BLASTN 2.4.0+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Database: rna.fa
176,426 sequences; 587,117,901 total letters
Query= AGCAGCAAGAAGAACAAACAAGGG (evalue = 10)
Length=24
Score E
Sequences producing significant alignments: (Bits) Value
gi|1034568642|ref|XM_011539920.2| PREDICTED: Homo sapiens centr... 48.1 2e-05
gi|187608536|ref|NM_018131.4| Homo sapiens centrosomal protein ... 48.1 2e-05
gi|1034568640|ref|XM_017016372.1| PREDICTED: Homo sapiens centr... 48.1 2e-05
gi|1034568643|ref|XM_017016373.1| PREDICTED: Homo sapiens centr... 48.1 2e-05
gi|767963186|ref|XM_011539918.1| PREDICTED: Homo sapiens centro... 48.1 2e-05
gi|187608544|ref|NM_001127182.1| Homo sapiens centrosomal prote... 48.1 2e-05
gi|767963188|ref|XM_011539919.1| PREDICTED: Homo sapiens centro... 48.1 2e-05
gi|1034648062|ref|XR_001743060.1| PREDICTED: Homo sapiens thios... 40.1 0.004
gi|1034643292|ref|XM_011534418.2| PREDICTED: Homo sapiens SLU7 ... 36.2 0.060
gi|1034643291|ref|XM_005265793.3| PREDICTED: Homo sapiens SLU7 ... 36.2 0.060
gi|119393888|ref|NM_006425.4| Homo sapiens SLU7 homolog, splici... 36.2 0.060
gi|767977989|ref|XM_005266505.2| PREDICTED: Homo sapiens sarcog... 32.2 0.94
gi|209529740|ref|NM_000231.2| Homo sapiens sarcoglycan gamma (S... 32.2 0.94
gi|1034584821|ref|XM_006719861.3| PREDICTED: Homo sapiens sarco... 32.2 0.94
gi|1034613473|ref|XM_006712475.3| PREDICTED: Homo sapiens high ... 32.2 0.94
gi|1034613474|ref|XM_011511058.2| PREDICTED: Homo sapiens high ... 32.2 0.94
gi|1034689522|ref|XR_934122.2| PREDICTED: Homo sapiens uncharac... 30.2 3.7
gi|211057415|ref|NM_001136499.1| Homo sapiens zinc finger prote... 30.2 3.7
gi|1008909362|ref|NM_001321349.1| Homo sapiens zinc finger prot... 30.2 3.7
gi|1034607448|ref|XM_017026652.1| PREDICTED: Homo sapiens zinc ... 30.2 3.7
gi|1034607456|ref|XM_017026655.1| PREDICTED: Homo sapiens zinc ... 30.2 3.7
gi|1034607458|ref|XM_017026656.1| PREDICTED: Homo sapiens zinc ... 30.2 3.7
gi|1034607451|ref|XM_017026653.1| PREDICTED: Homo sapiens zinc ... 30.2 3.7
gi|1034607453|ref|XM_017026654.1| PREDICTED: Homo sapiens zinc ... 30.2 3.7
gi|1034607455|ref|XM_011526833.2| PREDICTED: Homo sapiens zinc ... 30.2 3.7
gi|1034607461|ref|XM_017026657.1| PREDICTED: Homo sapiens zinc ... 30.2 3.7
gi|1034607460|ref|XR_001753670.1| PREDICTED: Homo sapiens zinc ... 30.2 3.7
gi|1034607450|ref|XR_001753669.1| PREDICTED: Homo sapiens zinc ... 30.2 3.7
gi|1034618516|ref|XR_924055.2| PREDICTED: Homo sapiens uncharac... 30.2 3.7
gi|270265878|ref|NM_001168335.1| Homo sapiens malic enzyme 2 (M... 30.2 3.7
gi|270265877|ref|NM_002396.4| Homo sapiens malic enzyme 2 (ME2)... 30.2 3.7
gi|767998791|ref|XR_935223.1| PREDICTED: Homo sapiens malic enz... 30.2 3.7
gi|1034587769|ref|XM_011537037.2| PREDICTED: Homo sapiens Fanco... 30.2 3.7
gi|1034587764|ref|XM_017021526.1| PREDICTED: Homo sapiens Fanco... 30.2 3.7
gi|1034587760|ref|XM_017021524.1| PREDICTED: Homo sapiens Fanco... 30.2 3.7
gi|1034587766|ref|XM_017021527.1| PREDICTED: Homo sapiens Fanco... 30.2 3.7
gi|1034587759|ref|XR_001750471.1| PREDICTED: Homo sapiens Fanco... 30.2 3.7
gi|1034587757|ref|XM_017021523.1| PREDICTED: Homo sapiens Fanco... 30.2 3.7
