Homo sapiens transient
receptor potential cation channel subfamily M member
2 (TRPM2), transcript variant X6, misc_RNA
Length=6134
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 6 CCCTACAAGCCTAA 19
||||||||||||||
Sbjct 3515 CCCTACAAGCCTAA 3528
> gi|1034627570|ref|XR_001754900.1| PREDICTED: Homo sapiens transient
receptor potential cation channel subfamily M member
2 (TRPM2), transcript variant X5, misc_RNA
Length=6236
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 6 CCCTACAAGCCTAA 19
||||||||||||||
Sbjct 3515 CCCTACAAGCCTAA 3528
> gi|1034627567|ref|XM_005261171.3| PREDICTED: Homo sapiens transient
receptor potential cation channel subfamily M member
2 (TRPM2), transcript variant X3, mRNA
Length=5763
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 6 CCCTACAAGCCTAA 19
||||||||||||||
Sbjct 3268 CCCTACAAGCCTAA 3281
> gi|1034627565|ref|XM_017028456.1| PREDICTED: Homo sapiens transient
receptor potential cation channel subfamily M member
2 (TRPM2), transcript variant X2, mRNA
Length=5856
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Plus
Query 6 CCCTACAAGCCTAA 19
||||||||||||||
Sbjct 3271 CCCTACAAGCCTAA 3284
> gi|1034599086|ref|XM_006721813.3| PREDICTED: Homo sapiens N-acetyltransferase
9 (putative) (NAT9), transcript variant X3,
mRNA
Length=2256
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 TGCCCTACAAGCCT 17
||||||||||||||
Sbjct 2107 TGCCCTACAAGCCT 2094
> gi|1034599102|ref|XM_017024441.1| PREDICTED: Homo sapiens N-acetyltransferase
9 (putative) (NAT9), transcript variant X16,
mRNA
Length=2149
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 TGCCCTACAAGCCT 17
||||||||||||||
Sbjct 2000 TGCCCTACAAGCCT 1987
> gi|1034599083|ref|XM_017024437.1| PREDICTED: Homo sapiens N-acetyltransferase
9 (putative) (NAT9), transcript variant X1,
mRNA
Length=1895
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 TGCCCTACAAGCCT 17
||||||||||||||
Sbjct 1746 TGCCCTACAAGCCT 1733
> gi|1034599098|ref|XR_001752476.1| PREDICTED: Homo sapiens N-acetyltransferase
9 (putative) (NAT9), transcript variant X13,
misc_RNA
Length=2165
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 TGCCCTACAAGCCT 17
||||||||||||||
Sbjct 2016 TGCCCTACAAGCCT 2003
> gi|1034599085|ref|XM_005257212.4| PREDICTED: Homo sapiens N-acetyltransferase
9 (putative) (NAT9), transcript variant X2,
mRNA
Length=1808
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 TGCCCTACAAGCCT 17
||||||||||||||
Sbjct 1659 TGCCCTACAAGCCT 1646
> gi|1034599094|ref|XR_001752473.1| PREDICTED: Homo sapiens N-acetyltransferase
9 (putative) (NAT9), transcript variant X9,
misc_RNA
Length=2019
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 TGCCCTACAAGCCT 17
||||||||||||||
Sbjct 1870 TGCCCTACAAGCCT 1857
> gi|1034599087|ref|XR_001752471.1| PREDICTED: Homo sapiens N-acetyltransferase
9 (putative) (NAT9), transcript variant X4,
misc_RNA
Length=2373
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 TGCCCTACAAGCCT 17
||||||||||||||
Sbjct 2224 TGCCCTACAAGCCT 2211
> gi|1034599093|ref|XR_001752472.1| PREDICTED: Homo sapiens N-acetyltransferase
9 (putative) (NAT9), transcript variant X8,
misc_RNA
Length=2029
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 TGCCCTACAAGCCT 17
||||||||||||||
Sbjct 1880 TGCCCTACAAGCCT 1867
> gi|1034599095|ref|XR_001752474.1| PREDICTED: Homo sapiens N-acetyltransferase
9 (putative) (NAT9), transcript variant X10,
misc_RNA
Length=1910
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 TGCCCTACAAGCCT 17
||||||||||||||
Sbjct 1761 TGCCCTACAAGCCT 1748
> gi|1034599097|ref|XR_934438.2| PREDICTED: Homo sapiens N-acetyltransferase
9 (putative) (NAT9), transcript variant X12, misc_RNA
Length=2192
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 TGCCCTACAAGCCT 17
||||||||||||||
Sbjct 2043 TGCCCTACAAGCCT 2030
> gi|1034599099|ref|XR_001752477.1| PREDICTED: Homo sapiens N-acetyltransferase
9 (putative) (NAT9), transcript variant X14,
misc_RNA
Length=1910
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 TGCCCTACAAGCCT 17
||||||||||||||
Sbjct 1761 TGCCCTACAAGCCT 1748
> gi|1034599091|ref|XM_017024439.1| PREDICTED: Homo sapiens N-acetyltransferase
