BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= AGCTACTGCCTCCGGTCTTC (evalue = 10)
Length=20
Score E
Sequences producing significant alignments: (Bits) Value
gi|1034560350|ref|XM_017001855.1| PREDICTED: Homo sapiens caten... 40.1 0.002
gi|1034560348|ref|XM_017001854.1| PREDICTED: Homo sapiens caten... 40.1 0.002
gi|59889553|ref|NM_020248.2| Homo sapiens catenin beta interact... 40.1 0.002
gi|59889554|ref|NM_001012329.1| Homo sapiens catenin beta inter... 40.1 0.002
gi|1034560346|ref|XM_017001853.1| PREDICTED: Homo sapiens caten... 40.1 0.002
gi|1034686579|ref|XR_001734631.1| PREDICTED: Homo sapiens uncha... 30.2 1.9
gi|1034686580|ref|XR_001734632.1| PREDICTED: Homo sapiens uncha... 30.2 1.9
gi|1034686578|ref|XR_001734630.1| PREDICTED: Homo sapiens uncha... 30.2 1.9
gi|1034602648|ref|XR_001752774.1| PREDICTED: Homo sapiens uncha... 30.2 1.9
gi|1034602649|ref|XR_001752775.1| PREDICTED: Homo sapiens uncha... 30.2 1.9
gi|1034602647|ref|XR_001752773.1| PREDICTED: Homo sapiens uncha... 30.2 1.9
gi|1034641065|ref|XM_005263206.3| PREDICTED: Homo sapiens uncou... 28.2 7.3
> gi|1034560350|ref|XM_017001855.1| PREDICTED: Homo sapiens catenin
beta interacting protein 1 (CTNNBIP1), transcript variant
X3, mRNA
Length=2937
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 AGCTACTGCCTCCGGTCTTC 20
||||||||||||||||||||
Sbjct 497 AGCTACTGCCTCCGGTCTTC 478
> gi|1034560348|ref|XM_017001854.1| PREDICTED: Homo sapiens catenin
beta interacting protein 1 (CTNNBIP1), transcript variant
X2, mRNA
Length=3094
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 AGCTACTGCCTCCGGTCTTC 20
||||||||||||||||||||
Sbjct 654 AGCTACTGCCTCCGGTCTTC 635
> gi|59889553|ref|NM_020248.2| Homo sapiens catenin beta interacting
protein 1 (CTNNBIP1), transcript variant 1, mRNA
Length=2995
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 AGCTACTGCCTCCGGTCTTC 20
||||||||||||||||||||
Sbjct 555 AGCTACTGCCTCCGGTCTTC 536
> gi|59889554|ref|NM_001012329.1| Homo sapiens catenin beta interacting
protein 1 (CTNNBIP1), transcript variant 2, mRNA
Length=2961
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 AGCTACTGCCTCCGGTCTTC 20
||||||||||||||||||||
Sbjct 521 AGCTACTGCCTCCGGTCTTC 502
> gi|1034560346|ref|XM_017001853.1| PREDICTED: Homo sapiens catenin
beta interacting protein 1 (CTNNBIP1), transcript variant
X1, mRNA
Length=3220
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 1 AGCTACTGCCTCCGGTCTTC 20
||||||||||||||||||||
Sbjct 780 AGCTACTGCCTCCGGTCTTC 761
> gi|1034686579|ref|XR_001734631.1| PREDICTED: Homo sapiens uncharacterized
LOC105371507 (LOC105371507), transcript variant
X2, ncRNA
Length=1801
Score = 30.2 bits (15), Expect = 1.9
Identities = 18/19 (95%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 2 GCTACTGCCTCCGGTCTTC 20
|||||||||||| ||||||
Sbjct 1084 GCTACTGCCTCCCGTCTTC 1066
> gi|1034686580|ref|XR_001734632.1| PREDICTED: Homo sapiens uncharacterized
LOC105371507 (LOC105371507), transcript variant
X3, ncRNA
Length=1464
Score = 30.2 bits (15), Expect = 1.9
Identities = 18/19 (95%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 2 GCTACTGCCTCCGGTCTTC 20
|||||||||||| ||||||
Sbjct 1109 GCTACTGCCTCCCGTCTTC 1091
> gi|1034686578|ref|XR_001734630.1| PREDICTED: Homo sapiens uncharacterized
LOC105371507 (LOC105371507), transcript variant
X1, ncRNA
Length=1826
Score = 30.2 bits (15), Expect = 1.9
Identities = 18/19 (95%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 2 GCTACTGCCTCCGGTCTTC 20
|||||||||||| ||||||
Sbjct 1109 GCTACTGCCTCCCGTCTTC 1091
> gi|1034602648|ref|XR_001752774.1| PREDICTED: Homo sapiens uncharacterized
LOC105371507 (LOC105371507), transcript variant
X2, ncRNA
Length=1801
Score = 30.2 bits (15), Expect = 1.9
Identities = 18/19 (95%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 2 GCTACTGCCTCCGGTCTTC 20
|||||||||||| ||||||
Sbjct 1084 GCTACTGCCTCCCGTCTTC 1066
> gi|1034602649|ref|XR_001752775.1| PREDICTED: Homo sapiens uncharacterized
LOC105371507 (LOC105371507), transcript variant
X3, ncRNA
Length=1464
Score = 30.2 bits (15), Expect = 1.9
Identities = 18/19 (95%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 2 GCTACTGCCTCCGGTCTTC 20
|||||||||||| ||||||
Sbjct 1109 GCTACTGCCTCCCGTCTTC 1091
> gi|1034602647|ref|XR_001752773.1| PREDICTED: Homo sapiens uncharacterized
LOC105371507 (LOC105371507), transcript variant
X1, ncRNA
Length=1826
Score = 30.2 bits (15), Expect = 1.9
Identities = 18/19 (95%), Gaps = 0/19 (0%)
Strand=Plus/Minus
Query 2 GCTACTGCCTCCGGTCTTC 20
|||||||||||| ||||||
Sbjct 1109 GCTACTGCCTCCCGTCTTC 1091
> gi|1034641065|ref|XM_005263206.3| PREDICTED: Homo sapiens uncoupling
protein 1 (UCP1), transcript variant X1, mRNA
Length=5232
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%), Gaps = 0/14 (0%)
Strand=Plus/Minus
Query 6 CTGCCTCCGGTCTT 19
||||||||||||||
Sbjct 2634 CTGCCTCCGGTCTT 2621
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 2337180340
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2