gi|1034587756|ref|XR_001750470.1| PREDICTED: Homo sapiens Fanco... 30.2 3.7
gi|1034587762|ref|XM_017021525.1| PREDICTED: Homo sapiens Fanco... 30.2 3.7
gi|1034587755|ref|XM_011537035.2| PREDICTED: Homo sapiens Fanco... 30.2 3.7
gi|1034587754|ref|XM_011537034.2| PREDICTED: Homo sapiens Fanco... 30.2 3.7
gi|815890933|ref|NM_001308133.1| Homo sapiens Fanconi anemia co... 30.2 3.7
gi|815890932|ref|NM_020937.3| Homo sapiens Fanconi anemia compl... 30.2 3.7
gi|1034586029|ref|XM_011536372.2| PREDICTED: Homo sapiens adapt... 30.2 3.7
gi|1034586028|ref|XM_005267293.4| PREDICTED: Homo sapiens adapt... 30.2 3.7
gi|1034586027|ref|XM_011536371.2| PREDICTED: Homo sapiens adapt... 30.2 3.7
gi|315139002|ref|NM_003774.4| Homo sapiens polypeptide N-acetyl... 30.2 3.7
gi|315221120|ref|NM_001199781.1| Homo sapiens POC1B-GALNT4 read... 30.2 3.7
gi|322960990|ref|NM_017460.5| Homo sapiens cytochrome P450 fami... 30.2 3.7
gi|322960937|ref|NM_001202855.2| Homo sapiens cytochrome P450 f... 30.2 3.7
> gi|1034568642|ref|XM_011539920.2| PREDICTED: Homo sapiens centrosomal
protein 55 (CEP55), transcript variant X4, mRNA
Length=2348
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%), Gaps = 0/24 (0%)
Strand=Plus/Plus
Query 1 AGCAGCAAGAAGAACAAACAAGGG 24
||||||||||||||||||||||||
Sbjct 1034 AGCAGCAAGAAGAACAAACAAGGG 1057
> gi|187608536|ref|NM_018131.4| Homo sapiens centrosomal protein
55 (CEP55), transcript variant 1, mRNA
Length=2656
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%), Gaps = 0/24 (0%)
Strand=Plus/Plus
Query 1 AGCAGCAAGAAGAACAAACAAGGG 24
||||||||||||||||||||||||
Sbjct 1326 AGCAGCAAGAAGAACAAACAAGGG 1349
> gi|1034568640|ref|XM_017016372.1| PREDICTED: Homo sapiens centrosomal
protein 55 (CEP55), transcript variant X3, mRNA
Length=2494
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%), Gaps = 0/24 (0%)
Strand=Plus/Plus
Query 1 AGCAGCAAGAAGAACAAACAAGGG 24
||||||||||||||||||||||||
Sbjct 1180 AGCAGCAAGAAGAACAAACAAGGG 1203
> gi|1034568643|ref|XM_017016373.1| PREDICTED: Homo sapiens centrosomal
protein 55 (CEP55), transcript variant X5, mRNA
Length=2516
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%), Gaps = 0/24 (0%)
Strand=Plus/Plus
Query 1 AGCAGCAAGAAGAACAAACAAGGG 24
||||||||||||||||||||||||
Sbjct 1202 AGCAGCAAGAAGAACAAACAAGGG 1225
> gi|767963186|ref|XM_011539918.1| PREDICTED: Homo sapiens centrosomal
protein 55 (CEP55), transcript variant X1, mRNA
Length=2654
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%), Gaps = 0/24 (0%)
Strand=Plus/Plus
Query 1 AGCAGCAAGAAGAACAAACAAGGG 24
||||||||||||||||||||||||
Sbjct 1340 AGCAGCAAGAAGAACAAACAAGGG 1363
> gi|187608544|ref|NM_001127182.1| Homo sapiens centrosomal protein
55 (CEP55), transcript variant 2, mRNA
Length=2534
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%), Gaps = 0/24 (0%)
Strand=Plus/Plus
Query 1 AGCAGCAAGAAGAACAAACAAGGG 24
||||||||||||||||||||||||
Sbjct 1204 AGCAGCAAGAAGAACAAACAAGGG 1227
> gi|767963188|ref|XM_011539919.1| PREDICTED: Homo sapiens centrosomal
protein 55 (CEP55), transcript variant X2, mRNA
Length=2522
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%), Gaps = 0/24 (0%)
Strand=Plus/Plus
