BLASTN 2.4.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: rna.fa 176,426 sequences; 587,117,901 total letters Query= AGAGAATGTCCAAGGTGTAGTC (evalue = 10) Length=22 Score E Sequences producing significant alignments: (Bits) Value gi|1034601735|ref|XR_934577.2| PREDICTED: Homo sapiens protein ... 44.1 2e-04 gi|312434022|ref|NM_003620.3| Homo sapiens protein phosphatase,... 44.1 2e-04 gi|383087740|ref|NR_001564.2| Homo sapiens X inactive specific ... 30.2 2.8 gi|1034596580|ref|XM_011522741.2| PREDICTED: Homo sapiens sorti... 30.2 2.8 gi|673921630|ref|NM_032167.4| Homo sapiens sorting nexin 29 (SN... 30.2 2.8 gi|1034566777|ref|XM_011539371.2| PREDICTED: Homo sapiens solut... 30.2 2.8 > gi|1034601735|ref|XR_934577.2| PREDICTED: Homo sapiens protein phosphatase, Mg2+/Mn2+ dependent 1D (PPM1D), transcript variant X1, misc_RNA Length=4885 Score = 44.1 bits (22), Expect = 2e-04 Identities = 22/22 (100%), Gaps = 0/22 (0%) Strand=Plus/Plus Query 1 AGAGAATGTCCAAGGTGTAGTC 22 |||||||||||||||||||||| Sbjct 1713 AGAGAATGTCCAAGGTGTAGTC 1734 > gi|312434022|ref|NM_003620.3| Homo sapiens protein phosphatase, Mg2+/Mn2+ dependent 1D (PPM1D), mRNA Length=4790 Score = 44.1 bits (22), Expect = 2e-04 Identities = 22/22 (100%), Gaps = 0/22 (0%) Strand=Plus/Plus Query 1 AGAGAATGTCCAAGGTGTAGTC 22 |||||||||||||||||||||| Sbjct 1606 AGAGAATGTCCAAGGTGTAGTC 1627 > gi|383087740|ref|NR_001564.2| Homo sapiens X inactive specific transcript (non-protein coding) (XIST), long non-coding RNA Length=19296 Score = 30.2 bits (15), Expect = 2.8 Identities = 15/15 (100%), Gaps = 0/15 (0%) Strand=Plus/Minus Query 5 AATGTCCAAGGTGTA 19 ||||||||||||||| Sbjct 6758 AATGTCCAAGGTGTA 6744 > gi|1034596580|ref|XM_011522741.2| PREDICTED: Homo sapiens sorting nexin 29 (SNX29), transcript variant X5, mRNA Length=8440 Score = 30.2 bits (15), Expect = 2.8 Identities = 15/15 (100%), Gaps = 0/15 (0%) Strand=Plus/Minus Query 3 AGAATGTCCAAGGTG 17 ||||||||||||||| Sbjct 4916 AGAATGTCCAAGGTG 4902 > gi|673921630|ref|NM_032167.4| Homo sapiens sorting nexin 29 (SNX29), mRNA Length=8183 Score = 30.2 bits (15), Expect = 2.8 Identities = 15/15 (100%), Gaps = 0/15 (0%) Strand=Plus/Minus Query 3 AGAATGTCCAAGGTG 17 ||||||||||||||| Sbjct 4649 AGAATGTCCAAGGTG 4635 > gi|1034566777|ref|XM_011539371.2| PREDICTED: Homo sapiens solute carrier family 35 member G1 (SLC35G1), transcript variant X1, mRNA Length=3458 Score = 30.2 bits (15), Expect = 2.8 Identities = 15/15 (100%), Gaps = 0/15 (0%) Strand=Plus/Plus Query 5 AATGTCCAAGGTGTA 19 ||||||||||||||| Sbjct 3314 AATGTCCAAGGTGTA 3328 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Effective search space used: 3505770510 Database: rna.fa Posted date: Jan 6, 2017 3:58 PM Number of letters in database: 587,117,901 Number of sequences in database: 176,426 Matrix: blastn matrix 1 -3 Gap Penalties: Existence: 5, Extension: 2