BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= AGTTATTGCTCGGCTCTGTG (evalue = 10)
Length=20
Score E
Sequences producing significant alignments: (Bits) Value
gi|283837901|ref|NM_017520.3| Homo sapiens M-phase phosphoprote... 40.1 0.002
gi|1034584552|ref|XR_941609.2| PREDICTED: Homo sapiens M-phase ... 40.1 0.002
gi|1034584551|ref|XR_001749584.1| PREDICTED: Homo sapiens M-pha... 40.1 0.002
gi|1034584550|ref|XM_011535124.2| PREDICTED: Homo sapiens M-pha... 40.1 0.002
gi|1034584553|ref|XR_001749585.1| PREDICTED: Homo sapiens M-pha... 40.1 0.002
gi|1034584554|ref|XR_001749586.1| PREDICTED: Homo sapiens M-pha... 40.1 0.002
gi|52485940|ref|NM_002207.2| Homo sapiens integrin subunit alph... 32.2 0.47
gi|1034583562|ref|XM_017020307.1| PREDICTED: Homo sapiens FRY m... 28.2 7.3
gi|1034583560|ref|XM_017020306.1| PREDICTED: Homo sapiens FRY m... 28.2 7.3
gi|1034583558|ref|XM_017020305.1| PREDICTED: Homo sapiens FRY m... 28.2 7.3
gi|1034583555|ref|XM_006719749.3| PREDICTED: Homo sapiens FRY m... 28.2 7.3
gi|1034583556|ref|XM_017020304.1| PREDICTED: Homo sapiens FRY m... 28.2 7.3
gi|1034583553|ref|XM_017020303.1| PREDICTED: Homo sapiens FRY m... 28.2 7.3
gi|301172749|ref|NM_002458.2| Homo sapiens mucin 5B, oligomeric... 28.2 7.3
gi|1034568039|ref|XM_011539752.2| PREDICTED: Homo sapiens lipas... 28.2 7.3
gi|1034568038|ref|XM_011539751.2| PREDICTED: Homo sapiens lipas... 28.2 7.3
gi|1034568037|ref|XM_011539748.2| PREDICTED: Homo sapiens lipas... 28.2 7.3
> gi|283837901|ref|NM_017520.3| Homo sapiens M-phase phosphoprotein
8 (MPHOSPH8), mRNA
Length=4281
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 AGTTATTGCTCGGCTCTGTG 20
||||||||||||||||||||
Sbjct 2480 AGTTATTGCTCGGCTCTGTG 2499
> gi|1034584552|ref|XR_941609.2| PREDICTED: Homo sapiens M-phase
phosphoprotein 8 (MPHOSPH8), transcript variant X3, misc_RNA
Length=2742
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 AGTTATTGCTCGGCTCTGTG 20
||||||||||||||||||||
Sbjct 2481 AGTTATTGCTCGGCTCTGTG 2500
> gi|1034584551|ref|XR_001749584.1| PREDICTED: Homo sapiens M-phase
phosphoprotein 8 (MPHOSPH8), transcript variant X2, misc_RNA
Length=4613
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 AGTTATTGCTCGGCTCTGTG 20
||||||||||||||||||||
Sbjct 2481 AGTTATTGCTCGGCTCTGTG 2500
> gi|1034584550|ref|XM_011535124.2| PREDICTED: Homo sapiens M-phase
phosphoprotein 8 (MPHOSPH8), transcript variant X1, mRNA
Length=4376
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 AGTTATTGCTCGGCTCTGTG 20
||||||||||||||||||||
Sbjct 2481 AGTTATTGCTCGGCTCTGTG 2500
> gi|1034584553|ref|XR_001749585.1| PREDICTED: Homo sapiens M-phase
phosphoprotein 8 (MPHOSPH8), transcript variant X4, misc_RNA
Length=4420
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 AGTTATTGCTCGGCTCTGTG 20
||||||||||||||||||||
Sbjct 2650 AGTTATTGCTCGGCTCTGTG 2669
> gi|1034584554|ref|XR_001749586.1| PREDICTED: Homo sapiens M-phase
phosphoprotein 8 (MPHOSPH8), transcript variant X5, misc_RNA
Length=4786
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Plus
Query 1 AGTTATTGCTCGGCTCTGTG 20
||||||||||||||||||||
Sbjct 2650 AGTTATTGCTCGGCTCTGTG 2669
> gi|52485940|ref|NM_002207.2| Homo sapiens integrin subunit alpha
9 (ITGA9), mRNA
Length=3962
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 4 TATTGCTCGGCTCTGT 19
||||||||||||||||
Sbjct 3413 TATTGCTCGGCTCTGT 3398