Query 1 AGCAGCAAGAAGAACAAACAAGGG 24
||||||||||||||||||||||||
Sbjct 1208 AGCAGCAAGAAGAACAAACAAGGG 1231
> gi|1034648062|ref|XR_001743060.1| PREDICTED: Homo sapiens thiosulfate
sulfurtransferase (rhodanese)-like domain containing
3 (TSTD3), transcript variant X2, misc_RNA
Length=5456
Score = 40.1 bits (20), Expect = 0.004
Identities = 20/20 (100%), Gaps = 0/20 (0%)
Strand=Plus/Minus
Query 3 CAGCAAGAAGAACAAACAAG 22
||||||||||||||||||||
Sbjct 3825 CAGCAAGAAGAACAAACAAG 3806
> gi|1034643292|ref|XM_011534418.2| PREDICTED: Homo sapiens SLU7
homolog, splicing factor (SLU7), transcript variant X2, mRNA
Length=2140
Score = 36.2 bits (18), Expect = 0.060
Identities = 21/22 (95%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 2 GCAGCAAGAAGAACAAACAAGG 23
||||||||||||| ||||||||
Sbjct 2070 GCAGCAAGAAGAATAAACAAGG 2049
> gi|1034643291|ref|XM_005265793.3| PREDICTED: Homo sapiens SLU7
homolog, splicing factor (SLU7), transcript variant X1, mRNA
Length=3907
Score = 36.2 bits (18), Expect = 0.060
Identities = 21/22 (95%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 2 GCAGCAAGAAGAACAAACAAGG 23
||||||||||||| ||||||||
Sbjct 2367 GCAGCAAGAAGAATAAACAAGG 2346
> gi|119393888|ref|NM_006425.4| Homo sapiens SLU7 homolog, splicing
factor (SLU7), mRNA
Length=3570
Score = 36.2 bits (18), Expect = 0.060
Identities = 21/22 (95%), Gaps = 0/22 (0%)
Strand=Plus/Minus
Query 2 GCAGCAAGAAGAACAAACAAGG 23
||||||||||||| ||||||||
Sbjct 2020 GCAGCAAGAAGAATAAACAAGG 1999
> gi|767977989|ref|XM_005266505.2| PREDICTED: Homo sapiens sarcoglycan
gamma (SGCG), transcript variant X2, mRNA
Length=1748
Score = 32.2 bits (16), Expect = 0.94
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 7 AAGAAGAACAAACAAG 22
||||||||||||||||
Sbjct 374 AAGAAGAACAAACAAG 359
> gi|209529740|ref|NM_000231.2| Homo sapiens sarcoglycan gamma
(SGCG), mRNA
Length=1661
Score = 32.2 bits (16), Expect = 0.94
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 7 AAGAAGAACAAACAAG 22
||||||||||||||||
Sbjct 281 AAGAAGAACAAACAAG 266
> gi|1034584821|ref|XM_006719861.3| PREDICTED: Homo sapiens sarcoglycan
gamma (SGCG), transcript variant X1, mRNA
Length=1839
Score = 32.2 bits (16), Expect = 0.94
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Minus
Query 7 AAGAAGAACAAACAAG 22
||||||||||||||||
Sbjct 465 AAGAAGAACAAACAAG 450
> gi|1034613473|ref|XM_006712475.3| PREDICTED: Homo sapiens high
density lipoprotein binding protein (HDLBP), transcript variant
X1, mRNA
Length=6548
Score = 32.2 bits (16), Expect = 0.94
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 3 CAGCAAGAAGAACAAA 18
||||||||||||||||
Sbjct 222 CAGCAAGAAGAACAAA 237
> gi|1034613474|ref|XM_011511058.2| PREDICTED: Homo sapiens high
density lipoprotein binding protein (HDLBP), transcript variant
X2, mRNA
Length=6712
Score = 32.2 bits (16), Expect = 0.94
Identities = 16/16 (100%), Gaps = 0/16 (0%)
Strand=Plus/Plus
Query 3 CAGCAAGAAGAACAAA 18
||||||||||||||||
Sbjct 386 CAGCAAGAAGAACAAA 401
> gi|1034689522|ref|XR_934122.2| PREDICTED: Homo sapiens uncharacterized
LOC105373966 (LOC105373966), ncRNA
Length=2223
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 10 AAGAACAAACAAGGG 24
|||||||||||||||
