BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= AGTGACTAATGGCTCTGTGATGGC (evalue = 10)
Length=24
Score E
Sequences producing significant alignments: (Bits) Value
gi|1034568642|ref|XM_011539920.2| PREDICTED: Homo sapiens centr... 48.1 2e-05
gi|187608536|ref|NM_018131.4| Homo sapiens centrosomal protein ... 48.1 2e-05
gi|1034568640|ref|XM_017016372.1| PREDICTED: Homo sapiens centr... 48.1 2e-05
gi|1034568643|ref|XM_017016373.1| PREDICTED: Homo sapiens centr... 48.1 2e-05
gi|767963186|ref|XM_011539918.1| PREDICTED: Homo sapiens centro... 48.1 2e-05
gi|187608544|ref|NM_001127182.1| Homo sapiens centrosomal prote... 48.1 2e-05
gi|767963188|ref|XM_011539919.1| PREDICTED: Homo sapiens centro... 48.1 2e-05
gi|197304797|ref|NM_004523.3| Homo sapiens kinesin family membe... 34.2 0.24
gi|1034556678|ref|XM_011541026.2| PREDICTED: Homo sapiens forkh... 32.2 0.94
gi|1034556685|ref|XM_017000695.1| PREDICTED: Homo sapiens forkh... 32.2 0.94
gi|1034556679|ref|XM_006710458.3| PREDICTED: Homo sapiens forkh... 32.2 0.94
gi|1034556683|ref|XM_017000694.1| PREDICTED: Homo sapiens forkh... 32.2 0.94
gi|1034556677|ref|XM_005270632.4| PREDICTED: Homo sapiens forkh... 32.2 0.94
gi|1034556680|ref|XM_006710459.3| PREDICTED: Homo sapiens forkh... 32.2 0.94
gi|311893304|ref|NM_001198851.1| Homo sapiens forkhead box J3 (... 32.2 0.94
gi|311893306|ref|NM_001198852.1| Homo sapiens forkhead box J3 (... 32.2 0.94
gi|311893301|ref|NM_014947.4| Homo sapiens forkhead box J3 (FOX... 32.2 0.94
gi|1034556681|ref|XM_017000693.1| PREDICTED: Homo sapiens forkh... 32.2 0.94
gi|311893302|ref|NM_001198850.1| Homo sapiens forkhead box J3 (... 32.2 0.94
gi|1034695961|ref|XR_001758302.1| PREDICTED: Homo sapiens uncha... 30.2 3.7
gi|1034675440|ref|XM_005277913.4| PREDICTED: Homo sapiens solut... 30.2 3.7
gi|1034675438|ref|XM_011531200.2| PREDICTED: Homo sapiens solut... 30.2 3.7
gi|1034675436|ref|XM_006724847.3| PREDICTED: Homo sapiens solut... 30.2 3.7
gi|1034675437|ref|XM_006724848.3| PREDICTED: Homo sapiens solut... 30.2 3.7
gi|1034675441|ref|XM_011531201.2| PREDICTED: Homo sapiens solut... 30.2 3.7
gi|541862383|ref|NM_019848.4| Homo sapiens solute carrier famil... 30.2 3.7
gi|541862385|ref|NM_001142392.2| Homo sapiens solute carrier fa... 30.2 3.7
gi|541862384|ref|NM_001142391.2| Homo sapiens solute carrier fa... 30.2 3.7
gi|1034657857|ref|XR_001744988.1| PREDICTED: Homo sapiens uncha... 30.2 3.7
gi|564112233|ref|NR_108084.1| Homo sapiens CLSTN2 antisense RNA... 30.2 3.7
> gi|1034568642|ref|XM_011539920.2| PREDICTED: Homo sapiens centrosomal
protein 55 (CEP55), transcript variant X4, mRNA
Length=2348
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%), Gaps = 0/24 (0%)
Strand=Plus/Minus
Query 1 AGTGACTAATGGCTCTGTGATGGC 24
||||||||||||||||||||||||
Sbjct 1245 AGTGACTAATGGCTCTGTGATGGC 1222
> gi|187608536|ref|NM_018131.4| Homo sapiens centrosomal protein
55 (CEP55), transcript variant 1, mRNA
Length=2656
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%), Gaps = 0/24 (0%)
Strand=Plus/Minus
Query 1 AGTGACTAATGGCTCTGTGATGGC 24
||||||||||||||||||||||||
Sbjct 1537 AGTGACTAATGGCTCTGTGATGGC 1514
> gi|1034568640|ref|XM_017016372.1| PREDICTED: Homo sapiens centrosomal
protein 55 (CEP55), transcript variant X3, mRNA
Length=2494
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%), Gaps = 0/24 (0%)
Strand=Plus/Minus
Query 1 AGTGACTAATGGCTCTGTGATGGC 24
||||||||||||||||||||||||
Sbjct 1391 AGTGACTAATGGCTCTGTGATGGC 1368
> gi|1034568643|ref|XM_017016373.1| PREDICTED: Homo sapiens centrosomal
protein 55 (CEP55), transcript variant X5, mRNA
Length=2516
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%), Gaps = 0/24 (0%)
Strand=Plus/Minus
Query 1 AGTGACTAATGGCTCTGTGATGGC 24