9 (putative) (NAT9), transcript variant X7,
mRNA
Length=1859
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 TGCCCTACAAGCCT 17
||||||||||||||
Sbjct 1710 TGCCCTACAAGCCT 1697
> gi|758818560|ref|NM_001305082.1| Homo sapiens N-acetyltransferase
9 (putative) (NAT9), transcript variant 7, mRNA
Length=2132
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 TGCCCTACAAGCCT 17
||||||||||||||
Sbjct 1965 TGCCCTACAAGCCT 1952
> gi|758818570|ref|NM_001305087.1| Homo sapiens N-acetyltransferase
9 (putative) (NAT9), transcript variant 12, mRNA
Length=1888
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 TGCCCTACAAGCCT 17
||||||||||||||
Sbjct 1721 TGCCCTACAAGCCT 1708
> gi|758818595|ref|NR_130953.1| Homo sapiens N-acetyltransferase
9 (putative) (NAT9), transcript variant 14, non-coding RNA
Length=1991
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 TGCCCTACAAGCCT 17
||||||||||||||
Sbjct 1824 TGCCCTACAAGCCT 1811
> gi|758818549|ref|NM_015654.4| Homo sapiens N-acetyltransferase
9 (putative) (NAT9), transcript variant 1, mRNA
Length=1987
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 TGCCCTACAAGCCT 17
||||||||||||||
Sbjct 1820 TGCCCTACAAGCCT 1807
> gi|758818556|ref|NM_001305080.1| Homo sapiens N-acetyltransferase
9 (putative) (NAT9), transcript variant 5, mRNA
Length=1972
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 TGCCCTACAAGCCT 17
||||||||||||||
Sbjct 1805 TGCCCTACAAGCCT 1792
> gi|758818554|ref|NM_001305079.1| Homo sapiens N-acetyltransferase
9 (putative) (NAT9), transcript variant 4, mRNA
Length=1910
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 TGCCCTACAAGCCT 17
||||||||||||||
Sbjct 1743 TGCCCTACAAGCCT 1730
> gi|758818564|ref|NM_001305084.1| Homo sapiens N-acetyltransferase
9 (putative) (NAT9), transcript variant 9, mRNA
Length=1868
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 TGCCCTACAAGCCT 17
||||||||||||||
Sbjct 1701 TGCCCTACAAGCCT 1688
> gi|758818596|ref|NR_130954.1| Homo sapiens N-acetyltransferase
9 (putative) (NAT9), transcript variant 15, non-coding RNA
Length=1869
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 TGCCCTACAAGCCT 17
||||||||||||||
Sbjct 1702 TGCCCTACAAGCCT 1689
> gi|758818550|ref|NM_001305077.1| Homo sapiens N-acetyltransferase
9 (putative) (NAT9), transcript variant 2, mRNA
Length=1984
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 TGCCCTACAAGCCT 17
||||||||||||||
Sbjct 1817 TGCCCTACAAGCCT 1804
> gi|758818558|ref|NM_001305081.1| Homo sapiens N-acetyltransferase
9 (putative) (NAT9), transcript variant 6, mRNA
Length=1981
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 TGCCCTACAAGCCT 17
||||||||||||||
Sbjct 1814 TGCCCTACAAGCCT 1801
> gi|758818562|ref|NM_001305083.1| Homo sapiens N-acetyltransferase
9 (putative) (NAT9), transcript variant 8, mRNA
Length=1969
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 TGCCCTACAAGCCT 17
||||||||||||||
Sbjct 1802 TGCCCTACAAGCCT 1789
> gi|758818568|ref|NM_001305086.1| Homo sapiens N-acetyltransferase
9 (putative) (NAT9), transcript variant 11, mRNA
Length=1889
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 TGCCCTACAAGCCT 17
||||||||||||||
Sbjct 1722 TGCCCTACAAGCCT 1709
> gi|758818566|ref|NM_001305085.1| Homo sapiens N-acetyltransferase
9 (putative) (NAT9), transcript variant 10, mRNA
Length=1865
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 TGCCCTACAAGCCT 17
||||||||||||||
Sbjct 1698 TGCCCTACAAGCCT 1685
> gi|758818572|ref|NM_001305088.1| Homo sapiens N-acetyltransferase
9 (putative) (NAT9), transcript variant 13, mRNA
Length=1821
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 TGCCCTACAAGCCT 17
||||||||||||||
Sbjct 1654 TGCCCTACAAGCCT 1641
> gi|758818552|ref|NM_001305078.1| Homo sapiens N-acetyltransferase
9 (putative) (NAT9), transcript variant 3, mRNA
Length=1983
Score = 28.2 bits (14), Expect = 9.2
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 4 TGCCCTACAAGCCT 17
||||||||||||||
Sbjct 1816 TGCCCTACAAGCCT 1803
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 2921475425
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2