Sbjct 1505 AAGAACAAACAAGGG 1491
> gi|211057415|ref|NM_001136499.1| Homo sapiens zinc finger protein
841 (ZNF841), transcript variant 1, mRNA
Length=3876
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 8 AGAAGAACAAACAAG 22
|||||||||||||||
Sbjct 3740 AGAAGAACAAACAAG 3726
> gi|1008909362|ref|NM_001321349.1| Homo sapiens zinc finger protein
841 (ZNF841), transcript variant 2, mRNA
Length=3620
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 8 AGAAGAACAAACAAG 22
|||||||||||||||
Sbjct 3484 AGAAGAACAAACAAG 3470
> gi|1034607448|ref|XM_017026652.1| PREDICTED: Homo sapiens zinc
finger protein 841 (ZNF841), transcript variant X1, mRNA
Length=3426
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 8 AGAAGAACAAACAAG 22
|||||||||||||||
Sbjct 3289 AGAAGAACAAACAAG 3275
> gi|1034607456|ref|XM_017026655.1| PREDICTED: Homo sapiens zinc
finger protein 841 (ZNF841), transcript variant X6, mRNA
Length=3423
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 8 AGAAGAACAAACAAG 22
|||||||||||||||
Sbjct 3286 AGAAGAACAAACAAG 3272
> gi|1034607458|ref|XM_017026656.1| PREDICTED: Homo sapiens zinc
finger protein 841 (ZNF841), transcript variant X7, mRNA
Length=5472
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 8 AGAAGAACAAACAAG 22
|||||||||||||||
Sbjct 5335 AGAAGAACAAACAAG 5321
> gi|1034607451|ref|XM_017026653.1| PREDICTED: Homo sapiens zinc
finger protein 841 (ZNF841), transcript variant X3, mRNA
Length=3835
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 8 AGAAGAACAAACAAG 22
|||||||||||||||
Sbjct 3698 AGAAGAACAAACAAG 3684
> gi|1034607453|ref|XM_017026654.1| PREDICTED: Homo sapiens zinc
finger protein 841 (ZNF841), transcript variant X4, mRNA
Length=3821
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 8 AGAAGAACAAACAAG 22
|||||||||||||||
Sbjct 3684 AGAAGAACAAACAAG 3670
> gi|1034607455|ref|XM_011526833.2| PREDICTED: Homo sapiens zinc
finger protein 841 (ZNF841), transcript variant X5, mRNA
Length=3769
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 8 AGAAGAACAAACAAG 22
|||||||||||||||
Sbjct 3632 AGAAGAACAAACAAG 3618
> gi|1034607461|ref|XM_017026657.1| PREDICTED: Homo sapiens zinc
finger protein 841 (ZNF841), transcript variant X9, mRNA
Length=3766
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 8 AGAAGAACAAACAAG 22
|||||||||||||||
Sbjct 3629 AGAAGAACAAACAAG 3615
> gi|1034607460|ref|XR_001753670.1| PREDICTED: Homo sapiens zinc
finger protein 841 (ZNF841), transcript variant X8, misc_RNA
Length=6690
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 8 AGAAGAACAAACAAG 22
|||||||||||||||
Sbjct 5335 AGAAGAACAAACAAG 5321
> gi|1034607450|ref|XR_001753669.1| PREDICTED: Homo sapiens zinc
finger protein 841 (ZNF841), transcript variant X2, misc_RNA
Length=5090
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 8 AGAAGAACAAACAAG 22
|||||||||||||||
Sbjct 3289 AGAAGAACAAACAAG 3275
> gi|1034618516|ref|XR_924055.2| PREDICTED: Homo sapiens uncharacterized
LOC105373966 (LOC105373966), ncRNA
Length=2223
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Minus
Query 10 AAGAACAAACAAGGG 24
|||||||||||||||
Sbjct 1505 AAGAACAAACAAGGG 1491
> gi|270265878|ref|NM_001168335.1| Homo sapiens malic enzyme 2