||||||||||||||||||||||||
Sbjct 1413 AGTGACTAATGGCTCTGTGATGGC 1390
> gi|767963186|ref|XM_011539918.1| PREDICTED: Homo sapiens centrosomal
protein 55 (CEP55), transcript variant X1, mRNA
Length=2654
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%), Gaps = 0/24 (0%)
Strand=Plus/Minus
Query 1 AGTGACTAATGGCTCTGTGATGGC 24
||||||||||||||||||||||||
Sbjct 1551 AGTGACTAATGGCTCTGTGATGGC 1528
> gi|187608544|ref|NM_001127182.1| Homo sapiens centrosomal protein
55 (CEP55), transcript variant 2, mRNA
Length=2534
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%), Gaps = 0/24 (0%)
Strand=Plus/Minus
Query 1 AGTGACTAATGGCTCTGTGATGGC 24
||||||||||||||||||||||||
Sbjct 1415 AGTGACTAATGGCTCTGTGATGGC 1392
> gi|767963188|ref|XM_011539919.1| PREDICTED: Homo sapiens centrosomal
protein 55 (CEP55), transcript variant X2, mRNA
Length=2522
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%), Gaps = 0/24 (0%)
Strand=Plus/Minus
Query 1 AGTGACTAATGGCTCTGTGATGGC 24
||||||||||||||||||||||||
Sbjct 1419 AGTGACTAATGGCTCTGTGATGGC 1396
> gi|197304797|ref|NM_004523.3| Homo sapiens kinesin family member
11 (KIF11), mRNA
Length=5101
Score = 34.2 bits (17), Expect = 0.24
Identities = 17/17 (100%), Gaps = 0/17 (0%)
Strand=Plus/Plus
Query 3 TGACTAATGGCTCTGTG 19
|||||||||||||||||
Sbjct 4533 TGACTAATGGCTCTGTG 4549
> gi|1034556678|ref|XM_011541026.2| PREDICTED: Homo sapiens forkhead
box J3 (FOXJ3), transcript variant X2, mRNA
Length=5274
Score = 32.2 bits (16), Expect = 0.94
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 9 ATGGCTCTGTGATGGC 24
||||||||||||||||
Sbjct 2012 ATGGCTCTGTGATGGC 1997
> gi|1034556685|ref|XM_017000695.1| PREDICTED: Homo sapiens forkhead
box J3 (FOXJ3), transcript variant X7, mRNA
Length=4876
Score = 32.2 bits (16), Expect = 0.94
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 9 ATGGCTCTGTGATGGC 24
||||||||||||||||
Sbjct 1610 ATGGCTCTGTGATGGC 1595
> gi|1034556679|ref|XM_006710458.3| PREDICTED: Homo sapiens forkhead
box J3 (FOXJ3), transcript variant X3, mRNA
Length=5333
Score = 32.2 bits (16), Expect = 0.94
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 9 ATGGCTCTGTGATGGC 24
||||||||||||||||
Sbjct 2067 ATGGCTCTGTGATGGC 2052
> gi|1034556683|ref|XM_017000694.1| PREDICTED: Homo sapiens forkhead
box J3 (FOXJ3), transcript variant X6, mRNA
Length=4995
Score = 32.2 bits (16), Expect = 0.94
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 9 ATGGCTCTGTGATGGC 24
||||||||||||||||
Sbjct 1724 ATGGCTCTGTGATGGC 1709
> gi|1034556677|ref|XM_005270632.4| PREDICTED: Homo sapiens forkhead
box J3 (FOXJ3), transcript variant X1, mRNA
Length=5119
Score = 32.2 bits (16), Expect = 0.94
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 9 ATGGCTCTGTGATGGC 24
||||||||||||||||
Sbjct 1848 ATGGCTCTGTGATGGC 1833
> gi|1034556680|ref|XM_006710459.3| PREDICTED: Homo sapiens forkhead
box J3 (FOXJ3), transcript variant X4, mRNA
Length=5018
Score = 32.2 bits (16), Expect = 0.94
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 9 ATGGCTCTGTGATGGC 24
||||||||||||||||
Sbjct 1747 ATGGCTCTGTGATGGC 1732
> gi|311893304|ref|NM_001198851.1| Homo sapiens forkhead box J3
(FOXJ3), transcript variant 3, mRNA
Length=5367
Score = 32.2 bits (16), Expect = 0.94
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 9 ATGGCTCTGTGATGGC 24
||||||||||||||||
Sbjct 2081 ATGGCTCTGTGATGGC 2066
> gi|311893306|ref|NM_001198852.1| Homo sapiens forkhead box J3
(FOXJ3), transcript variant 4, mRNA
Length=5127
Score = 32.2 bits (16), Expect = 0.94
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 9 ATGGCTCTGTGATGGC 24
||||||||||||||||
Sbjct 1841 ATGGCTCTGTGATGGC 1826
> gi|311893301|ref|NM_014947.4| Homo sapiens forkhead box J3 (FOXJ3),
transcript variant 1, mRNA