> gi|1034583562|ref|XM_017020307.1| PREDICTED: Homo sapiens FRY
microtubule binding protein (FRY), transcript variant X6, mRNA
Length=9299
Score = 28.2 bits (14), Expect = 7.3
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 AGTTATTGCTCGGCTCTG 18
|||||||||| |||||||
Sbjct 7898 AGTTATTGCTGGGCTCTG 7881
> gi|1034583560|ref|XM_017020306.1| PREDICTED: Homo sapiens FRY
microtubule binding protein (FRY), transcript variant X5, mRNA
Length=9946
Score = 28.2 bits (14), Expect = 7.3
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 AGTTATTGCTCGGCTCTG 18
|||||||||| |||||||
Sbjct 8545 AGTTATTGCTGGGCTCTG 8528
> gi|1034583558|ref|XM_017020305.1| PREDICTED: Homo sapiens FRY
microtubule binding protein (FRY), transcript variant X4, mRNA
Length=14804
Score = 28.2 bits (14), Expect = 7.3
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 AGTTATTGCTCGGCTCTG 18
|||||||||| |||||||
Sbjct 13403 AGTTATTGCTGGGCTCTG 13386
> gi|1034583555|ref|XM_006719749.3| PREDICTED: Homo sapiens FRY
microtubule binding protein (FRY), transcript variant X2, mRNA
Length=14308
Score = 28.2 bits (14), Expect = 7.3
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 AGTTATTGCTCGGCTCTG 18
|||||||||| |||||||
Sbjct 12907 AGTTATTGCTGGGCTCTG 12890
> gi|1034583556|ref|XM_017020304.1| PREDICTED: Homo sapiens FRY
microtubule binding protein (FRY), transcript variant X3, mRNA
Length=13209
Score = 28.2 bits (14), Expect = 7.3
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 AGTTATTGCTCGGCTCTG 18
|||||||||| |||||||
Sbjct 11808 AGTTATTGCTGGGCTCTG 11791
> gi|1034583553|ref|XM_017020303.1| PREDICTED: Homo sapiens FRY
microtubule binding protein (FRY), transcript variant X1, mRNA
Length=14785
Score = 28.2 bits (14), Expect = 7.3
Identities = 17/18 (94%), Gaps = 0/18 (0%)
Strand=Plus/Minus
Query 1 AGTTATTGCTCGGCTCTG 18
|||||||||| |||||||
Sbjct 13384 AGTTATTGCTGGGCTCTG 13367
> gi|301172749|ref|NM_002458.2| Homo sapiens mucin 5B, oligomeric
mucus/gel-forming (MUC5B), mRNA
Length=17916
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 TGCTCGGCTCTGTG 20
||||||||||||||
Sbjct 7467 TGCTCGGCTCTGTG 7454
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 TGCTCGGCTCTGTG 20
||||||||||||||
Sbjct 11238 TGCTCGGCTCTGTG 11225
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 TGCTCGGCTCTGTG 20
||||||||||||||
Sbjct 13422 TGCTCGGCTCTGTG 13409
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 7 TGCTCGGCTCTGTG 20
||||||||||||||
Sbjct 14616 TGCTCGGCTCTGTG 14603
> gi|1034568039|ref|XM_011539752.2| PREDICTED: Homo sapiens lipase
family member M (LIPM), transcript variant X3, mRNA
Length=1156
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 TTGCTCGGCTCTGT 19
||||||||||||||
Sbjct 396 TTGCTCGGCTCTGT 383
> gi|1034568038|ref|XM_011539751.2| PREDICTED: Homo sapiens lipase
family member M (LIPM), transcript variant X2, mRNA
Length=5156
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 TTGCTCGGCTCTGT 19
||||||||||||||
Sbjct 4396 TTGCTCGGCTCTGT 4383
> gi|1034568037|ref|XM_011539748.2| PREDICTED: Homo sapiens lipase
family member M (LIPM), transcript variant X1, mRNA
Length=1787
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 TTGCTCGGCTCTGT 19
||||||||||||||
Sbjct 1027 TTGCTCGGCTCTGT 1014
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 2337180340
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2