BLASTN 2.4.0+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Database: rna.fa
           176,426 sequences; 587,117,901 total letters



Query= AGTCCTTCCACGATACCAAAGT (evalue = 10)

Length=22
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  gi|576583514|ref|NM_001256799.2| Homo sapiens glyceraldehyde-3-...  44.1    2e-04
  gi|576583523|ref|NM_001289746.1| Homo sapiens glyceraldehyde-3-...  44.1    2e-04
  gi|576583510|ref|NM_002046.5| Homo sapiens glyceraldehyde-3-pho...  44.1    2e-04
  gi|576583518|ref|NM_001289745.1| Homo sapiens glyceraldehyde-3-...  44.1    2e-04
  gi|950426250|ref|NM_000863.2| Homo sapiens 5-hydroxytryptamine ...  30.2    2.8  


> gi|576583514|ref|NM_001256799.2| Homo sapiens glyceraldehyde-3-phosphate 
dehydrogenase (GAPDH), transcript variant 2, mRNA
Length=1455

 Score = 44.1 bits (22),  Expect = 2e-04
 Identities = 22/22 (100%), Gaps = 0/22 (0%)
 Strand=Plus/Minus

Query  1    AGTCCTTCCACGATACCAAAGT  22
            ||||||||||||||||||||||
Sbjct  743  AGTCCTTCCACGATACCAAAGT  722


> gi|576583523|ref|NM_001289746.1| Homo sapiens glyceraldehyde-3-phosphate 
dehydrogenase (GAPDH), transcript variant 4, mRNA
Length=1407

 Score = 44.1 bits (22),  Expect = 2e-04
 Identities = 22/22 (100%), Gaps = 0/22 (0%)
 Strand=Plus/Minus

Query  1    AGTCCTTCCACGATACCAAAGT  22
            ||||||||||||||||||||||
Sbjct  695  AGTCCTTCCACGATACCAAAGT  674


> gi|576583510|ref|NM_002046.5| Homo sapiens glyceraldehyde-3-phosphate 
dehydrogenase (GAPDH), transcript variant 1, mRNA
Length=1421

 Score = 44.1 bits (22),  Expect = 2e-04
 Identities = 22/22 (100%), Gaps = 0/22 (0%)
 Strand=Plus/Minus

Query  1    AGTCCTTCCACGATACCAAAGT  22
            ||||||||||||||||||||||
Sbjct  709  AGTCCTTCCACGATACCAAAGT  688


> gi|576583518|ref|NM_001289745.1| Homo sapiens glyceraldehyde-3-phosphate 
dehydrogenase (GAPDH), transcript variant 3, mRNA
Length=1513

 Score = 44.1 bits (22),  Expect = 2e-04
 Identities = 22/22 (100%), Gaps = 0/22 (0%)
 Strand=Plus/Minus

Query  1    AGTCCTTCCACGATACCAAAGT  22
            ||||||||||||||||||||||
Sbjct  801  AGTCCTTCCACGATACCAAAGT  780


> gi|950426250|ref|NM_000863.2| Homo sapiens 5-hydroxytryptamine 
receptor 1B (HTR1B), mRNA
Length=3175

 Score = 30.2 bits (15),  Expect = 2.8
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Minus

Query  7     TCCACGATACCAAAG  21
             |||||||||||||||
Sbjct  2135  TCCACGATACCAAAG  2121



Lambda      K        H
    1.37    0.711     1.31 

Gapped
Lambda      K        H
    1.37    0.711     1.31 

Effective search space used: 3505770510


  Database: rna.fa
    Posted date:  Jan 6, 2017  3:58 PM
  Number of letters in database: 587,117,901
  Number of sequences in database:  176,426



Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2