Length=5246
Score = 32.2 bits (16), Expect = 0.94
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 9 ATGGCTCTGTGATGGC 24
||||||||||||||||
Sbjct 1960 ATGGCTCTGTGATGGC 1945
> gi|1034556681|ref|XM_017000693.1| PREDICTED: Homo sapiens forkhead
box J3 (FOXJ3), transcript variant X5, mRNA
Length=5256
Score = 32.2 bits (16), Expect = 0.94
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 9 ATGGCTCTGTGATGGC 24
||||||||||||||||
Sbjct 1985 ATGGCTCTGTGATGGC 1970
> gi|311893302|ref|NM_001198850.1| Homo sapiens forkhead box J3
(FOXJ3), transcript variant 2, mRNA
Length=5324
Score = 32.2 bits (16), Expect = 0.94
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 9 ATGGCTCTGTGATGGC 24
||||||||||||||||
Sbjct 2038 ATGGCTCTGTGATGGC 2023
> gi|1034695961|ref|XR_001758302.1| PREDICTED: Homo sapiens uncharacterized
LOC107986718 (LOC107986718), ncRNA
Length=3611
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 6 CTAATGGCTCTGTGA 20
|||||||||||||||
Sbjct 2670 CTAATGGCTCTGTGA 2684
> gi|1034675440|ref|XM_005277913.4| PREDICTED: Homo sapiens solute
carrier family 10 member 3 (SLC10A3), transcript variant
X4, mRNA
Length=2554
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 9 ATGGCTCTGTGATGG 23
|||||||||||||||
Sbjct 1157 ATGGCTCTGTGATGG 1171
> gi|1034675438|ref|XM_011531200.2| PREDICTED: Homo sapiens solute
carrier family 10 member 3 (SLC10A3), transcript variant
X3, mRNA
Length=2107
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 9 ATGGCTCTGTGATGG 23
|||||||||||||||
Sbjct 710 ATGGCTCTGTGATGG 724
> gi|1034675436|ref|XM_006724847.3| PREDICTED: Homo sapiens solute
carrier family 10 member 3 (SLC10A3), transcript variant
X1, mRNA
Length=2100
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 9 ATGGCTCTGTGATGG 23
|||||||||||||||
Sbjct 678 ATGGCTCTGTGATGG 692
> gi|1034675437|ref|XM_006724848.3| PREDICTED: Homo sapiens solute
carrier family 10 member 3 (SLC10A3), transcript variant
X2, mRNA
Length=2013
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 9 ATGGCTCTGTGATGG 23
|||||||||||||||
Sbjct 678 ATGGCTCTGTGATGG 692
> gi|1034675441|ref|XM_011531201.2| PREDICTED: Homo sapiens solute
carrier family 10 member 3 (SLC10A3), transcript variant
X5, mRNA
Length=1836
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 9 ATGGCTCTGTGATGG 23
|||||||||||||||
Sbjct 414 ATGGCTCTGTGATGG 428
> gi|541862383|ref|NM_019848.4| Homo sapiens solute carrier family
10 member 3 (SLC10A3), transcript variant 1, mRNA
Length=2179
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 9 ATGGCTCTGTGATGG 23
|||||||||||||||
Sbjct 735 ATGGCTCTGTGATGG 749
> gi|541862385|ref|NM_001142392.2| Homo sapiens solute carrier
family 10 member 3 (SLC10A3), transcript variant 3, mRNA
Length=1944
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 9 ATGGCTCTGTGATGG 23
|||||||||||||||
Sbjct 500 ATGGCTCTGTGATGG 514
> gi|541862384|ref|NM_001142391.2| Homo sapiens solute carrier
family 10 member 3 (SLC10A3), transcript variant 2, mRNA
Length=1857
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 9 ATGGCTCTGTGATGG 23
|||||||||||||||
Sbjct 500 ATGGCTCTGTGATGG 514
> gi|1034657857|ref|XR_001744988.1| PREDICTED: Homo sapiens uncharacterized
LOC107986718 (LOC107986718), ncRNA
Length=3611
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 6 CTAATGGCTCTGTGA 20
|||||||||||||||
Sbjct 2670 CTAATGGCTCTGTGA 2684
> gi|564112233|ref|NR_108084.1| Homo sapiens CLSTN2 antisense RNA
1 (CLSTN2-AS1), long non-coding RNA
Length=2726
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 2 GTGACTAATGGCTCT 16
|||||||||||||||
Sbjct 2043 GTGACTAATGGCTCT 2057
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 4674360680
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2