(ME2), transcript variant 2, mRNA
Length=4468
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 10 AAGAACAAACAAGGG 24
|||||||||||||||
Sbjct 355 AAGAACAAACAAGGG 369
> gi|270265877|ref|NM_002396.4| Homo sapiens malic enzyme 2 (ME2),
transcript variant 1, mRNA
Length=4638
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 10 AAGAACAAACAAGGG 24
|||||||||||||||
Sbjct 355 AAGAACAAACAAGGG 369
> gi|767998791|ref|XR_935223.1| PREDICTED: Homo sapiens malic enzyme
2 (ME2), transcript variant X1, misc_RNA
Length=3115
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 10 AAGAACAAACAAGGG 24
|||||||||||||||
Sbjct 813 AAGAACAAACAAGGG 827
> gi|1034587769|ref|XM_011537037.2| PREDICTED: Homo sapiens Fanconi
anemia complementation group M (FANCM), transcript variant
X11, mRNA
Length=5096
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 7 AAGAAGAACAAACAA 21
|||||||||||||||
Sbjct 3672 AAGAAGAACAAACAA 3686
> gi|1034587764|ref|XM_017021526.1| PREDICTED: Homo sapiens Fanconi
anemia complementation group M (FANCM), transcript variant
X8, mRNA
Length=5650
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 7 AAGAAGAACAAACAA 21
|||||||||||||||
Sbjct 4226 AAGAAGAACAAACAA 4240
> gi|1034587760|ref|XM_017021524.1| PREDICTED: Homo sapiens Fanconi
anemia complementation group M (FANCM), transcript variant
X6, mRNA
Length=5839
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 7 AAGAAGAACAAACAA 21
|||||||||||||||
Sbjct 4415 AAGAAGAACAAACAA 4429
> gi|1034587766|ref|XM_017021527.1| PREDICTED: Homo sapiens Fanconi
anemia complementation group M (FANCM), transcript variant
X9, mRNA
Length=6415
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 7 AAGAAGAACAAACAA 21
|||||||||||||||
Sbjct 4992 AAGAAGAACAAACAA 5006
> gi|1034587759|ref|XR_001750471.1| PREDICTED: Homo sapiens Fanconi
anemia complementation group M (FANCM), transcript variant
X5, misc_RNA
Length=6225
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 7 AAGAAGAACAAACAA 21
|||||||||||||||
Sbjct 5178 AAGAAGAACAAACAA 5192
> gi|1034587757|ref|XM_017021523.1| PREDICTED: Homo sapiens Fanconi
anemia complementation group M (FANCM), transcript variant
X4, mRNA
Length=5948
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 7 AAGAAGAACAAACAA 21
|||||||||||||||
Sbjct 5193 AAGAAGAACAAACAA 5207
> gi|1034587756|ref|XR_001750470.1| PREDICTED: Homo sapiens Fanconi
anemia complementation group M (FANCM), transcript variant
X3, misc_RNA
Length=6240
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 7 AAGAAGAACAAACAA 21
|||||||||||||||
Sbjct 5193 AAGAAGAACAAACAA 5207
> gi|1034587762|ref|XM_017021525.1| PREDICTED: Homo sapiens Fanconi
anemia complementation group M (FANCM), transcript variant
X7, mRNA
Length=6406
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 7 AAGAAGAACAAACAA 21
|||||||||||||||
Sbjct 4982 AAGAAGAACAAACAA 4996
> gi|1034587755|ref|XM_011537035.2| PREDICTED: Homo sapiens Fanconi
anemia complementation group M (FANCM), transcript variant
X2, mRNA
Length=6539
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 7 AAGAAGAACAAACAA 21
|||||||||||||||
Sbjct 5115 AAGAAGAACAAACAA 5129
> gi|1034587754|ref|XM_011537034.2| PREDICTED: Homo sapiens Fanconi
