BLASTN 2.4.0+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Database: rna.fa
           176,426 sequences; 587,117,901 total letters



Query= AGAGAATGTCCAAGGTGTAGTC (evalue = 10)

Length=22
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  gi|1034601735|ref|XR_934577.2| PREDICTED: Homo sapiens protein ...  44.1    2e-04
  gi|312434022|ref|NM_003620.3| Homo sapiens protein phosphatase,...  44.1    2e-04
  gi|383087740|ref|NR_001564.2| Homo sapiens X inactive specific ...  30.2    2.8  
  gi|1034596580|ref|XM_011522741.2| PREDICTED: Homo sapiens sorti...  30.2    2.8  
  gi|673921630|ref|NM_032167.4| Homo sapiens sorting nexin 29 (SN...  30.2    2.8  
  gi|1034566777|ref|XM_011539371.2| PREDICTED: Homo sapiens solut...  30.2    2.8  


> gi|1034601735|ref|XR_934577.2| PREDICTED: Homo sapiens protein 
phosphatase, Mg2+/Mn2+ dependent 1D (PPM1D), transcript variant 
X1, misc_RNA
Length=4885

 Score = 44.1 bits (22),  Expect = 2e-04
 Identities = 22/22 (100%), Gaps = 0/22 (0%)
 Strand=Plus/Plus

Query  1     AGAGAATGTCCAAGGTGTAGTC  22
             ||||||||||||||||||||||
Sbjct  1713  AGAGAATGTCCAAGGTGTAGTC  1734


> gi|312434022|ref|NM_003620.3| Homo sapiens protein phosphatase, 
Mg2+/Mn2+ dependent 1D (PPM1D), mRNA
Length=4790

 Score = 44.1 bits (22),  Expect = 2e-04
 Identities = 22/22 (100%), Gaps = 0/22 (0%)
 Strand=Plus/Plus

Query  1     AGAGAATGTCCAAGGTGTAGTC  22
             ||||||||||||||||||||||
Sbjct  1606  AGAGAATGTCCAAGGTGTAGTC  1627


> gi|383087740|ref|NR_001564.2| Homo sapiens X inactive specific 
transcript (non-protein coding) (XIST), long non-coding RNA
Length=19296

 Score = 30.2 bits (15),  Expect = 2.8
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Minus

Query  5     AATGTCCAAGGTGTA  19
             |||||||||||||||
Sbjct  6758  AATGTCCAAGGTGTA  6744


> gi|1034596580|ref|XM_011522741.2| PREDICTED: Homo sapiens sorting 
nexin 29 (SNX29), transcript variant X5, mRNA
Length=8440

 Score = 30.2 bits (15),  Expect = 2.8
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Minus

Query  3     AGAATGTCCAAGGTG  17
             |||||||||||||||
Sbjct  4916  AGAATGTCCAAGGTG  4902


> gi|673921630|ref|NM_032167.4| Homo sapiens sorting nexin 29 (SNX29), 
mRNA
Length=8183

 Score = 30.2 bits (15),  Expect = 2.8
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Minus

Query  3     AGAATGTCCAAGGTG  17
             |||||||||||||||
Sbjct  4649  AGAATGTCCAAGGTG  4635


> gi|1034566777|ref|XM_011539371.2| PREDICTED: Homo sapiens solute 
carrier family 35 member G1 (SLC35G1), transcript variant 
X1, mRNA
Length=3458

 Score = 30.2 bits (15),  Expect = 2.8
 Identities = 15/15 (100%), Gaps = 0/15 (0%)
 Strand=Plus/Plus

Query  5     AATGTCCAAGGTGTA  19
             |||||||||||||||
Sbjct  3314  AATGTCCAAGGTGTA  3328



Lambda      K        H
    1.37    0.711     1.31 

Gapped
Lambda      K        H
    1.37    0.711     1.31 

Effective search space used: 3505770510


  Database: rna.fa
    Posted date:  Jan 6, 2017  3:58 PM
  Number of letters in database: 587,117,901
  Number of sequences in database:  176,426



Matrix: blastn matrix 1 -3
Gap Penalties: Existence: 5, Extension: 2