anemia complementation group M (FANCM), transcript variant
X1, mRNA
Length=6617
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 7 AAGAAGAACAAACAA 21
|||||||||||||||
Sbjct 5193 AAGAAGAACAAACAA 5207
> gi|815890933|ref|NM_001308133.1| Homo sapiens Fanconi anemia
complementation group M (FANCM), transcript variant 2, mRNA
Length=7060
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 7 AAGAAGAACAAACAA 21
|||||||||||||||
Sbjct 5101 AAGAAGAACAAACAA 5115
> gi|815890932|ref|NM_020937.3| Homo sapiens Fanconi anemia complementation
group M (FANCM), transcript variant 1, mRNA
Length=7138
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 7 AAGAAGAACAAACAA 21
|||||||||||||||
Sbjct 5179 AAGAAGAACAAACAA 5193
> gi|1034586029|ref|XM_011536372.2| PREDICTED: Homo sapiens adaptor
related protein complex 4 sigma 1 subunit (AP4S1), transcript
variant X3, mRNA
Length=3868
Score = 30.2 bits (15), Expect = 3.7
Identities = 18/19 (95%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 3 CAGCAAGAAGAACAAACAA 21
|||| ||||||||||||||
Sbjct 2621 CAGCCAGAAGAACAAACAA 2639
> gi|1034586028|ref|XM_005267293.4| PREDICTED: Homo sapiens adaptor
related protein complex 4 sigma 1 subunit (AP4S1), transcript
variant X2, mRNA
Length=3904
Score = 30.2 bits (15), Expect = 3.7
Identities = 18/19 (95%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 3 CAGCAAGAAGAACAAACAA 21
|||| ||||||||||||||
Sbjct 2657 CAGCCAGAAGAACAAACAA 2675
> gi|1034586027|ref|XM_011536371.2| PREDICTED: Homo sapiens adaptor
related protein complex 4 sigma 1 subunit (AP4S1), transcript
variant X1, mRNA
Length=3474
Score = 30.2 bits (15), Expect = 3.7
Identities = 18/19 (95%), Gaps = 0/19 (0%)
Strand=Plus/Plus
Query 3 CAGCAAGAAGAACAAACAA 21
|||| ||||||||||||||
Sbjct 2227 CAGCCAGAAGAACAAACAA 2245
> gi|315139002|ref|NM_003774.4| Homo sapiens polypeptide N-acetylgalactosaminyltransferase
4 (GALNT4), mRNA
Length=5408
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 1 AGCAGCAAGAAGAAC 15
|||||||||||||||
Sbjct 529 AGCAGCAAGAAGAAC 543
> gi|315221120|ref|NM_001199781.1| Homo sapiens POC1B-GALNT4 readthrough
(POC1B-GALNT4), transcript variant 1, mRNA
Length=5507
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 1 AGCAGCAAGAAGAAC 15
|||||||||||||||
Sbjct 630 AGCAGCAAGAAGAAC 644
> gi|322960990|ref|NM_017460.5| Homo sapiens cytochrome P450 family
3 subfamily A member 4 (CYP3A4), transcript variant 1,
mRNA
Length=2792
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 3 CAGCAAGAAGAACAA 17
|||||||||||||||
Sbjct 1364 CAGCAAGAAGAACAA 1378
> gi|322960937|ref|NM_001202855.2| Homo sapiens cytochrome P450
family 3 subfamily A member 4 (CYP3A4), transcript variant
2, mRNA
Length=2789
Score = 30.2 bits (15), Expect = 3.7
Identities = 15/15 (100%), Gaps = 0/15 (0%)
Strand=Plus/Plus
Query 3 CAGCAAGAAGAACAA 17
|||||||||||||||
Sbjct 1361 CAGCAAGAAGAACAA 1375
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Effective search space used: 4674360680
Database: rna.fa
Posted date: Jan 6, 2017 3:58 PM
Number of letters in database: 587,117,901
Number of sequences in database: 176,426
Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2